Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34643 * 116.99683 * 2 1 4 4 O 1.21511 * 120.00126 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00133 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00288 * 180.02562 * 5 3 2 7 7 H 1.08994 * 109.47136 * 325.00245 * 6 5 3 8 8 C 1.53001 * 109.46865 * 85.00370 * 6 5 3 9 9 C 1.50700 * 109.47331 * 205.00308 * 6 5 3 10 10 O 1.21281 * 119.99884 * 333.72342 * 9 6 5 11 11 N 1.34776 * 120.00281 * 153.72767 * 9 6 5 12 12 C 1.46500 * 120.00099 * 185.00960 * 11 9 6 13 13 C 1.53000 * 109.46897 * 184.32437 * 12 11 9 14 14 C 1.50696 * 115.54852 * 296.54244 * 13 12 11 15 15 H 1.08000 * 119.99557 * 92.24189 * 14 13 12 16 16 C 1.37873 * 120.00467 * 272.23886 * 14 13 12 17 17 N 1.31513 * 120.00073 * 183.32122 * 16 14 13 18 18 Si 1.86807 * 119.99880 * 3.32141 * 16 14 13 19 19 H 1.48501 * 109.46961 * 266.27035 * 18 16 14 20 20 H 1.48498 * 109.46825 * 26.26454 * 18 16 14 21 21 H 1.48494 * 109.47182 * 146.26876 * 18 16 14 22 22 C 1.53001 * 117.49814 * 82.21790 * 13 12 11 23 23 C 1.52999 * 117.49700 * 150.87525 * 13 12 11 24 24 H 1.09004 * 109.47200 * 299.99804 * 1 2 3 25 25 H 1.08996 * 109.47048 * 59.99780 * 1 2 3 26 26 H 1.08996 * 109.46967 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99823 * 0.02562 * 5 3 2 28 28 H 1.09003 * 109.47290 * 64.98762 * 8 6 5 29 29 H 1.09007 * 109.47037 * 184.98482 * 8 6 5 30 30 H 1.08999 * 109.47185 * 304.98605 * 8 6 5 31 31 H 0.96997 * 119.99469 * 5.00520 * 11 9 6 32 32 H 1.08998 * 109.47293 * 64.31949 * 12 11 9 33 33 H 1.09004 * 109.46544 * 304.31895 * 12 11 9 34 34 H 0.97005 * 119.99951 * 180.02562 * 17 16 14 35 35 H 1.09000 * 117.49738 * 215.00111 * 22 13 12 36 36 H 1.08997 * 117.49932 * 0.02562 * 22 13 12 37 37 H 1.09000 * 117.49858 * 359.97438 * 23 13 12 38 38 H 1.09004 * 117.49447 * 144.97023 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2704 0.0005 6 6 4.0742 2.5757 0.0011 7 1 3.4893 3.2817 -0.5883 8 6 4.1932 3.0867 1.4383 9 6 5.4498 2.4389 -0.5989 10 8 6.0287 1.3742 -0.5519 11 7 6.0367 3.4997 -1.1878 12 6 7.3249 3.3406 -1.8670 13 6 7.8182 4.7056 -2.3512 14 6 6.9523 5.3808 -3.3833 15 1 6.1791 6.0682 -3.0732 16 6 7.1471 5.1213 -4.7233 17 7 6.4358 5.7594 -5.6269 18 14 8.4214 3.8632 -5.2553 19 1 9.7075 4.5501 -5.5371 20 1 8.6187 2.8691 -4.1699 21 1 7.9511 3.1704 -6.4816 22 6 8.5344 5.5986 -1.3361 23 6 9.3304 4.9155 -2.4510 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9375 0.4568 0.0005 28 1 4.8508 2.4276 2.0051 29 1 4.6070 4.0952 1.4323 30 1 3.2066 3.1016 1.9015 31 1 5.6061 4.3684 -1.1618 32 1 7.2056 2.6735 -2.7208 33 1 8.0513 2.9168 -1.1736 34 1 6.5727 5.5765 -6.5696 35 1 8.3793 6.6746 -1.4148 36 1 8.6546 5.2135 -0.3236 37 1 9.9738 4.0813 -2.1713 38 1 9.6990 5.5418 -3.2635 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497160803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = -118.061693 kcal Electronic energy + Delta-G solvation = -20915.980006 eV Core-core repulsion = 17565.586303 eV Total energy + Delta-G solvation = -3350.393703 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79197 -40.79074 -38.85217 -37.79483 -36.12761 -35.13605 -34.21000 -32.02048 -28.58579 -28.34115 -27.29474 -25.14588 -23.33157 -22.47309 -21.41452 -21.02499 -20.13483 -18.63629 -18.07934 -17.68062 -17.56945 -17.02439 -16.89042 -16.24364 -15.80925 -15.39672 -14.98788 -14.81425 -14.72766 -14.48627 -14.26948 -13.97106 -13.49832 -13.30003 -13.09154 -12.97247 -12.73127 -12.64369 -12.17725 -11.95587 -11.83760 -11.81446 -11.58777 -11.10305 -10.95729 -10.67897 -10.51932 -10.27784 -9.94949 -8.29295 -6.35972 0.93455 1.34458 1.40699 1.49729 1.52587 1.64886 2.20016 2.36851 3.06266 3.19139 3.23210 3.65653 3.98976 4.00785 4.04381 4.35175 4.37899 4.38243 4.42929 4.54441 4.57717 4.69611 4.74801 4.82528 4.89755 5.06385 5.11858 5.13650 5.28312 5.30254 5.46528 5.52551 5.70927 6.23186 6.29188 6.55612 6.74075 7.12414 7.16440 7.35192 8.85269 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.004555 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.115668 B = 6145.290358 C = 6600.405647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.374 6.374 3 C 0.650 3.350 4 O -0.598 6.598 5 N -0.689 5.689 6 C 0.147 3.853 7 H 0.110 0.890 8 C -0.150 4.150 9 C 0.511 3.489 10 O -0.576 6.576 11 N -0.693 5.693 12 C 0.163 3.837 13 C -0.040 4.040 14 C -0.480 4.480 15 H 0.047 0.953 16 C 0.027 3.973 17 N -0.944 5.944 18 Si 0.927 3.073 19 H -0.269 1.269 20 H -0.236 1.236 21 H -0.304 1.304 22 C -0.151 4.151 23 C -0.192 4.192 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.137 0.863 27 H 0.419 0.581 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.413 0.587 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 -9.172 14.097 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.288 6.288 3 C 0.403 3.597 4 O -0.489 6.489 5 N -0.351 5.351 6 C 0.040 3.960 7 H 0.128 0.872 8 C -0.208 4.208 9 C 0.296 3.704 10 O -0.456 6.456 11 N -0.342 5.342 12 C 0.039 3.961 13 C -0.041 4.041 14 C -0.518 4.518 15 H 0.065 0.935 16 C -0.171 4.171 17 N -0.584 5.584 18 Si 0.753 3.247 19 H -0.195 1.195 20 H -0.159 1.159 21 H -0.232 1.232 22 C -0.188 4.188 23 C -0.230 4.230 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.155 0.845 27 H 0.257 0.743 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.250 0.750 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.186 -9.435 13.915 17.594 hybrid contribution 0.250 -0.134 -1.117 1.153 sum -4.935 -9.569 12.798 16.725 Atomic orbital electron populations 1.23550 0.72416 1.05767 1.02791 1.86267 1.26087 1.29726 1.86690 1.18110 0.83238 0.82501 0.75836 1.90988 1.65143 1.35730 1.57022 1.44358 1.03023 1.10331 1.77340 1.20769 0.89967 0.84909 1.00384 0.87189 1.22090 1.03822 1.02882 0.92011 1.20682 0.87788 0.83914 0.78009 1.90653 1.65968 1.28521 1.60472 1.45790 1.22738 1.12215 1.53454 1.20978 0.84110 0.96445 0.94545 1.19440 0.91745 0.93638 0.99320 1.20381 1.16930 1.24856 0.89596 0.93527 1.25707 0.97510 0.97066 0.96862 1.70025 1.43179 1.43663 1.01539 0.86061 0.79790 0.80855 0.77965 1.19492 1.15913 1.23185 1.22881 1.03455 0.98489 0.93952 1.23017 0.94354 1.03624 1.02002 0.91465 0.92215 0.84495 0.74338 0.91075 0.88715 0.90705 0.75029 0.94217 0.91648 0.92727 0.89731 0.87674 0.88200 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.77 10.56 113.37 1.20 1.97 16 2 O -0.37 -8.76 10.62 -55.52 -0.59 -9.35 16 3 C 0.65 18.15 8.71 129.79 1.13 19.28 16 4 O -0.60 -19.55 15.80 19.80 0.31 -19.24 16 5 N -0.69 -18.21 5.06 -573.74 -2.90 -21.12 16 6 C 0.15 3.88 2.97 44.25 0.13 4.01 16 7 H 0.11 3.04 7.58 -2.39 -0.02 3.03 16 8 C -0.15 -3.08 9.47 71.98 0.68 -2.40 16 9 C 0.51 16.17 7.03 87.66 0.62 16.79 16 10 O -0.58 -21.11 16.02 -3.03 -0.05 -21.16 16 11 N -0.69 -23.11 5.46 -463.06 -2.53 -25.64 16 12 C 0.16 6.18 5.15 86.38 0.45 6.63 16 13 C -0.04 -1.63 0.85 -52.93 -0.05 -1.67 16 14 C -0.48 -24.56 9.10 25.60 0.23 -24.33 16 15 H 0.05 2.63 8.06 -2.91 -0.02 2.60 16 16 C 0.03 1.47 5.47 84.65 0.46 1.93 16 17 N -0.94 -56.65 13.96 21.45 0.30 -56.35 16 18 Si 0.93 42.91 24.95 68.60 1.71 44.62 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.24 -10.05 5.63 99.48 0.56 -9.49 16 21 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 22 C -0.15 -5.06 9.96 30.62 0.30 -4.76 16 23 C -0.19 -7.04 7.61 30.62 0.23 -6.80 16 24 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.42 10.63 7.91 -92.71 -0.73 9.89 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.41 13.02 8.28 -92.71 -0.77 12.25 16 32 H 0.04 1.70 6.58 -2.39 -0.02 1.68 16 33 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 34 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 35 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.10 3.17 8.14 -2.39 -0.02 3.16 16 38 H 0.08 3.03 7.30 -2.39 -0.02 3.02 16 Total: -1.00 -67.59 323.92 1.08 -66.51 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.57 Total: 31.08 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.39 Total: 10.64 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -5.13 Total: -103.11 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.33 Total: -49.75 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.71 Total: 44.62 kcal Total: -67.59 1.08 -66.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497160803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.549 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds