Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34643 * 116.99683 * 2 1 4 4 O 1.21511 * 120.00126 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00133 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00288 * 180.02562 * 5 3 2 7 7 H 1.08994 * 109.47136 * 325.00245 * 6 5 3 8 8 C 1.53001 * 109.46865 * 85.00370 * 6 5 3 9 9 C 1.50700 * 109.47331 * 205.00308 * 6 5 3 10 10 O 1.21281 * 119.99884 * 333.72342 * 9 6 5 11 11 N 1.34776 * 120.00281 * 153.72767 * 9 6 5 12 12 C 1.46500 * 120.00099 * 185.00960 * 11 9 6 13 13 C 1.53000 * 109.46897 * 184.32437 * 12 11 9 14 14 C 1.50696 * 115.54852 * 296.54244 * 13 12 11 15 15 H 1.08000 * 119.99557 * 92.24189 * 14 13 12 16 16 C 1.37873 * 120.00467 * 272.23886 * 14 13 12 17 17 N 1.31513 * 120.00073 * 183.32122 * 16 14 13 18 18 Si 1.86807 * 119.99880 * 3.32141 * 16 14 13 19 19 H 1.48501 * 109.46961 * 266.27035 * 18 16 14 20 20 H 1.48498 * 109.46825 * 26.26454 * 18 16 14 21 21 H 1.48494 * 109.47182 * 146.26876 * 18 16 14 22 22 C 1.53001 * 117.49814 * 82.21790 * 13 12 11 23 23 C 1.52999 * 117.49700 * 150.87525 * 13 12 11 24 24 H 1.09004 * 109.47200 * 299.99804 * 1 2 3 25 25 H 1.08996 * 109.47048 * 59.99780 * 1 2 3 26 26 H 1.08996 * 109.46967 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99823 * 0.02562 * 5 3 2 28 28 H 1.09003 * 109.47290 * 64.98762 * 8 6 5 29 29 H 1.09007 * 109.47037 * 184.98482 * 8 6 5 30 30 H 1.08999 * 109.47185 * 304.98605 * 8 6 5 31 31 H 0.96997 * 119.99469 * 5.00520 * 11 9 6 32 32 H 1.08998 * 109.47293 * 64.31949 * 12 11 9 33 33 H 1.09004 * 109.46544 * 304.31895 * 12 11 9 34 34 H 0.97005 * 119.99951 * 180.02562 * 17 16 14 35 35 H 1.09000 * 117.49738 * 215.00111 * 22 13 12 36 36 H 1.08997 * 117.49932 * 0.02562 * 22 13 12 37 37 H 1.09000 * 117.49858 * 359.97438 * 23 13 12 38 38 H 1.09004 * 117.49447 * 144.97023 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2704 0.0005 6 6 4.0742 2.5757 0.0011 7 1 3.4893 3.2817 -0.5883 8 6 4.1932 3.0867 1.4383 9 6 5.4498 2.4389 -0.5989 10 8 6.0287 1.3742 -0.5519 11 7 6.0367 3.4997 -1.1878 12 6 7.3249 3.3406 -1.8670 13 6 7.8182 4.7056 -2.3512 14 6 6.9523 5.3808 -3.3833 15 1 6.1791 6.0682 -3.0732 16 6 7.1471 5.1213 -4.7233 17 7 6.4358 5.7594 -5.6269 18 14 8.4214 3.8632 -5.2553 19 1 9.7075 4.5501 -5.5371 20 1 8.6187 2.8691 -4.1699 21 1 7.9511 3.1704 -6.4816 22 6 8.5344 5.5986 -1.3361 23 6 9.3304 4.9155 -2.4510 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9375 0.4568 0.0005 28 1 4.8508 2.4276 2.0051 29 1 4.6070 4.0952 1.4323 30 1 3.2066 3.1016 1.9015 31 1 5.6061 4.3684 -1.1618 32 1 7.2056 2.6735 -2.7208 33 1 8.0513 2.9168 -1.1736 34 1 6.5727 5.5765 -6.5696 35 1 8.3793 6.6746 -1.4148 36 1 8.6546 5.2135 -0.3236 37 1 9.9738 4.0813 -2.1713 38 1 9.6990 5.5418 -3.2635 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497160803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = -93.742704 kcal Electronic energy + Delta-G solvation = -20914.925455 eV Core-core repulsion = 17565.586303 eV Total energy + Delta-G solvation = -3349.339152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66299 -39.48679 -37.32546 -36.67312 -34.95097 -33.67671 -32.18438 -30.95045 -27.59180 -26.99420 -25.48343 -23.96017 -21.81347 -21.32315 -20.10409 -19.47301 -18.84935 -17.21604 -16.73405 -16.57550 -16.19564 -15.68156 -15.23322 -14.79501 -14.47305 -14.17755 -13.74643 -13.73352 -13.17223 -12.98779 -12.72874 -12.45873 -12.35118 -12.21221 -12.04618 -11.69549 -11.20994 -10.88553 -10.84015 -10.69057 -10.58333 -10.23248 -9.83235 -9.65735 -9.30447 -9.25653 -8.71005 -8.64851 -8.44536 -6.20940 -4.26332 1.98129 2.70640 2.87975 3.24044 3.34954 3.37975 3.52294 4.18518 4.34706 4.72088 4.96308 4.98954 5.02791 5.07013 5.08472 5.12113 5.31856 5.52837 5.60660 5.68179 5.95321 6.00652 6.02138 6.09758 6.15342 6.26673 6.37581 6.41248 6.64877 6.87070 6.96099 7.02796 7.32863 7.62025 7.93192 8.24694 8.34978 8.48915 8.79187 9.41894 10.90177 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.004555 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.115668 B = 6145.290358 C = 6600.405647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.372 6.372 3 C 0.650 3.350 4 O -0.572 6.572 5 N -0.691 5.691 6 C 0.142 3.858 7 H 0.115 0.885 8 C -0.158 4.158 9 C 0.506 3.494 10 O -0.552 6.552 11 N -0.692 5.692 12 C 0.154 3.846 13 C -0.017 4.017 14 C -0.494 4.494 15 H 0.079 0.921 16 C 0.081 3.919 17 N -0.893 5.893 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.256 1.256 21 H -0.293 1.293 22 C -0.177 4.177 23 C -0.191 4.191 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.416 0.584 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.409 0.591 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.266 0.734 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.984 -8.026 12.168 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.460 6.460 5 N -0.352 5.352 6 C 0.035 3.965 7 H 0.133 0.867 8 C -0.216 4.216 9 C 0.290 3.710 10 O -0.431 6.431 11 N -0.341 5.341 12 C 0.031 3.969 13 C -0.018 4.018 14 C -0.531 4.531 15 H 0.097 0.903 16 C -0.122 4.122 17 N -0.529 5.529 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.181 1.181 21 H -0.220 1.220 22 C -0.214 4.214 23 C -0.229 4.229 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.253 0.747 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.244 0.756 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.995 -8.277 11.951 15.725 hybrid contribution 0.590 -0.509 -0.569 0.965 sum -5.405 -8.786 11.382 15.361 Atomic orbital electron populations 1.23195 0.74372 1.03389 1.02812 1.86250 1.24194 1.30991 1.87125 1.18015 0.83227 0.82233 0.76262 1.91008 1.64593 1.34715 1.55722 1.44347 1.03025 1.10254 1.77594 1.20785 0.91932 0.84791 0.99013 0.86708 1.22119 1.03436 1.02025 0.94044 1.20320 0.87161 0.84732 0.78816 1.90665 1.65130 1.27742 1.59611 1.45826 1.23166 1.11601 1.53483 1.21241 0.82775 0.97983 0.94897 1.19600 0.91306 0.92454 0.98468 1.20185 1.17809 1.26410 0.88721 0.90287 1.24968 0.95552 0.95220 0.96473 1.69889 1.40568 1.41140 1.01302 0.86874 0.81747 0.82503 0.78349 1.20402 1.18067 1.21968 1.22850 1.06476 0.99065 0.93051 1.22949 0.95436 1.02833 1.01711 0.91852 0.91725 0.88040 0.74664 0.91598 0.90295 0.90908 0.75582 0.91686 0.93243 0.92418 0.89328 0.90861 0.90729 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -4.60 10.62 -40.33 -0.43 -5.03 16 3 C 0.65 9.37 8.71 54.05 0.47 9.84 16 4 O -0.57 -9.52 15.80 -19.28 -0.30 -9.83 16 5 N -0.69 -9.50 5.06 -59.87 -0.30 -9.81 16 6 C 0.14 1.97 2.97 -69.08 -0.21 1.76 16 7 H 0.12 1.63 7.58 -51.93 -0.39 1.24 16 8 C -0.16 -1.79 9.47 37.16 0.35 -1.44 16 9 C 0.51 8.38 7.03 -10.99 -0.08 8.31 16 10 O -0.55 -10.57 16.02 5.56 0.09 -10.48 16 11 N -0.69 -12.05 5.46 -60.29 -0.33 -12.38 16 12 C 0.15 3.08 5.15 -4.04 -0.02 3.06 16 13 C -0.02 -0.36 0.85 -155.66 -0.13 -0.49 16 14 C -0.49 -12.57 9.10 -34.44 -0.31 -12.89 16 15 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -25.97 13.96 55.43 0.77 -25.20 16 18 Si 0.88 20.89 24.95 -169.99 -4.24 16.65 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.26 -5.81 5.63 56.52 0.32 -5.49 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C -0.18 -3.26 9.96 -26.69 -0.27 -3.52 16 23 C -0.19 -3.79 7.61 -26.69 -0.20 -3.99 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.42 5.51 7.91 -40.82 -0.32 5.19 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.41 6.65 8.28 -40.82 -0.34 6.31 16 32 H 0.06 1.44 6.58 -51.93 -0.34 1.10 16 33 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.09 1.90 7.30 -51.93 -0.38 1.52 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -31.25 323.92 -4.93 -36.18 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.64 Total: 10.70 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 0.57 Total: 4.31 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.14 Total: -47.38 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.64 Total: -25.34 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.24 Total: 16.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.25 -4.93 -36.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497160803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.566 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds