Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.64163 * 61.68902 * 9 7 2 11 11 C 1.55158 * 110.71908 * 185.02365 * 9 7 2 12 12 C 1.54904 * 101.58215 * 153.86362 * 11 9 7 13 13 N 1.47425 * 104.83244 * 322.99050 * 12 11 9 14 14 C 1.34779 * 125.64697 * 204.08922 * 13 12 11 15 15 O 1.21587 * 119.99531 * 180.02562 * 14 13 12 16 16 N 1.34776 * 120.00258 * 0.04343 * 14 13 12 17 17 C 1.46505 * 119.99992 * 179.97438 * 16 14 13 18 18 H 1.08994 * 110.43089 * 36.09059 * 17 16 14 19 19 C 1.54808 * 110.48296 * 158.78094 * 17 16 14 20 20 C 1.54991 * 102.09297 * 97.79946 * 19 17 16 21 21 O 1.44378 * 103.49285 * 37.01572 * 20 19 17 22 22 C 1.43739 * 106.97869 * 319.94365 * 21 20 19 23 23 C 1.47016 * 108.70293 * 24.13023 * 13 12 11 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 0.96703 * 113.99767 * 300.69875 * 10 9 7 26 26 H 1.08996 * 111.00679 * 271.93855 * 11 9 7 27 27 H 1.09004 * 111.00439 * 35.78697 * 11 9 7 28 28 H 1.08997 * 110.37061 * 204.15256 * 12 11 9 29 29 H 1.09005 * 110.45976 * 81.87362 * 12 11 9 30 30 H 0.96999 * 119.99566 * 0.02562 * 16 14 13 31 31 H 1.09008 * 110.90334 * 215.99171 * 19 17 16 32 32 H 1.09000 * 110.91219 * 339.59581 * 19 17 16 33 33 H 1.09005 * 110.61609 * 278.51651 * 20 19 17 34 34 H 1.09003 * 110.75674 * 155.58369 * 20 19 17 35 35 H 1.09001 * 109.88219 * 267.08909 * 22 21 20 36 36 H 1.08997 * 109.88207 * 145.93484 * 22 21 20 37 37 H 1.09004 * 109.88338 * 239.52489 * 23 13 12 38 38 H 1.08996 * 109.89002 * 118.35853 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4504 -2.6186 -1.1770 11 6 2.2286 -3.6973 0.1283 12 6 1.3207 -4.7715 0.7773 13 7 0.4643 -4.0245 1.7165 14 6 -0.1419 -4.5381 2.8052 15 8 -0.8288 -3.8254 3.5114 16 7 0.0136 -5.8414 3.1113 17 6 -0.6450 -6.3994 4.2950 18 1 -1.6228 -5.9399 4.4386 19 6 -0.7787 -7.9364 4.1665 20 6 0.4376 -8.4378 4.9859 21 8 0.5127 -7.5031 6.0837 22 6 0.2336 -6.1999 5.5453 23 6 0.3803 -2.6269 1.2682 24 1 -0.4850 -0.8401 -0.0004 25 1 -0.2035 -1.9138 -1.2812 26 1 2.5789 -4.0219 -0.8515 27 1 3.0673 -3.4496 0.7789 28 1 1.9237 -5.5038 1.3142 29 1 0.7122 -5.2647 0.0192 30 1 0.5620 -6.4097 2.5482 31 1 -1.7137 -8.2835 4.6064 32 1 -0.7012 -8.2479 3.1249 33 1 1.3469 -8.3989 4.3859 34 1 0.2650 -9.4492 5.3539 35 1 1.1650 -5.7058 5.2688 36 1 -0.3014 -5.6011 6.2824 37 1 0.7592 -1.9645 2.0465 38 1 -0.6539 -2.3740 1.0345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591990467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = -116.167508 kcal Electronic energy + Delta-G solvation = -21601.311487 eV Core-core repulsion = 18250.999922 eV Total energy + Delta-G solvation = -3350.311565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.31337 -39.15789 -37.62100 -34.68388 -34.43117 -32.28937 -31.10954 -30.08288 -28.70791 -27.58331 -25.01285 -23.13885 -22.67186 -21.32909 -20.04690 -19.66421 -18.27448 -17.50587 -16.77691 -16.33978 -15.64962 -15.38493 -15.06729 -14.68015 -14.21127 -13.89456 -13.73970 -13.48416 -13.27229 -12.98101 -12.57663 -12.15828 -12.07789 -11.83367 -11.56064 -11.35049 -11.14708 -11.10236 -10.88364 -10.73881 -10.56889 -10.16982 -9.92054 -9.79552 -9.38616 -9.06757 -8.67090 -8.32710 -8.01210 -6.58599 -4.42250 2.86196 3.35586 3.35970 3.49761 3.55563 3.76336 4.21433 4.29280 4.37244 4.62583 4.75813 4.94788 4.96250 5.14066 5.18242 5.40138 5.43419 5.49411 5.56311 5.61426 5.71302 5.78022 5.78931 5.89116 6.23345 6.44201 6.53490 6.61835 6.68823 6.73056 6.88659 7.02953 7.36849 7.75884 8.13709 8.31916 8.52620 8.88868 8.91256 9.30089 10.71560 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033829 B = 0.004428 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.483428 B = 6322.404490 C = 6565.117862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.029 3.971 3 Si 1.073 2.927 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.614 4.614 8 H 0.062 0.938 9 C 0.228 3.772 10 O -0.585 6.585 11 C -0.108 4.108 12 C 0.102 3.898 13 N -0.627 5.627 14 C 0.716 3.284 15 O -0.592 6.592 16 N -0.743 5.743 17 C 0.133 3.867 18 H 0.103 0.897 19 C -0.162 4.162 20 C 0.045 3.955 21 O -0.379 6.379 22 C 0.035 3.965 23 C 0.110 3.890 24 H 0.267 0.733 25 H 0.372 0.628 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.394 0.606 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 -15.070 5.036 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.176 4.176 3 Si 0.900 3.100 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.652 4.652 8 H 0.080 0.920 9 C 0.188 3.812 10 O -0.393 6.393 11 C -0.146 4.146 12 C -0.022 4.022 13 N -0.364 5.364 14 C 0.418 3.582 15 O -0.471 6.471 16 N -0.401 5.401 17 C 0.026 3.974 18 H 0.121 0.879 19 C -0.200 4.200 20 C -0.032 4.032 21 O -0.297 6.297 22 C -0.043 4.043 23 C -0.013 4.013 24 H 0.081 0.919 25 H 0.221 0.779 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.228 0.772 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.951 -13.498 5.755 14.705 hybrid contribution 0.082 -1.424 -0.412 1.485 sum 1.033 -14.922 5.342 15.883 Atomic orbital electron populations 1.71004 1.06833 1.30468 1.45724 1.26024 0.96386 1.03223 0.91980 0.83466 0.74949 0.74794 0.76757 1.20495 1.21144 1.21146 1.22310 0.94995 0.90914 1.57021 0.92021 1.19803 0.86911 0.93874 0.80632 1.86255 1.53485 1.53850 1.45729 1.22635 0.97197 0.94384 1.00341 1.22277 0.92721 0.95199 0.91958 1.47858 1.50813 1.12612 1.25151 1.15519 0.80312 0.81616 0.80767 1.90904 1.44505 1.59226 1.52452 1.45212 1.55662 1.09402 1.29811 1.22054 0.97494 0.93168 0.84639 0.87853 1.23428 1.00335 0.94168 1.02101 1.23567 0.96836 0.94224 0.88536 1.88888 1.92183 1.17054 1.31601 1.23757 0.99374 0.85385 0.95810 1.23133 1.00503 0.78651 0.99027 0.91910 0.77851 0.90387 0.90219 0.92369 0.91865 0.77167 0.88978 0.89399 0.92200 0.88768 0.91676 0.88908 0.91079 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.17 12.97 55.43 0.72 -24.45 16 2 C 0.03 0.78 5.26 -17.82 -0.09 0.68 16 3 Si 1.07 23.83 29.90 -169.99 -5.08 18.75 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.61 -16.15 8.12 -34.44 -0.28 -16.43 16 8 H 0.06 1.60 7.78 -52.49 -0.41 1.19 16 9 C 0.23 5.42 0.82 -89.94 -0.07 5.35 16 10 O -0.58 -14.29 13.09 -35.23 -0.46 -14.75 16 11 C -0.11 -2.08 6.23 -24.58 -0.15 -2.24 16 12 C 0.10 1.69 6.57 -2.53 -0.02 1.68 16 13 N -0.63 -12.56 3.33 -176.24 -0.59 -13.15 16 14 C 0.72 13.91 8.48 -86.92 -0.74 13.17 16 15 O -0.59 -13.80 16.38 5.29 0.09 -13.72 16 16 N -0.74 -10.43 4.97 -57.18 -0.28 -10.71 16 17 C 0.13 1.63 3.35 -66.40 -0.22 1.41 16 18 H 0.10 1.42 7.66 -51.93 -0.40 1.02 16 19 C -0.16 -1.38 6.78 -24.73 -0.17 -1.55 16 20 C 0.05 0.39 7.72 38.21 0.29 0.69 16 21 O -0.38 -4.65 11.52 -35.23 -0.41 -5.06 16 22 C 0.03 0.45 7.50 37.73 0.28 0.73 16 23 C 0.11 2.61 5.10 -3.07 -0.02 2.60 16 24 H 0.27 7.32 3.86 -40.82 -0.16 7.16 16 25 H 0.37 9.19 6.54 45.56 0.30 9.49 16 26 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 27 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 28 H 0.06 0.76 7.30 -51.93 -0.38 0.38 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.39 4.53 7.01 -40.82 -0.29 4.24 16 31 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.09 0.64 7.96 -51.93 -0.41 0.23 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.88 7.81 -51.93 -0.41 1.47 16 38 H 0.05 1.40 6.83 -51.93 -0.35 1.04 16 LS Contribution 306.99 15.07 4.63 4.63 Total: -1.00 -31.67 306.99 -7.24 -38.90 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -4.67 Total: 13.48 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.18 Total: 6.08 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.15 Total: -48.31 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.78 Total: -33.53 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.08 Total: 18.75 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.67 -7.24 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.265 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds