Wall clock time and date at job start Mon Mar 30 2020 02:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 O 1.42896 * 109.47244 * 240.00142 * 2 1 3 5 5 C 1.42893 * 114.00183 * 89.99901 * 4 2 1 6 6 C 1.52998 * 109.47491 * 179.97438 * 5 4 2 7 7 C 1.52994 * 117.49988 * 243.74839 * 6 5 4 8 8 C 1.53005 * 117.50234 * 175.08681 * 6 5 4 9 9 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 10 10 O 1.21279 * 120.00113 * 120.00322 * 9 2 1 11 11 N 1.34784 * 119.99961 * 300.00090 * 9 2 1 12 12 C 1.46494 * 119.99635 * 180.02562 * 11 9 2 13 13 C 1.50707 * 109.47011 * 180.02562 * 12 11 9 14 14 O 1.21294 * 119.99820 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99914 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99647 * 179.97438 * 15 13 12 17 17 H 1.08002 * 120.00062 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99676 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99770 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47017 * 60.00263 * 20 18 16 22 22 H 1.48498 * 109.47024 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47114 * 300.00455 * 20 18 16 24 24 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 25 25 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 26 26 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47291 * 300.00314 * 5 4 2 28 28 H 1.09006 * 109.47017 * 59.99858 * 5 4 2 29 29 H 1.09006 * 115.54610 * 29.42067 * 6 5 4 30 30 H 1.08998 * 117.50435 * 0.02562 * 7 6 5 31 31 H 1.09001 * 117.49808 * 145.01824 * 7 6 5 32 32 H 1.08996 * 117.49830 * 214.98146 * 8 6 5 33 33 H 1.08998 * 117.49649 * 359.97438 * 8 6 5 34 34 H 0.96995 * 120.00015 * 359.72695 * 11 9 2 35 35 H 1.09005 * 109.47306 * 299.99972 * 12 11 9 36 36 H 1.09002 * 109.47518 * 60.00210 * 12 11 9 37 37 H 0.97000 * 120.00556 * 359.97438 * 15 13 12 38 38 H 0.96998 * 119.99972 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7092 -0.6405 -3.4788 7 6 4.1072 -0.3215 -4.0120 8 6 2.8700 0.0768 -4.8206 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6964 1.1193 11 7 1.7067 -0.2499 2.4546 12 6 2.1955 -0.9402 3.6507 13 6 1.6925 -0.2302 4.8813 14 8 0.9940 0.7552 4.7700 15 7 2.0188 -0.6902 6.1053 16 6 1.5616 -0.0440 7.2247 17 1 0.9403 0.8339 7.1256 18 6 1.8976 -0.5185 8.4868 19 7 2.6539 -1.5864 8.6074 20 14 1.2753 0.3623 10.0120 21 1 -0.2098 0.3623 10.0123 22 1 1.7710 -0.3372 11.2244 23 1 1.7703 1.7625 10.0116 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.2538 0.6547 -2.5588 28 1 2.9320 0.9514 -2.0449 29 1 2.3877 -1.6819 -3.5001 30 1 4.6646 0.4746 -3.5186 31 1 4.7055 -1.1530 -4.3846 32 1 2.6549 -0.4927 -5.7247 33 1 2.6128 1.1353 -4.8594 34 1 1.1523 0.5410 2.5436 35 1 1.8325 -1.9681 3.6509 36 1 3.2855 -0.9398 3.6506 37 1 2.5770 -1.4785 6.1944 38 1 2.8887 -1.9174 9.4884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:44 Heat of formation + Delta-G solvation = -100.843880 kcal Electronic energy + Delta-G solvation = -19983.905114 eV Core-core repulsion = 16634.258031 eV Total energy + Delta-G solvation = -3349.647082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.91973 -38.58592 -37.96595 -36.63214 -34.48021 -33.73417 -31.70121 -31.32622 -27.66482 -27.31184 -24.82355 -23.56608 -22.68197 -21.07063 -20.08448 -19.61162 -18.17178 -17.40845 -17.17692 -16.05434 -15.84364 -15.36239 -15.08196 -15.00158 -14.59321 -14.23362 -14.12330 -13.82621 -13.40368 -13.09721 -12.75928 -12.46455 -12.22215 -11.93748 -11.86037 -11.66767 -11.64373 -11.22162 -11.11578 -10.75634 -10.55190 -10.51977 -10.32838 -9.90736 -9.64297 -9.39224 -8.81775 -8.65540 -8.11976 -6.52795 -3.95089 2.75316 2.86644 3.12668 3.20690 3.24370 3.46364 3.72152 3.82199 4.10377 4.51024 4.58201 4.69371 4.76839 4.83772 4.87266 4.96284 5.04136 5.15639 5.17662 5.31509 5.36386 5.48295 5.56662 5.59532 5.79684 5.89408 5.92684 5.94782 5.98686 6.05319 6.63590 6.95797 7.44338 7.78106 7.90081 8.41021 8.45172 9.02741 9.37443 9.85132 10.63955 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.054889 B = 0.002765 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.998339 B =10123.097854 C =10382.468514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.074 3.926 3 H 0.087 0.913 4 O -0.354 6.354 5 C 0.090 3.910 6 C -0.151 4.151 7 C -0.177 4.177 8 C -0.175 4.175 9 C 0.512 3.488 10 O -0.528 6.528 11 N -0.705 5.705 12 C 0.110 3.890 13 C 0.428 3.572 14 O -0.598 6.598 15 N -0.548 5.548 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.410 0.590 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.396 0.604 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 3.321 -20.154 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 H 0.105 0.895 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.169 4.169 7 C -0.214 4.214 8 C -0.212 4.212 9 C 0.296 3.704 10 O -0.404 6.404 11 N -0.361 5.361 12 C -0.018 4.018 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.183 5.183 16 C -0.436 4.436 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.198 1.198 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.248 0.752 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.586 2.946 -20.102 20.325 hybrid contribution -0.196 0.509 0.957 1.101 sum -0.781 3.454 -19.145 19.470 Atomic orbital electron populations 1.22260 0.93451 1.03971 1.03281 1.21841 0.95140 0.96267 0.85498 0.89524 1.88031 1.86526 1.33909 1.18700 1.22109 0.99205 0.91991 0.85334 1.22107 1.00468 1.01125 0.93247 1.23083 0.90871 1.03638 1.03780 1.22989 1.02663 1.01061 0.94498 1.20263 0.80869 0.85130 0.84139 1.90708 1.37246 1.25811 1.86599 1.45623 1.53734 1.32503 1.04284 1.20960 0.99944 0.96649 0.84209 1.19723 0.86694 0.87705 0.84519 1.90489 1.43110 1.28868 1.86060 1.41794 1.44899 1.27415 1.04164 1.19683 1.29785 1.11159 0.82932 0.87706 1.25336 0.96546 0.96353 0.99475 1.69605 1.35755 1.22516 1.25541 0.85865 0.79169 0.79172 0.79708 1.19757 1.20844 1.19771 0.90426 0.91361 0.90996 0.92694 0.93041 0.86682 0.88620 0.88543 0.88416 0.88694 0.75150 0.89736 0.89791 0.76993 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.42 37.16 0.35 -1.42 16 2 C 0.07 0.92 3.14 -27.88 -0.09 0.84 16 3 H 0.09 0.88 7.79 -51.93 -0.40 0.47 16 4 O -0.35 -4.82 9.52 -55.14 -0.52 -5.35 16 5 C 0.09 0.89 6.03 37.16 0.22 1.12 16 6 C -0.15 -1.41 6.05 -90.62 -0.55 -1.96 16 7 C -0.18 -1.44 10.18 -26.70 -0.27 -1.72 16 8 C -0.18 -1.23 10.26 -26.69 -0.27 -1.50 16 9 C 0.51 8.41 7.23 -10.98 -0.08 8.33 16 10 O -0.53 -10.70 16.50 -14.35 -0.24 -10.94 16 11 N -0.71 -11.69 5.42 -61.47 -0.33 -12.02 16 12 C 0.11 2.03 6.15 -5.19 -0.03 2.00 16 13 C 0.43 9.74 7.85 -10.98 -0.09 9.65 16 14 O -0.60 -15.07 15.24 5.55 0.08 -14.99 16 15 N -0.55 -13.54 5.29 -10.96 -0.06 -13.60 16 16 C -0.31 -8.27 9.68 -14.93 -0.14 -8.42 16 17 H 0.11 2.93 7.16 -52.49 -0.38 2.56 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.82 13.05 55.50 0.72 -23.10 16 20 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H 0.08 0.76 7.57 -51.93 -0.39 0.36 16 25 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 28 H 0.05 0.47 7.82 -51.93 -0.41 0.06 16 29 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 0.75 8.03 -51.93 -0.42 0.33 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.41 6.48 6.86 -40.82 -0.28 6.20 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.40 9.43 7.90 -40.82 -0.32 9.11 16 38 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -32.04 331.56 -6.93 -38.96 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.51 Total: 13.13 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -1.05 Total: 7.50 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.33 Total: -48.72 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.68 Total: -31.28 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.04 -6.93 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.880 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds