Wall clock time and date at job start Mon Mar 30 2020 01:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47355 * 2 1 4 4 C 1.53005 * 109.46728 * 240.00332 * 2 1 3 5 5 O 1.45197 * 109.47457 * 120.00801 * 2 1 3 6 6 C 1.34630 * 117.00403 * 59.99103 * 5 2 1 7 7 O 1.21512 * 120.00043 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00194 * 179.72654 * 6 5 2 9 9 C 1.46502 * 120.00154 * 180.27904 * 8 6 5 10 10 H 1.08998 * 115.55135 * 348.85711 * 9 8 6 11 11 C 1.52999 * 117.49860 * 203.18003 * 9 8 6 12 12 C 1.53006 * 117.49676 * 134.52164 * 9 8 6 13 13 H 1.09004 * 117.49621 * 214.97794 * 12 9 8 14 14 C 1.50698 * 117.50056 * 0.02562 * 12 9 8 15 15 O 1.21289 * 119.99955 * 99.55976 * 14 12 9 16 16 N 1.34775 * 119.99905 * 279.55844 * 14 12 9 17 17 C 1.37097 * 120.00258 * 180.02562 * 16 14 12 18 18 H 1.08002 * 119.99830 * 359.97438 * 17 16 14 19 19 C 1.38943 * 120.00254 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00290 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 120.00052 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47143 * 90.00222 * 21 19 17 23 23 H 1.48495 * 109.47220 * 210.00423 * 21 19 17 24 24 H 1.48500 * 109.46769 * 330.00160 * 21 19 17 25 25 H 1.09006 * 109.46643 * 299.99386 * 1 2 3 26 26 H 1.08990 * 109.47166 * 59.99474 * 1 2 3 27 27 H 1.08996 * 109.47040 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47717 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47308 * 300.00622 * 3 2 1 30 30 H 1.09008 * 109.47170 * 60.00364 * 3 2 1 31 31 H 1.09002 * 109.47218 * 300.00111 * 4 2 1 32 32 H 1.09004 * 109.46989 * 59.99957 * 4 2 1 33 33 H 1.08999 * 109.46930 * 180.02562 * 4 2 1 34 34 H 0.97004 * 119.99949 * 0.28021 * 8 6 5 35 35 H 1.09001 * 117.50115 * 0.02562 * 11 9 8 36 36 H 1.09006 * 117.49985 * 144.99562 * 11 9 8 37 37 H 0.97007 * 119.99715 * 0.02562 * 16 14 12 38 38 H 0.97001 * 120.00346 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0141 -0.6846 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0723 -2.6673 2.4139 9 6 1.6836 -4.0704 2.5770 10 1 0.9088 -4.4256 1.8977 11 6 1.7002 -4.6479 3.9937 12 6 2.7744 -5.0627 2.9852 13 1 2.7168 -6.0709 2.5747 14 6 4.1661 -4.5219 3.1892 15 8 4.5682 -4.2894 4.3096 16 7 4.9640 -4.2966 2.1266 17 6 6.2303 -3.8052 2.3121 18 1 6.5884 -3.5981 3.3098 19 6 7.0527 -3.5724 1.2167 20 7 8.2663 -3.1009 1.3945 21 14 6.4332 -3.9299 -0.5091 22 1 5.7750 -2.7179 -1.0596 23 1 7.5768 -4.3095 -1.3769 24 1 5.4552 -5.0464 -0.4625 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6766 -1.7489 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7216 -1.2492 34 1 2.6320 -2.2385 3.0801 35 1 1.9998 -3.9838 4.8045 36 1 0.9361 -5.3830 4.2465 37 1 4.6422 -4.4823 1.2305 38 1 8.8406 -2.9387 0.6297 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496471866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:12 Heat of formation + Delta-G solvation = -93.156598 kcal Electronic energy + Delta-G solvation = -21629.332874 eV Core-core repulsion = 18280.019137 eV Total energy + Delta-G solvation = -3349.313737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66367 -39.10948 -37.29555 -35.93406 -34.15977 -33.96637 -32.31709 -31.65729 -27.42778 -27.35970 -25.78976 -23.52014 -22.58462 -21.24589 -20.05577 -19.19674 -18.21169 -18.15977 -16.75200 -16.02837 -15.98636 -15.10675 -15.02908 -14.54440 -14.34645 -14.12045 -13.57494 -13.31909 -13.02680 -12.66887 -12.49434 -12.34623 -12.23112 -11.90778 -11.87225 -11.71459 -11.70253 -11.28013 -11.27461 -11.02755 -10.60823 -10.30570 -10.28288 -10.01242 -9.95529 -9.62187 -8.85427 -8.48072 -8.22303 -6.36223 -3.87075 2.24649 2.89658 3.02591 3.07833 3.14344 3.57017 4.02081 4.07829 4.17190 4.57372 4.71360 4.76425 4.87607 4.90035 5.07151 5.20797 5.38003 5.43325 5.51916 5.55886 5.65237 5.75099 5.81787 5.85559 5.86662 5.97211 6.01241 6.24231 6.26825 6.34336 6.54113 6.65902 7.52270 7.56910 8.09692 8.52010 8.54205 8.89309 9.38556 9.77750 10.76283 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.007697 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.442948 B = 3636.905284 C = 4919.603126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.136 3.864 3 C -0.142 4.142 4 C -0.186 4.186 5 O -0.360 6.360 6 C 0.658 3.342 7 O -0.575 6.575 8 N -0.676 5.676 9 C 0.106 3.894 10 H 0.144 0.856 11 C -0.152 4.152 12 C -0.185 4.185 13 H 0.126 0.874 14 C 0.473 3.527 15 O -0.578 6.578 16 N -0.576 5.576 17 C -0.307 4.307 18 H 0.121 0.879 19 C 0.046 3.954 20 N -0.876 5.876 21 Si 0.875 3.125 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.268 1.268 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.414 0.586 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.372 0.628 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.910 4.183 -4.515 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.199 4.199 4 C -0.243 4.243 5 O -0.274 6.274 6 C 0.412 3.588 7 O -0.465 6.465 8 N -0.333 5.333 9 C 0.000 4.000 10 H 0.162 0.838 11 C -0.191 4.191 12 C -0.208 4.208 13 H 0.143 0.857 14 C 0.258 3.742 15 O -0.461 6.461 16 N -0.212 5.212 17 C -0.435 4.435 18 H 0.138 0.862 19 C -0.158 4.158 20 N -0.516 5.516 21 Si 0.701 3.299 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.194 1.194 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.250 0.750 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.205 0.795 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.752 4.258 -4.339 16.884 hybrid contribution 0.081 -0.153 -1.239 1.251 sum -15.670 4.105 -5.578 17.133 Atomic orbital electron populations 1.22508 0.94139 1.04976 1.02229 1.22048 0.94128 0.91603 0.82280 1.21862 1.02704 0.92483 1.02826 1.22539 1.02101 1.03420 0.96271 1.86341 1.71348 1.23546 1.46195 1.17926 0.78505 0.80506 0.81842 1.90851 1.41918 1.70590 1.43117 1.44033 1.54447 1.10864 1.23944 1.21587 0.99744 0.78904 0.99751 0.83803 1.23355 0.99866 1.03016 0.92833 1.22930 0.91695 1.00587 1.05618 0.85668 1.18755 0.85453 0.84710 0.85243 1.90567 1.75368 1.56691 1.23514 1.42181 1.14223 1.57952 1.06888 1.19448 0.87429 1.39287 0.97379 0.86165 1.25020 0.95398 0.97118 0.98224 1.69616 1.07064 1.43346 1.31543 0.86734 0.79139 0.79213 0.84812 1.19493 1.20041 1.19387 0.92277 0.91326 0.89363 0.91176 0.90291 0.91507 0.89342 0.91296 0.91859 0.75024 0.87392 0.87269 0.79501 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 2 C 0.14 1.81 1.13 -90.62 -0.10 1.71 16 3 C -0.14 -1.52 8.85 37.15 0.33 -1.19 16 4 C -0.19 -2.55 8.37 37.16 0.31 -2.24 16 5 O -0.36 -5.85 9.94 -40.30 -0.40 -6.25 16 6 C 0.66 11.13 8.06 54.05 0.44 11.57 16 7 O -0.57 -10.06 11.46 -19.28 -0.22 -10.28 16 8 N -0.68 -10.97 5.05 -58.73 -0.30 -11.26 16 9 C 0.11 1.54 6.39 -67.93 -0.43 1.10 16 10 H 0.14 1.90 7.42 -51.93 -0.39 1.52 16 11 C -0.15 -2.04 9.98 -26.69 -0.27 -2.31 16 12 C -0.19 -3.03 6.17 -91.73 -0.57 -3.60 16 13 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 14 C 0.47 10.62 6.68 -10.99 -0.07 10.54 16 15 O -0.58 -15.19 16.27 5.55 0.09 -15.10 16 16 N -0.58 -13.83 5.09 -10.97 -0.06 -13.89 16 17 C -0.31 -8.64 10.16 -14.94 -0.15 -8.80 16 18 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 19 C 0.05 1.27 5.50 -17.47 -0.10 1.17 16 20 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 21 Si 0.87 19.96 27.74 -169.99 -4.71 15.25 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.27 -5.73 6.52 56.52 0.37 -5.36 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.20 5.88 -51.93 -0.31 0.90 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.09 1.38 5.88 -51.93 -0.31 1.08 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.41 6.96 8.64 -40.82 -0.35 6.61 16 35 H 0.11 1.59 7.99 -51.93 -0.42 1.17 16 36 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.37 8.28 5.76 -40.82 -0.24 8.05 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -32.50 320.44 -5.66 -38.16 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -5.36 Total: 17.11 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -0.30 Total: 6.17 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.42 Total: -49.88 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.53 Total: -31.63 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.71 Total: 15.25 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.50 -5.66 -38.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496471866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.000 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds