Wall clock time and date at job start Mon Mar 30 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47355 * 2 1 4 4 C 1.53005 * 109.46728 * 240.00332 * 2 1 3 5 5 O 1.45197 * 109.47457 * 120.00801 * 2 1 3 6 6 C 1.34630 * 117.00403 * 59.99103 * 5 2 1 7 7 O 1.21512 * 120.00043 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00194 * 179.72654 * 6 5 2 9 9 C 1.46502 * 120.00154 * 180.27904 * 8 6 5 10 10 H 1.08998 * 115.55135 * 348.85711 * 9 8 6 11 11 C 1.52999 * 117.49860 * 203.18003 * 9 8 6 12 12 C 1.53006 * 117.49676 * 134.52164 * 9 8 6 13 13 H 1.09004 * 117.49621 * 214.97794 * 12 9 8 14 14 C 1.50698 * 117.50056 * 0.02562 * 12 9 8 15 15 O 1.21289 * 119.99955 * 99.55976 * 14 12 9 16 16 N 1.34775 * 119.99905 * 279.55844 * 14 12 9 17 17 C 1.37097 * 120.00258 * 180.02562 * 16 14 12 18 18 H 1.08002 * 119.99830 * 359.97438 * 17 16 14 19 19 C 1.38943 * 120.00254 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00290 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 120.00052 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47143 * 90.00222 * 21 19 17 23 23 H 1.48495 * 109.47220 * 210.00423 * 21 19 17 24 24 H 1.48500 * 109.46769 * 330.00160 * 21 19 17 25 25 H 1.09006 * 109.46643 * 299.99386 * 1 2 3 26 26 H 1.08990 * 109.47166 * 59.99474 * 1 2 3 27 27 H 1.08996 * 109.47040 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47717 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47308 * 300.00622 * 3 2 1 30 30 H 1.09008 * 109.47170 * 60.00364 * 3 2 1 31 31 H 1.09002 * 109.47218 * 300.00111 * 4 2 1 32 32 H 1.09004 * 109.46989 * 59.99957 * 4 2 1 33 33 H 1.08999 * 109.46930 * 180.02562 * 4 2 1 34 34 H 0.97004 * 119.99949 * 0.28021 * 8 6 5 35 35 H 1.09001 * 117.50115 * 0.02562 * 11 9 8 36 36 H 1.09006 * 117.49985 * 144.99562 * 11 9 8 37 37 H 0.97007 * 119.99715 * 0.02562 * 16 14 12 38 38 H 0.97001 * 120.00346 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0141 -0.6846 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5035 8 7 2.0723 -2.6673 2.4139 9 6 1.6836 -4.0704 2.5770 10 1 0.9088 -4.4256 1.8977 11 6 1.7002 -4.6479 3.9937 12 6 2.7744 -5.0627 2.9852 13 1 2.7168 -6.0709 2.5747 14 6 4.1661 -4.5219 3.1892 15 8 4.5682 -4.2894 4.3096 16 7 4.9640 -4.2966 2.1266 17 6 6.2303 -3.8052 2.3121 18 1 6.5884 -3.5981 3.3098 19 6 7.0527 -3.5724 1.2167 20 7 8.2663 -3.1009 1.3945 21 14 6.4332 -3.9299 -0.5091 22 1 5.7750 -2.7179 -1.0596 23 1 7.5768 -4.3095 -1.3769 24 1 5.4552 -5.0464 -0.4625 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6766 -1.7489 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7216 -1.2492 34 1 2.6320 -2.2385 3.0801 35 1 1.9998 -3.9838 4.8045 36 1 0.9361 -5.3830 4.2465 37 1 4.6422 -4.4823 1.2305 38 1 8.8406 -2.9387 0.6297 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496471866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:11 Heat of formation + Delta-G solvation = -117.654468 kcal Electronic energy + Delta-G solvation = -21630.395182 eV Core-core repulsion = 18280.019137 eV Total energy + Delta-G solvation = -3350.376044 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88501 -40.70009 -38.68486 -37.27311 -36.02538 -35.24487 -33.77297 -33.52169 -28.35839 -28.29768 -27.71405 -24.81026 -24.10525 -22.42843 -21.21215 -21.09705 -20.00784 -19.35945 -18.22700 -17.38477 -17.19821 -16.95865 -16.34060 -16.03820 -15.51949 -15.34897 -15.19788 -14.74009 -14.60135 -14.39610 -14.03568 -13.35681 -13.34455 -13.08702 -12.97145 -12.89807 -12.86200 -12.77792 -12.49300 -12.31575 -12.21910 -12.06136 -11.60811 -11.47462 -11.39153 -11.14044 -10.58490 -10.30604 -9.89626 -8.48187 -6.07162 1.09838 1.21669 1.25511 1.33336 1.61111 1.85127 2.13501 2.69038 2.95316 3.07273 3.12649 3.68219 3.74839 3.80023 3.86083 3.94748 4.03452 4.38475 4.49409 4.59663 4.63161 4.76385 4.78282 4.86556 4.87525 4.89916 5.04960 5.12699 5.27622 5.30074 5.38492 5.48399 5.52912 5.89958 6.27373 6.50888 6.80886 7.25588 7.33637 7.87658 8.68899 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.007697 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.442948 B = 3636.905284 C = 4919.603126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.121 3.879 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.377 6.377 6 C 0.655 3.345 7 O -0.581 6.581 8 N -0.683 5.683 9 C 0.114 3.886 10 H 0.167 0.833 11 C -0.129 4.129 12 C -0.202 4.202 13 H 0.160 0.840 14 C 0.478 3.522 15 O -0.622 6.622 16 N -0.580 5.580 17 C -0.325 4.325 18 H 0.063 0.937 19 C -0.004 4.004 20 N -0.925 5.925 21 Si 0.949 3.051 22 H -0.264 1.264 23 H -0.268 1.268 24 H -0.241 1.241 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.407 0.593 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.384 0.616 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.851 3.722 -6.508 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.085 3.915 3 C -0.195 4.195 4 C -0.241 4.241 5 O -0.291 6.291 6 C 0.409 3.591 7 O -0.472 6.472 8 N -0.339 5.339 9 C 0.009 3.991 10 H 0.185 0.815 11 C -0.167 4.167 12 C -0.225 4.225 13 H 0.177 0.823 14 C 0.266 3.734 15 O -0.508 6.508 16 N -0.218 5.218 17 C -0.454 4.454 18 H 0.081 0.919 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.770 3.230 22 H -0.189 1.189 23 H -0.192 1.192 24 H -0.164 1.164 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.242 0.758 35 H 0.110 0.890 36 H 0.173 0.827 37 H 0.219 0.781 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.718 3.785 -6.328 20.118 hybrid contribution 0.990 0.047 -0.489 1.105 sum -17.727 3.832 -6.817 19.376 Atomic orbital electron populations 1.22432 0.92658 1.04095 1.03838 1.22492 0.95447 0.92452 0.81128 1.21910 1.01865 0.91105 1.04643 1.22518 1.00860 1.02766 0.97914 1.86354 1.71698 1.23394 1.47690 1.18050 0.78489 0.80796 0.81810 1.90842 1.42242 1.70835 1.43270 1.44228 1.54326 1.11639 1.23689 1.21855 0.98582 0.77542 1.01167 0.81549 1.23528 0.98826 1.02826 0.91544 1.22907 0.87989 1.02398 1.09169 0.82305 1.19889 0.87331 0.82205 0.83992 1.90545 1.76996 1.57860 1.25379 1.42051 1.13089 1.58705 1.07997 1.19039 0.89788 1.41176 0.95442 0.91859 1.25899 0.95196 0.96277 1.03002 1.69767 1.08715 1.44666 1.33395 0.85587 0.79347 0.80038 0.78050 1.18852 1.19225 1.16430 0.91734 0.88647 0.91381 0.92530 0.87260 0.90907 0.91339 0.88287 0.93673 0.75849 0.89048 0.82748 0.78104 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 8.37 71.98 0.60 -3.02 16 2 C 0.12 3.02 1.13 -10.79 -0.01 3.01 16 3 C -0.14 -2.68 8.85 71.98 0.64 -2.04 16 4 C -0.18 -4.72 8.37 71.98 0.60 -4.12 16 5 O -0.38 -12.05 9.94 -55.39 -0.55 -12.60 16 6 C 0.65 21.47 8.06 129.79 1.05 22.51 16 7 O -0.58 -19.39 11.46 19.80 0.23 -19.16 16 8 N -0.68 -21.51 5.05 -570.13 -2.88 -24.39 16 9 C 0.11 2.99 6.39 44.99 0.29 3.28 16 10 H 0.17 3.73 7.42 -2.39 -0.02 3.71 16 11 C -0.13 -3.06 9.98 30.62 0.31 -2.76 16 12 C -0.20 -6.11 6.17 -11.51 -0.07 -6.18 16 13 H 0.16 3.80 8.14 -2.39 -0.02 3.78 16 14 C 0.48 21.54 6.68 87.66 0.59 22.12 16 15 O -0.62 -33.81 16.27 -3.06 -0.05 -33.86 16 16 N -0.58 -28.09 5.09 -307.00 -1.56 -29.66 16 17 C -0.33 -19.14 10.16 84.04 0.85 -18.28 16 18 H 0.06 4.37 7.39 -2.91 -0.02 4.35 16 19 C 0.00 -0.22 5.50 84.93 0.47 0.25 16 20 N -0.93 -55.81 13.96 21.66 0.30 -55.51 16 21 Si 0.95 40.94 27.74 68.60 1.90 42.85 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.24 -9.21 6.52 99.48 0.65 -8.56 16 25 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.73 5.88 -2.39 -0.01 1.71 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 2.04 5.88 -2.39 -0.01 2.03 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 34 H 0.41 13.82 8.64 -92.71 -0.80 13.02 16 35 H 0.09 2.55 7.99 -2.39 -0.02 2.53 16 36 H 0.15 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.38 16.61 5.76 -92.70 -0.53 16.07 16 38 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -75.45 320.44 2.39 -73.06 By element: Atomic # 1 Polarization: 44.80 SS G_CDS: -0.30 Total: 44.50 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.30 Total: 14.76 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -4.14 Total: -109.56 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: -0.37 Total: -65.62 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.90 Total: 42.85 kcal Total: -75.45 2.39 -73.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496471866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.592 kcal (2) G-P(sol) polarization free energy of solvation -75.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds