Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.64163 * 61.68902 * 9 7 2 11 11 C 1.55158 * 110.71908 * 185.02365 * 9 7 2 12 12 C 1.54904 * 101.58215 * 153.86362 * 11 9 7 13 13 N 1.47425 * 104.83244 * 322.99050 * 12 11 9 14 14 C 1.34779 * 125.64697 * 204.08922 * 13 12 11 15 15 O 1.21587 * 119.99531 * 180.02562 * 14 13 12 16 16 N 1.34776 * 120.00258 * 0.04343 * 14 13 12 17 17 C 1.46505 * 119.99992 * 179.97438 * 16 14 13 18 18 H 1.08994 * 110.43089 * 36.09059 * 17 16 14 19 19 C 1.54808 * 110.48296 * 158.78094 * 17 16 14 20 20 C 1.54991 * 102.09297 * 97.79946 * 19 17 16 21 21 O 1.44378 * 103.49285 * 37.01572 * 20 19 17 22 22 C 1.43739 * 106.97869 * 319.94365 * 21 20 19 23 23 C 1.47016 * 108.70293 * 24.13023 * 13 12 11 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 0.96703 * 113.99767 * 300.69875 * 10 9 7 26 26 H 1.08996 * 111.00679 * 271.93855 * 11 9 7 27 27 H 1.09004 * 111.00439 * 35.78697 * 11 9 7 28 28 H 1.08997 * 110.37061 * 204.15256 * 12 11 9 29 29 H 1.09005 * 110.45976 * 81.87362 * 12 11 9 30 30 H 0.96999 * 119.99566 * 0.02562 * 16 14 13 31 31 H 1.09008 * 110.90334 * 215.99171 * 19 17 16 32 32 H 1.09000 * 110.91219 * 339.59581 * 19 17 16 33 33 H 1.09005 * 110.61609 * 278.51651 * 20 19 17 34 34 H 1.09003 * 110.75674 * 155.58369 * 20 19 17 35 35 H 1.09001 * 109.88219 * 267.08909 * 22 21 20 36 36 H 1.08997 * 109.88207 * 145.93484 * 22 21 20 37 37 H 1.09004 * 109.88338 * 239.52489 * 23 13 12 38 38 H 1.08996 * 109.89002 * 118.35853 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4504 -2.6186 -1.1770 11 6 2.2286 -3.6973 0.1283 12 6 1.3207 -4.7715 0.7773 13 7 0.4643 -4.0245 1.7165 14 6 -0.1419 -4.5381 2.8052 15 8 -0.8288 -3.8254 3.5114 16 7 0.0136 -5.8414 3.1113 17 6 -0.6450 -6.3994 4.2950 18 1 -1.6228 -5.9399 4.4386 19 6 -0.7787 -7.9364 4.1665 20 6 0.4376 -8.4378 4.9859 21 8 0.5127 -7.5031 6.0837 22 6 0.2336 -6.1999 5.5453 23 6 0.3803 -2.6269 1.2682 24 1 -0.4850 -0.8401 -0.0004 25 1 -0.2035 -1.9138 -1.2812 26 1 2.5789 -4.0219 -0.8515 27 1 3.0673 -3.4496 0.7789 28 1 1.9237 -5.5038 1.3142 29 1 0.7122 -5.2647 0.0192 30 1 0.5620 -6.4097 2.5482 31 1 -1.7137 -8.2835 4.6064 32 1 -0.7012 -8.2479 3.1249 33 1 1.3469 -8.3989 4.3859 34 1 0.2650 -9.4492 5.3539 35 1 1.1650 -5.7058 5.2688 36 1 -0.3014 -5.6011 6.2824 37 1 0.7592 -1.9645 2.0465 38 1 -0.6539 -2.3740 1.0345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591990467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = -141.468382 kcal Electronic energy + Delta-G solvation = -21602.408616 eV Core-core repulsion = 18250.999922 eV Total energy + Delta-G solvation = -3351.408693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66579 -40.39322 -39.23750 -36.44857 -35.68304 -34.30727 -32.35322 -31.37482 -29.86416 -29.20228 -26.91105 -24.46955 -23.74947 -22.38778 -21.65710 -21.24632 -20.10878 -19.08554 -17.92803 -17.42404 -17.04036 -16.74184 -16.33884 -16.09836 -15.70060 -15.69667 -15.37755 -14.94346 -14.77535 -14.23558 -13.99573 -13.83034 -13.25710 -13.01480 -12.83586 -12.75534 -12.62341 -12.41081 -12.37037 -12.26283 -12.14676 -11.94566 -11.44891 -11.26296 -10.77735 -10.67008 -10.39579 -10.28334 -9.60232 -8.68258 -6.53786 1.44875 1.55120 1.60706 1.80360 1.97264 2.51959 2.82916 2.97190 3.01890 3.44055 3.57664 3.78800 3.84843 3.89544 3.92510 4.15921 4.22334 4.26661 4.40900 4.46622 4.66421 4.69964 4.79955 4.83723 4.85974 4.91304 4.99683 5.06988 5.09678 5.30859 5.34995 5.76362 5.80542 5.97826 6.06377 6.43398 6.88138 6.91592 7.26747 7.41222 8.62366 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033829 B = 0.004428 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.483428 B = 6322.404490 C = 6565.117862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.016 4.016 3 Si 1.116 2.884 4 H -0.286 1.286 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.629 4.629 8 H 0.062 0.938 9 C 0.212 3.788 10 O -0.585 6.585 11 C -0.104 4.104 12 C 0.107 3.893 13 N -0.632 5.632 14 C 0.711 3.289 15 O -0.639 6.639 16 N -0.718 5.718 17 C 0.126 3.874 18 H 0.085 0.915 19 C -0.147 4.147 20 C 0.039 3.961 21 O -0.394 6.394 22 C 0.039 3.961 23 C 0.128 3.872 24 H 0.260 0.740 25 H 0.366 0.634 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.411 0.589 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.602 -17.607 4.770 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.216 4.216 3 Si 0.937 3.063 4 H -0.211 1.211 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.667 4.667 8 H 0.080 0.920 9 C 0.172 3.828 10 O -0.393 6.393 11 C -0.141 4.141 12 C -0.015 4.015 13 N -0.369 5.369 14 C 0.413 3.587 15 O -0.521 6.521 16 N -0.376 5.376 17 C 0.020 3.980 18 H 0.103 0.897 19 C -0.185 4.185 20 C -0.036 4.036 21 O -0.314 6.314 22 C -0.039 4.039 23 C 0.003 3.997 24 H 0.073 0.927 25 H 0.215 0.785 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.249 0.751 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.288 -16.132 5.476 17.189 hybrid contribution -0.328 -0.704 -0.294 0.831 sum 1.960 -16.837 5.181 17.725 Atomic orbital electron populations 1.71078 1.07758 1.30230 1.47587 1.27288 0.96474 1.06590 0.91277 0.82934 0.74189 0.71257 0.77912 1.21117 1.19849 1.19195 1.22685 0.95287 0.92337 1.56409 0.91986 1.19998 0.87530 0.95180 0.80047 1.86237 1.53406 1.53532 1.46080 1.22646 0.96701 0.93152 1.01639 1.22454 0.92311 0.94749 0.91970 1.47791 1.51672 1.11418 1.26029 1.15747 0.79818 0.82977 0.80138 1.90871 1.46475 1.60893 1.53886 1.44997 1.55077 1.07327 1.30162 1.22219 0.96248 0.95818 0.83681 0.89662 1.23424 1.01070 0.90427 1.03610 1.23858 0.97329 0.94558 0.87900 1.88881 1.92226 1.17046 1.33212 1.23579 0.98576 0.85946 0.95821 1.22591 0.98416 0.80586 0.98105 0.92704 0.78493 0.88894 0.89839 0.87627 0.90576 0.75117 0.87557 0.87250 0.91106 0.86290 0.93082 0.89794 0.94833 0.95700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.38 12.97 21.45 0.28 -53.10 16 2 C -0.02 -0.89 5.26 84.65 0.45 -0.44 16 3 Si 1.12 48.17 29.90 68.60 2.05 50.22 16 4 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.63 -33.36 8.12 25.60 0.21 -33.15 16 8 H 0.06 3.20 7.78 -2.91 -0.02 3.18 16 9 C 0.21 10.15 0.82 -10.35 -0.01 10.14 16 10 O -0.59 -28.80 13.09 -148.98 -1.95 -30.75 16 11 C -0.10 -3.80 6.23 31.98 0.20 -3.60 16 12 C 0.11 3.23 6.57 86.85 0.57 3.81 16 13 N -0.63 -24.97 3.33 -829.77 -2.76 -27.73 16 14 C 0.71 27.39 8.48 179.05 1.52 28.91 16 15 O -0.64 -30.69 16.38 -3.99 -0.07 -30.76 16 16 N -0.72 -18.65 4.97 -453.08 -2.25 -20.91 16 17 C 0.13 2.90 3.35 45.98 0.15 3.06 16 18 H 0.09 2.32 7.66 -2.39 -0.02 2.30 16 19 C -0.15 -1.99 6.78 31.89 0.22 -1.77 16 20 C 0.04 0.55 7.72 72.66 0.56 1.11 16 21 O -0.39 -8.92 11.52 -148.98 -1.72 -10.64 16 22 C 0.04 0.97 7.50 72.36 0.54 1.52 16 23 C 0.13 6.29 5.10 86.73 0.44 6.73 16 24 H 0.26 14.91 3.86 -92.70 -0.36 14.55 16 25 H 0.37 18.71 6.54 -74.06 -0.48 18.23 16 26 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 27 H 0.08 2.99 8.04 -2.39 -0.02 2.97 16 28 H 0.11 2.24 7.30 -2.39 -0.02 2.22 16 29 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.41 7.85 7.01 -92.71 -0.65 7.20 16 31 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.11 1.07 7.96 -2.39 -0.02 1.05 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.40 7.93 -2.39 -0.02 1.38 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.03 1.86 7.81 -2.38 -0.02 1.84 16 38 H 0.02 1.34 6.83 -2.39 -0.02 1.33 16 Total: -1.00 -71.60 306.99 -1.20 -72.80 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.36 Total: 34.56 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 4.85 Total: 16.30 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -4.74 Total: -101.73 kcal Atomic # 8 Polarization: -68.42 SS G_CDS: -3.73 Total: -72.15 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.05 Total: 50.22 kcal Total: -71.60 -1.20 -72.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.665 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds