Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99710 * 2 1 3 5 5 C 1.42899 * 114.00172 * 269.99873 * 4 2 1 6 6 C 1.52996 * 109.46966 * 180.02562 * 5 4 2 7 7 C 1.52997 * 117.49697 * 243.62383 * 6 5 4 8 8 C 1.53001 * 60.00190 * 252.51037 * 7 6 5 9 9 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 10 10 O 1.21274 * 120.00414 * 245.00531 * 9 2 1 11 11 N 1.34776 * 119.99626 * 65.00483 * 9 2 1 12 12 C 1.46500 * 120.00293 * 179.97438 * 11 9 2 13 13 C 1.50698 * 109.47431 * 179.97438 * 12 11 9 14 14 O 1.21286 * 119.99957 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99931 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00402 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99651 * 0.02562 * 16 15 13 18 18 C 1.38944 * 120.00557 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00272 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99807 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47351 * 89.99757 * 20 18 16 22 22 H 1.48502 * 109.47119 * 209.99677 * 20 18 16 23 23 H 1.48505 * 109.47198 * 329.99617 * 20 18 16 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 1.08994 * 109.46897 * 300.00216 * 5 4 2 28 28 H 1.09001 * 109.46938 * 60.00344 * 5 4 2 29 29 H 1.08999 * 115.55349 * 29.32847 * 6 5 4 30 30 H 1.09005 * 117.50399 * 359.97438 * 7 6 5 31 31 H 1.08996 * 117.50547 * 145.02017 * 7 6 5 32 32 H 1.09001 * 117.49534 * 252.51383 * 8 7 6 33 33 H 1.08998 * 117.50025 * 107.48854 * 8 7 6 34 34 H 0.97003 * 120.00627 * 359.97438 * 11 9 2 35 35 H 1.09001 * 109.46823 * 300.00504 * 12 11 9 36 36 H 1.09002 * 109.46583 * 59.99491 * 12 11 9 37 37 H 0.97004 * 119.99644 * 0.02562 * 15 13 12 38 38 H 0.97004 * 120.00172 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1830 2.2942 6 6 2.7090 -0.6406 3.4789 7 6 1.8136 -0.7257 4.7166 8 6 3.0909 0.1158 4.7529 9 6 2.0324 -0.7105 -1.2304 10 8 2.6529 -1.7467 -1.1214 11 7 1.7920 -0.1942 -2.4519 12 6 2.2808 -0.8845 -3.6481 13 6 1.8815 -0.1066 -4.8755 14 8 1.2512 0.9234 -4.7622 15 7 2.2258 -0.5549 -6.0990 16 6 1.8631 0.1530 -7.2156 17 1 1.3018 1.0702 -7.1148 18 6 2.2185 -0.3088 -8.4769 19 7 1.8704 0.3695 -9.5472 20 14 3.1900 -1.8947 -8.6513 21 1 2.2517 -3.0397 -8.7691 22 1 4.0394 -1.8238 -9.8674 23 1 4.0514 -2.0816 -7.4561 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.9319 0.9513 2.0451 28 1 1.2538 0.6547 2.5589 29 1 3.2970 -1.5214 3.2212 30 1 0.8621 -0.1947 4.6870 31 1 1.8122 -1.6627 5.2733 32 1 3.9298 -0.2678 5.3335 33 1 2.9796 1.2001 4.7470 34 1 1.2954 0.6344 -2.5392 35 1 3.3671 -0.9624 -3.6042 36 1 1.8465 -1.8832 -3.6941 37 1 2.7303 -1.3784 -6.1895 38 1 2.1182 0.0469 -10.4278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588077402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = -118.184541 kcal Electronic energy + Delta-G solvation = -20021.649661 eV Core-core repulsion = 16671.250631 eV Total energy + Delta-G solvation = -3350.399030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.26397 -40.22847 -39.13858 -37.45866 -36.30644 -35.40105 -33.84978 -32.63608 -29.39246 -28.05116 -26.49052 -24.69058 -23.23356 -21.81132 -21.49669 -21.33085 -20.53591 -18.66674 -18.26776 -17.48431 -16.97233 -16.75393 -16.70070 -16.19266 -16.04830 -15.74884 -15.19744 -15.08145 -14.77842 -14.31764 -14.07297 -13.92279 -13.84064 -13.41240 -13.20761 -12.97141 -12.66889 -12.45245 -12.37383 -12.01221 -11.98285 -11.58952 -11.43540 -11.31401 -10.88030 -10.67372 -10.43578 -10.34755 -10.22650 -8.46159 -6.08112 1.30603 1.33560 1.43191 1.48892 1.68024 1.78268 2.19778 2.63501 2.86809 3.01004 3.10035 3.59803 3.85241 3.93329 3.96800 4.00267 4.02054 4.15424 4.33475 4.38293 4.39107 4.48549 4.68964 4.70757 4.78546 4.79634 5.02255 5.15851 5.20083 5.24166 5.25637 5.47491 5.87409 6.08140 6.46625 6.48187 6.77350 7.09768 7.28623 7.76433 8.70086 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.049418 B = 0.002908 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.459450 B = 9627.295097 C = 9950.286355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.114 0.886 4 O -0.383 6.383 5 C 0.086 3.914 6 C -0.176 4.176 7 C -0.175 4.175 8 C -0.161 4.161 9 C 0.513 3.487 10 O -0.568 6.568 11 N -0.704 5.704 12 C 0.117 3.883 13 C 0.447 3.553 14 O -0.612 6.612 15 N -0.578 5.578 16 C -0.331 4.331 17 H 0.065 0.935 18 C -0.008 4.008 19 N -0.925 5.925 20 Si 0.958 3.042 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.233 1.233 24 H 0.082 0.918 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.416 0.584 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.392 0.608 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 -2.418 24.941 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 H 0.132 0.868 4 O -0.301 6.301 5 C 0.010 3.990 6 C -0.194 4.194 7 C -0.212 4.212 8 C -0.198 4.198 9 C 0.300 3.700 10 O -0.446 6.446 11 N -0.360 5.360 12 C -0.011 4.011 13 C 0.234 3.766 14 O -0.498 6.498 15 N -0.218 5.218 16 C -0.460 4.460 17 H 0.083 0.917 18 C -0.208 4.208 19 N -0.564 5.564 20 Si 0.778 3.222 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.157 1.157 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.255 0.745 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.227 0.773 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.426 -2.636 24.861 25.041 hybrid contribution 0.218 -0.146 -0.981 1.015 sum 1.644 -2.782 23.880 24.098 Atomic orbital electron populations 1.22230 0.91707 1.03568 1.04835 1.21906 0.96308 0.96659 0.83556 0.86815 1.88007 1.86843 1.35662 1.19630 1.22314 1.00309 0.91898 0.84432 1.22112 1.05490 1.02706 0.89117 1.23167 0.95512 1.02596 0.99907 1.23079 0.99266 0.99505 0.97973 1.20972 0.79079 0.85172 0.84805 1.90681 1.41775 1.25121 1.87073 1.45629 1.57611 1.28588 1.04193 1.20894 1.01530 0.96186 0.82454 1.20432 0.83956 0.87282 0.84931 1.90522 1.45362 1.27484 1.86445 1.41942 1.50602 1.24132 1.05138 1.19031 1.35061 1.07534 0.84336 0.91673 1.26053 0.98326 1.02519 0.93894 1.69776 1.46487 1.41100 0.99084 0.85457 0.79116 0.77624 0.80010 1.18136 1.19826 1.15688 0.89877 0.92342 0.88846 0.91929 0.90989 0.88668 0.87700 0.88351 0.87721 0.87331 0.74534 0.87885 0.87836 0.77252 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.48 71.98 0.68 -2.23 16 2 C 0.08 1.68 3.13 29.85 0.09 1.77 16 3 H 0.11 1.86 7.79 -2.39 -0.02 1.84 16 4 O -0.38 -9.52 9.53 -129.99 -1.24 -10.76 16 5 C 0.09 1.48 6.03 71.98 0.43 1.91 16 6 C -0.18 -2.94 6.06 -10.79 -0.07 -3.01 16 7 C -0.17 -2.21 10.18 30.59 0.31 -1.90 16 8 C -0.16 -1.86 10.25 30.60 0.31 -1.54 16 9 C 0.51 15.29 7.18 87.66 0.63 15.92 16 10 O -0.57 -21.39 16.51 15.98 0.26 -21.12 16 11 N -0.70 -20.99 5.49 -466.80 -2.56 -23.55 16 12 C 0.12 3.80 6.15 85.63 0.53 4.33 16 13 C 0.45 19.11 7.85 87.66 0.69 19.80 16 14 O -0.61 -30.71 15.24 -3.05 -0.05 -30.76 16 15 N -0.58 -26.31 5.09 -307.00 -1.56 -27.88 16 16 C -0.33 -18.58 10.16 84.04 0.85 -17.72 16 17 H 0.07 4.31 7.39 -2.91 -0.02 4.29 16 18 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 19 N -0.92 -53.97 13.96 21.66 0.30 -53.66 16 20 Si 0.96 37.96 27.74 68.60 1.90 39.86 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 23 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 24 H 0.08 1.37 7.92 -2.39 -0.02 1.35 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.18 7.87 -2.39 -0.02 1.16 16 27 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 28 H 0.07 0.92 7.61 -2.39 -0.02 0.90 16 29 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.10 1.11 8.03 -2.38 -0.02 1.09 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.42 11.94 7.22 -92.71 -0.67 11.27 16 35 H 0.10 3.07 8.14 -2.39 -0.02 3.06 16 36 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.39 15.02 5.76 -92.71 -0.53 14.48 16 38 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -74.76 329.22 1.81 -72.95 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.18 Total: 37.57 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 4.93 Total: 17.36 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.82 Total: -105.09 kcal Atomic # 8 Polarization: -61.62 SS G_CDS: -1.02 Total: -62.64 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 1.90 Total: 39.86 kcal Total: -74.76 1.81 -72.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.233 kcal (2) G-P(sol) polarization free energy of solvation -74.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds