Wall clock time and date at job start Mon Mar 30 2020 02:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99710 * 2 1 3 5 5 C 1.42899 * 114.00172 * 269.99873 * 4 2 1 6 6 C 1.52996 * 109.46966 * 180.02562 * 5 4 2 7 7 C 1.52997 * 117.49697 * 243.62383 * 6 5 4 8 8 C 1.53001 * 60.00190 * 252.51037 * 7 6 5 9 9 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 10 10 O 1.21274 * 120.00414 * 245.00531 * 9 2 1 11 11 N 1.34776 * 119.99626 * 65.00483 * 9 2 1 12 12 C 1.46500 * 120.00293 * 179.97438 * 11 9 2 13 13 C 1.50698 * 109.47431 * 179.97438 * 12 11 9 14 14 O 1.21286 * 119.99957 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99931 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00402 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99651 * 0.02562 * 16 15 13 18 18 C 1.38944 * 120.00557 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00272 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99807 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47351 * 89.99757 * 20 18 16 22 22 H 1.48502 * 109.47119 * 209.99677 * 20 18 16 23 23 H 1.48505 * 109.47198 * 329.99617 * 20 18 16 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 1.08994 * 109.46897 * 300.00216 * 5 4 2 28 28 H 1.09001 * 109.46938 * 60.00344 * 5 4 2 29 29 H 1.08999 * 115.55349 * 29.32847 * 6 5 4 30 30 H 1.09005 * 117.50399 * 359.97438 * 7 6 5 31 31 H 1.08996 * 117.50547 * 145.02017 * 7 6 5 32 32 H 1.09001 * 117.49534 * 252.51383 * 8 7 6 33 33 H 1.08998 * 117.50025 * 107.48854 * 8 7 6 34 34 H 0.97003 * 120.00627 * 359.97438 * 11 9 2 35 35 H 1.09001 * 109.46823 * 300.00504 * 12 11 9 36 36 H 1.09002 * 109.46583 * 59.99491 * 12 11 9 37 37 H 0.97004 * 119.99644 * 0.02562 * 15 13 12 38 38 H 0.97004 * 120.00172 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1830 2.2942 6 6 2.7090 -0.6406 3.4789 7 6 1.8136 -0.7257 4.7166 8 6 3.0909 0.1158 4.7529 9 6 2.0324 -0.7105 -1.2304 10 8 2.6529 -1.7467 -1.1214 11 7 1.7920 -0.1942 -2.4519 12 6 2.2808 -0.8845 -3.6481 13 6 1.8815 -0.1066 -4.8755 14 8 1.2512 0.9234 -4.7622 15 7 2.2258 -0.5549 -6.0990 16 6 1.8631 0.1530 -7.2156 17 1 1.3018 1.0702 -7.1148 18 6 2.2185 -0.3088 -8.4769 19 7 1.8704 0.3695 -9.5472 20 14 3.1900 -1.8947 -8.6513 21 1 2.2517 -3.0397 -8.7691 22 1 4.0394 -1.8238 -9.8674 23 1 4.0514 -2.0816 -7.4561 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.9319 0.9513 2.0451 28 1 1.2538 0.6547 2.5589 29 1 3.2970 -1.5214 3.2212 30 1 0.8621 -0.1947 4.6870 31 1 1.8122 -1.6627 5.2733 32 1 3.9298 -0.2678 5.3335 33 1 2.9796 1.2001 4.7470 34 1 1.2954 0.6344 -2.5392 35 1 3.3671 -0.9624 -3.6042 36 1 1.8465 -1.8832 -3.6941 37 1 2.7303 -1.3784 -6.1895 38 1 2.1182 0.0469 -10.4278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:41 Heat of formation + Delta-G solvation = -93.867672 kcal Electronic energy + Delta-G solvation = -20020.595202 eV Core-core repulsion = 16671.250631 eV Total energy + Delta-G solvation = -3349.344571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00419 -38.71304 -38.09591 -36.68368 -34.56374 -33.81512 -31.89476 -31.63553 -27.89633 -27.34237 -24.79599 -23.50862 -22.70950 -21.09626 -20.18108 -19.66335 -18.70775 -17.46237 -17.23767 -16.12577 -15.66828 -15.54514 -15.18278 -15.04499 -14.84163 -14.57360 -14.07600 -13.78473 -13.17268 -13.10628 -12.81854 -12.51061 -12.46763 -12.20484 -12.07285 -11.91055 -11.79308 -11.25302 -11.22079 -10.79360 -10.65900 -10.63613 -10.08564 -9.92564 -9.72301 -9.47929 -8.92741 -8.80691 -8.33018 -6.43004 -3.95756 2.69370 2.76532 2.98323 3.03143 3.11421 3.42784 3.53238 3.75234 4.01794 4.46018 4.51191 4.54959 4.65234 4.72713 4.80835 4.90252 4.99020 5.11890 5.15686 5.28185 5.33704 5.44592 5.51258 5.54042 5.65185 5.75401 5.76156 5.78716 5.89378 5.94680 6.50628 6.90726 7.41677 7.68997 7.97712 8.32507 8.43461 8.79124 9.27284 9.60392 10.69033 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.049418 B = 0.002908 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.459450 B = 9627.295097 C = 9950.286355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.074 3.926 3 H 0.087 0.913 4 O -0.354 6.354 5 C 0.090 3.910 6 C -0.152 4.152 7 C -0.177 4.177 8 C -0.175 4.175 9 C 0.513 3.487 10 O -0.528 6.528 11 N -0.706 5.706 12 C 0.107 3.893 13 C 0.438 3.562 14 O -0.580 6.580 15 N -0.576 5.576 16 C -0.311 4.311 17 H 0.122 0.878 18 C 0.045 3.955 19 N -0.874 5.874 20 Si 0.879 3.121 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.267 1.267 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.412 0.588 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.375 0.625 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 -1.409 23.009 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.105 0.895 4 O -0.272 6.272 5 C 0.013 3.987 6 C -0.170 4.170 7 C -0.214 4.214 8 C -0.212 4.212 9 C 0.298 3.702 10 O -0.404 6.404 11 N -0.362 5.362 12 C -0.020 4.020 13 C 0.224 3.776 14 O -0.464 6.464 15 N -0.213 5.213 16 C -0.439 4.439 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.512 5.512 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.192 1.192 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.250 0.750 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.208 0.792 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.687 -1.643 22.895 22.964 hybrid contribution 0.509 -0.560 -0.467 0.890 sum 1.196 -2.203 22.428 22.567 Atomic orbital electron populations 1.22244 0.93348 1.03968 1.03322 1.21839 0.95240 0.96256 0.85417 0.89499 1.88036 1.86549 1.33941 1.18660 1.22115 0.99051 0.92060 0.85435 1.22122 1.04067 1.02515 0.88283 1.23072 0.94935 1.02150 1.01283 1.22980 0.99329 0.98866 0.99987 1.20271 0.80158 0.85678 0.84121 1.90703 1.39882 1.23259 1.86545 1.45608 1.57672 1.28553 1.04394 1.20981 1.00379 0.96356 0.84323 1.19613 0.85996 0.87921 0.84077 1.90533 1.44394 1.25816 1.85667 1.42128 1.49730 1.23601 1.05848 1.19437 1.34101 1.08250 0.82114 0.86061 1.25070 0.97551 0.98217 0.95068 1.69617 1.44866 1.38543 0.98209 0.86669 0.80526 0.83449 0.78845 1.19366 1.19957 1.19208 0.90402 0.90998 0.91346 0.92687 0.92955 0.86600 0.88669 0.88593 0.88378 0.88652 0.75006 0.89639 0.89612 0.79208 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.07 0.88 3.13 -27.88 -0.09 0.80 16 3 H 0.09 0.83 7.79 -51.93 -0.40 0.43 16 4 O -0.35 -4.64 9.53 -55.09 -0.52 -5.17 16 5 C 0.09 0.86 6.03 37.16 0.22 1.08 16 6 C -0.15 -1.36 6.06 -90.62 -0.55 -1.91 16 7 C -0.18 -1.29 10.18 -26.73 -0.27 -1.56 16 8 C -0.17 -1.19 10.25 -26.73 -0.27 -1.46 16 9 C 0.51 8.02 7.18 -10.99 -0.08 7.94 16 10 O -0.53 -10.20 16.51 -14.30 -0.24 -10.44 16 11 N -0.71 -11.07 5.49 -61.47 -0.34 -11.41 16 12 C 0.11 1.85 6.15 -5.19 -0.03 1.82 16 13 C 0.44 9.50 7.85 -10.99 -0.09 9.41 16 14 O -0.58 -14.36 15.24 5.55 0.08 -14.27 16 15 N -0.58 -13.27 5.09 -10.97 -0.06 -13.33 16 16 C -0.31 -8.49 10.16 -14.94 -0.15 -8.64 16 17 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 18 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 19 N -0.87 -24.79 13.96 55.50 0.77 -24.01 16 20 Si 0.88 18.91 27.74 -169.99 -4.71 14.20 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 24 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 27 H 0.06 0.47 8.08 -51.93 -0.42 0.06 16 28 H 0.05 0.41 7.61 -51.93 -0.39 0.02 16 29 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 0.62 8.03 -51.93 -0.42 0.21 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.41 6.18 7.22 -40.82 -0.29 5.89 16 35 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 38 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -33.06 329.22 -6.60 -39.66 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.50 Total: 12.58 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -1.05 Total: 7.24 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.38 Total: -48.76 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.68 Total: -29.88 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.06 -6.60 -39.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.210 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds