Wall clock time and date at job start Mon Mar 30 2020 00:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00207 * 2 1 4 4 H 1.48491 * 109.47088 * 274.98625 * 3 2 1 5 5 H 1.48500 * 109.46752 * 34.98962 * 3 2 1 6 6 H 1.48501 * 109.46627 * 154.98410 * 3 2 1 7 7 C 1.37882 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00158 * 185.99156 * 7 2 1 9 9 C 1.50703 * 120.00072 * 5.99438 * 7 2 1 10 10 O 1.42899 * 110.77935 * 294.99840 * 9 7 2 11 11 C 1.55155 * 110.72201 * 171.75899 * 9 7 2 12 12 C 1.55124 * 101.48757 * 205.97139 * 11 9 7 13 13 N 1.47424 * 104.72354 * 37.29154 * 12 11 9 14 14 C 1.34777 * 125.64855 * 155.81797 * 13 12 11 15 15 O 1.21590 * 119.99907 * 179.69508 * 14 13 12 16 16 N 1.34778 * 120.00199 * 359.69296 * 14 13 12 17 17 C 1.46498 * 120.00399 * 179.97438 * 16 14 13 18 18 H 1.09008 * 110.56290 * 327.68268 * 17 16 14 19 19 C 1.54507 * 110.51484 * 205.00304 * 17 16 14 20 20 C 1.54479 * 104.18388 * 241.28732 * 19 17 16 21 21 O 1.44643 * 104.69750 * 336.18880 * 20 19 17 22 22 C 1.44423 * 105.36792 * 40.34411 * 21 20 19 23 23 C 1.47018 * 108.70410 * 335.55755 * 13 12 11 24 24 H 0.97000 * 119.99799 * 359.97438 * 1 2 3 25 25 H 0.96698 * 114.00025 * 61.78464 * 10 9 7 26 26 H 1.09005 * 110.99918 * 324.21206 * 11 9 7 27 27 H 1.09000 * 111.00194 * 88.01828 * 11 9 7 28 28 H 1.09001 * 110.49517 * 278.45517 * 12 11 9 29 29 H 1.08996 * 110.34837 * 156.05591 * 12 11 9 30 30 H 0.97003 * 119.99372 * 0.02562 * 16 14 13 31 31 H 1.09006 * 110.50633 * 359.97438 * 19 17 16 32 32 H 1.08997 * 110.51295 * 122.57048 * 19 17 16 33 33 H 1.09000 * 110.37176 * 94.91860 * 20 19 17 34 34 H 1.08999 * 110.36906 * 217.25146 * 20 19 17 35 35 H 1.08998 * 110.37129 * 200.73230 * 22 21 20 36 36 H 1.08996 * 110.37289 * 78.40286 * 22 21 20 37 37 H 1.09003 * 109.88493 * 120.70544 * 23 13 12 38 38 H 1.09000 * 109.88343 * 241.86393 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3914 2.1072 -1.3947 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4119 0.5921 7 6 2.0045 -1.1941 -0.0005 8 1 3.0801 -1.1968 0.0971 9 6 1.2571 -2.4956 -0.1374 10 8 0.4086 -2.7141 0.9914 11 6 2.2440 -3.6789 -0.3195 12 6 1.3642 -4.6995 -1.0879 13 7 0.5497 -3.8785 -2.0022 14 6 -0.0079 -4.3031 -3.1534 15 8 -0.6676 -3.5365 -3.8284 16 7 0.1657 -5.5775 -3.5564 17 6 -0.4408 -6.0392 -4.8075 18 1 -1.3832 -5.5225 -4.9897 19 6 -0.6600 -7.5682 -4.7709 20 6 0.2020 -8.1022 -5.9362 21 8 0.3350 -6.9797 -6.8387 22 6 0.5301 -5.8274 -5.9902 23 6 0.4411 -2.5215 -1.4470 24 1 -0.4850 0.8401 0.0004 25 1 -0.2771 -2.0416 1.1040 26 1 3.1085 -3.3790 -0.9120 27 1 2.5545 -4.0806 0.6451 28 1 0.7232 -5.2472 -0.3971 29 1 1.9904 -5.3894 -1.6537 30 1 0.6917 -6.1891 -3.0177 31 1 -0.3167 -7.9806 -3.8221 32 1 -1.7111 -7.8073 -4.9325 33 1 1.1811 -8.4137 -5.5722 34 1 -0.3015 -8.9326 -6.4311 35 1 0.2792 -4.9132 -6.5281 36 1 1.5594 -5.7885 -5.6338 37 1 0.8498 -1.7984 -2.1529 38 1 -0.6031 -2.2890 -1.2379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591990468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:22 Heat of formation + Delta-G solvation = -118.008556 kcal Electronic energy + Delta-G solvation = -21484.207686 eV Core-core repulsion = 18133.816288 eV Total energy + Delta-G solvation = -3350.391399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.15825 -39.01581 -37.32777 -34.39759 -34.25009 -32.25740 -31.02326 -29.94215 -28.53393 -27.65863 -25.01688 -23.23019 -22.65425 -21.18753 -19.84119 -19.55862 -17.68627 -17.08078 -16.61662 -16.26467 -15.56373 -15.33452 -15.03086 -14.72697 -14.40274 -13.97568 -13.45857 -13.26867 -12.93691 -12.89213 -12.41592 -12.06186 -11.89850 -11.68468 -11.56609 -11.38790 -11.12929 -11.04928 -10.82161 -10.70279 -10.49344 -10.19533 -10.01241 -9.68724 -9.33447 -8.94496 -8.68438 -8.32847 -7.82937 -6.29790 -4.37619 2.96824 3.21434 3.29263 3.31484 3.61808 3.87058 4.26047 4.33843 4.42939 4.65198 4.79291 4.98743 5.01707 5.14196 5.32367 5.43548 5.48524 5.63274 5.67203 5.71473 5.80664 5.85125 5.96930 6.07292 6.43015 6.47719 6.68125 6.77741 6.85289 6.93143 7.20946 7.30367 7.57202 7.72020 8.02682 8.44999 8.66247 9.04243 9.27384 9.38332 10.78322 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033319 B = 0.004383 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.166650 B = 6386.621056 C = 6687.057720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.629 5.629 14 C 0.715 3.285 15 O -0.595 6.595 16 N -0.743 5.743 17 C 0.134 3.866 18 H 0.104 0.896 19 C -0.163 4.163 20 C 0.045 3.955 21 O -0.376 6.376 22 C 0.033 3.967 23 C 0.123 3.877 24 H 0.270 0.730 25 H 0.382 0.618 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.394 0.606 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 -14.260 -6.125 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.021 4.021 13 N -0.366 5.366 14 C 0.417 3.583 15 O -0.473 6.473 16 N -0.401 5.401 17 C 0.027 3.973 18 H 0.122 0.878 19 C -0.202 4.202 20 C -0.032 4.032 21 O -0.294 6.294 22 C -0.045 4.045 23 C 0.001 3.999 24 H 0.080 0.920 25 H 0.233 0.767 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.228 0.772 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.913 -14.091 -6.845 15.692 hybrid contribution 0.301 1.115 0.409 1.225 sum 1.214 -12.976 -6.436 14.535 Atomic orbital electron populations 1.69703 1.06038 1.27954 1.49313 1.25072 0.95013 0.99763 0.93343 0.86406 0.79877 0.82548 0.78206 1.20412 1.20994 1.19668 1.21487 0.94137 0.90183 1.51979 0.91509 1.19520 0.86185 0.91811 0.81783 1.86105 1.49032 1.54667 1.49645 1.22760 0.97552 0.95643 0.99409 1.22293 0.93342 0.94316 0.92124 1.47975 1.53292 1.14712 1.20613 1.15540 0.80159 0.81805 0.80828 1.90895 1.45492 1.54612 1.56321 1.45185 1.58279 1.11515 1.25145 1.22065 0.97761 0.93892 0.83540 0.87810 1.23227 1.02109 0.94781 1.00046 1.23435 0.98922 0.90532 0.90333 1.89176 1.93767 1.16681 1.29746 1.23962 0.99004 0.89908 0.91645 1.22855 1.01488 0.78828 0.96760 0.91988 0.76739 0.90430 0.90602 0.91930 0.92655 0.77155 0.89797 0.89521 0.92180 0.88911 0.88249 0.91822 0.91723 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.68 11.03 55.43 0.61 -23.07 16 2 C 0.07 1.86 5.22 -17.82 -0.09 1.77 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.97 8.14 -34.44 -0.28 -14.26 16 8 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 9 C 0.25 5.88 0.85 -89.94 -0.08 5.80 16 10 O -0.59 -14.45 13.08 -35.23 -0.46 -14.91 16 11 C -0.12 -2.23 6.24 -24.47 -0.15 -2.38 16 12 C 0.10 1.72 6.58 -2.41 -0.02 1.70 16 13 N -0.63 -12.72 3.32 -176.10 -0.59 -13.30 16 14 C 0.71 14.06 8.49 -86.92 -0.74 13.32 16 15 O -0.59 -14.05 16.32 5.29 0.09 -13.97 16 16 N -0.74 -10.57 5.04 -57.14 -0.29 -10.86 16 17 C 0.13 1.70 3.48 -66.37 -0.23 1.46 16 18 H 0.10 1.51 7.56 -51.92 -0.39 1.12 16 19 C -0.16 -1.45 6.84 -25.16 -0.17 -1.63 16 20 C 0.04 0.39 7.65 37.93 0.29 0.68 16 21 O -0.38 -4.64 11.65 -35.23 -0.41 -5.05 16 22 C 0.03 0.42 7.36 37.93 0.28 0.70 16 23 C 0.12 2.95 5.20 -3.06 -0.02 2.94 16 24 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.38 9.70 7.52 45.56 0.34 10.04 16 26 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.73 7.29 -51.93 -0.38 0.35 16 30 H 0.39 4.56 6.85 -40.82 -0.28 4.28 16 31 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 37 H 0.06 1.71 7.79 -51.93 -0.40 1.31 16 38 H 0.06 1.67 7.92 -51.93 -0.41 1.26 16 LS Contribution 311.04 15.07 4.69 4.69 Total: -1.00 -30.28 311.04 -7.43 -37.71 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -4.84 Total: 13.28 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -1.21 Total: 10.11 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.26 Total: -47.23 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.79 Total: -33.93 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.28 -7.43 -37.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.301 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds