Wall clock time and date at job start Mon Mar 30 2020 02:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 O 1.42896 * 109.47244 * 240.00142 * 2 1 3 5 5 C 1.42893 * 114.00183 * 89.99901 * 4 2 1 6 6 C 1.52998 * 109.47491 * 179.97438 * 5 4 2 7 7 C 1.52994 * 117.49988 * 243.74839 * 6 5 4 8 8 C 1.53005 * 117.50234 * 175.08681 * 6 5 4 9 9 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 10 10 O 1.21279 * 120.00113 * 120.00322 * 9 2 1 11 11 N 1.34784 * 119.99961 * 300.00090 * 9 2 1 12 12 C 1.46494 * 119.99635 * 180.02562 * 11 9 2 13 13 C 1.50707 * 109.47011 * 180.02562 * 12 11 9 14 14 O 1.21294 * 119.99820 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99914 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99647 * 179.97438 * 15 13 12 17 17 H 1.08002 * 120.00062 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99676 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99770 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47017 * 60.00263 * 20 18 16 22 22 H 1.48498 * 109.47024 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47114 * 300.00455 * 20 18 16 24 24 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 25 25 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 26 26 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47291 * 300.00314 * 5 4 2 28 28 H 1.09006 * 109.47017 * 59.99858 * 5 4 2 29 29 H 1.09006 * 115.54610 * 29.42067 * 6 5 4 30 30 H 1.08998 * 117.50435 * 0.02562 * 7 6 5 31 31 H 1.09001 * 117.49808 * 145.01824 * 7 6 5 32 32 H 1.08996 * 117.49830 * 214.98146 * 8 6 5 33 33 H 1.08998 * 117.49649 * 359.97438 * 8 6 5 34 34 H 0.96995 * 120.00015 * 359.72695 * 11 9 2 35 35 H 1.09005 * 109.47306 * 299.99972 * 12 11 9 36 36 H 1.09002 * 109.47518 * 60.00210 * 12 11 9 37 37 H 0.97000 * 120.00556 * 359.97438 * 15 13 12 38 38 H 0.96998 * 119.99972 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7092 -0.6405 -3.4788 7 6 4.1072 -0.3215 -4.0120 8 6 2.8700 0.0768 -4.8206 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6964 1.1193 11 7 1.7067 -0.2499 2.4546 12 6 2.1955 -0.9402 3.6507 13 6 1.6925 -0.2302 4.8813 14 8 0.9940 0.7552 4.7700 15 7 2.0188 -0.6902 6.1053 16 6 1.5616 -0.0440 7.2247 17 1 0.9403 0.8339 7.1256 18 6 1.8976 -0.5185 8.4868 19 7 2.6539 -1.5864 8.6074 20 14 1.2753 0.3623 10.0120 21 1 -0.2098 0.3623 10.0123 22 1 1.7710 -0.3372 11.2244 23 1 1.7703 1.7625 10.0116 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.2538 0.6547 -2.5588 28 1 2.9320 0.9514 -2.0449 29 1 2.3877 -1.6819 -3.5001 30 1 4.6646 0.4746 -3.5186 31 1 4.7055 -1.1530 -4.3846 32 1 2.6549 -0.4927 -5.7247 33 1 2.6128 1.1353 -4.8594 34 1 1.1523 0.5410 2.5436 35 1 1.8325 -1.9681 3.6509 36 1 3.2855 -0.9398 3.6506 37 1 2.5770 -1.4785 6.1944 38 1 2.8887 -1.9174 9.4884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588077403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:43 Heat of formation + Delta-G solvation = -123.185168 kcal Electronic energy + Delta-G solvation = -19984.873905 eV Core-core repulsion = 16634.258031 eV Total energy + Delta-G solvation = -3350.615873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.23287 -40.10722 -39.12385 -37.46072 -36.26360 -35.37993 -33.40591 -32.60204 -29.22108 -28.06350 -26.59199 -24.75454 -23.25151 -21.83083 -21.41100 -21.30027 -20.08990 -18.71261 -18.20367 -17.42588 -16.96351 -16.77265 -16.56001 -16.33554 -16.05313 -15.58755 -15.38302 -15.16679 -14.67715 -14.06560 -13.96483 -13.78710 -13.54261 -13.41673 -13.25016 -12.89631 -12.62228 -12.47196 -12.37274 -12.13724 -12.00589 -11.56276 -11.41037 -11.28796 -10.94788 -10.57647 -10.40678 -10.25024 -10.09512 -8.51166 -6.01695 1.37971 1.42847 1.48805 1.53754 1.71334 1.90140 2.28655 2.67648 2.98994 3.11968 3.15888 3.60400 3.85457 3.90128 3.96974 4.04376 4.13581 4.21245 4.34398 4.40669 4.41275 4.48116 4.67935 4.70764 4.78311 4.79697 5.01737 5.17491 5.21547 5.22864 5.25500 5.37918 5.90829 6.08798 6.44990 6.50868 7.02583 7.11420 7.43401 7.92919 8.65485 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.054889 B = 0.002765 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.998339 B =10123.097854 C =10382.468514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.078 3.922 3 H 0.116 0.884 4 O -0.384 6.384 5 C 0.086 3.914 6 C -0.174 4.174 7 C -0.186 4.186 8 C -0.154 4.154 9 C 0.510 3.490 10 O -0.571 6.571 11 N -0.701 5.701 12 C 0.120 3.880 13 C 0.434 3.566 14 O -0.622 6.622 15 N -0.560 5.560 16 C -0.338 4.338 17 H 0.088 0.912 18 C -0.012 4.012 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.269 1.269 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.416 0.584 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.399 0.601 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 4.506 -21.023 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.017 3.983 3 H 0.133 0.867 4 O -0.302 6.302 5 C 0.010 3.990 6 C -0.192 4.192 7 C -0.223 4.223 8 C -0.190 4.190 9 C 0.297 3.703 10 O -0.450 6.450 11 N -0.357 5.357 12 C -0.007 4.007 13 C 0.221 3.779 14 O -0.510 6.510 15 N -0.195 5.195 16 C -0.467 4.467 17 H 0.106 0.894 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.194 1.194 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.255 0.745 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.233 0.767 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.090 4.139 -20.993 21.425 hybrid contribution -0.019 0.127 1.135 1.143 sum -1.109 4.267 -19.858 20.342 Atomic orbital electron populations 1.22247 0.91624 1.03584 1.04926 1.21896 0.96320 0.96615 0.83425 0.86677 1.88002 1.86844 1.35705 1.19700 1.22325 1.00582 0.91814 0.84254 1.22132 1.01618 1.00800 0.94649 1.23173 0.90907 1.03908 1.04304 1.23085 1.00654 1.01756 0.93537 1.21069 0.79754 0.84569 0.84928 1.90685 1.39257 1.27855 1.87173 1.45610 1.53692 1.32487 1.03927 1.20783 1.00362 0.96552 0.83034 1.20342 0.85363 0.87068 0.85108 1.90466 1.43915 1.29953 1.86649 1.41854 1.45473 1.27692 1.04465 1.19720 1.31007 1.11592 0.84357 0.89385 1.26156 0.96331 0.96900 1.01845 1.69676 1.36203 1.23323 1.26466 0.84913 0.78643 0.78128 0.76221 1.19408 1.19743 1.19405 0.89838 0.88631 0.92407 0.90564 0.92246 0.88222 0.88392 0.88496 0.87350 0.87203 0.74486 0.88930 0.88867 0.76738 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.42 71.98 0.68 -2.40 16 2 C 0.08 1.83 3.14 29.85 0.09 1.92 16 3 H 0.12 2.01 7.79 -2.39 -0.02 1.99 16 4 O -0.38 -10.05 9.52 -129.94 -1.24 -11.29 16 5 C 0.09 1.55 6.03 71.98 0.43 1.98 16 6 C -0.17 -3.04 6.05 -10.79 -0.07 -3.11 16 7 C -0.19 -2.82 10.18 30.62 0.31 -2.51 16 8 C -0.15 -1.81 10.26 30.62 0.31 -1.50 16 9 C 0.51 16.40 7.23 87.66 0.63 17.03 16 10 O -0.57 -23.22 16.50 16.01 0.26 -22.95 16 11 N -0.70 -22.66 5.42 -466.77 -2.53 -25.19 16 12 C 0.12 4.41 6.15 85.64 0.53 4.94 16 13 C 0.43 19.80 7.85 87.66 0.69 20.48 16 14 O -0.62 -31.34 15.24 -3.07 -0.05 -31.39 16 15 N -0.56 -27.96 5.29 -306.97 -1.62 -29.58 16 16 C -0.34 -18.44 9.68 84.04 0.81 -17.62 16 17 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 18 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 19 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 20 Si 1.00 41.42 29.55 68.60 2.03 43.45 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H 0.08 1.45 7.57 -2.39 -0.02 1.43 16 25 H 0.09 1.26 7.87 -2.39 -0.02 1.24 16 26 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.08 1.01 7.87 -2.39 -0.02 0.99 16 28 H 0.06 0.95 7.82 -2.38 -0.02 0.93 16 29 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.10 1.42 8.03 -2.39 -0.02 1.40 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.42 12.66 6.86 -92.71 -0.64 12.03 16 35 H 0.09 3.28 8.14 -2.38 -0.02 3.27 16 36 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 38 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -68.78 331.56 1.75 -67.03 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.29 Total: 39.25 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 4.90 Total: 19.08 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -3.87 Total: -103.18 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: -1.02 Total: -65.63 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -68.78 1.75 -67.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.153 kcal (2) G-P(sol) polarization free energy of solvation -68.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds