Wall clock time and date at job start Mon Mar 30 2020 00:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00207 * 2 1 4 4 H 1.48491 * 109.47088 * 274.98625 * 3 2 1 5 5 H 1.48500 * 109.46752 * 34.98962 * 3 2 1 6 6 H 1.48501 * 109.46627 * 154.98410 * 3 2 1 7 7 C 1.37882 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00158 * 185.99156 * 7 2 1 9 9 C 1.50703 * 120.00072 * 5.99438 * 7 2 1 10 10 O 1.42899 * 110.77935 * 294.99840 * 9 7 2 11 11 C 1.55155 * 110.72201 * 171.75899 * 9 7 2 12 12 C 1.55124 * 101.48757 * 205.97139 * 11 9 7 13 13 N 1.47424 * 104.72354 * 37.29154 * 12 11 9 14 14 C 1.34777 * 125.64855 * 155.81797 * 13 12 11 15 15 O 1.21590 * 119.99907 * 179.69508 * 14 13 12 16 16 N 1.34778 * 120.00199 * 359.69296 * 14 13 12 17 17 C 1.46498 * 120.00399 * 179.97438 * 16 14 13 18 18 H 1.09008 * 110.56290 * 327.68268 * 17 16 14 19 19 C 1.54507 * 110.51484 * 205.00304 * 17 16 14 20 20 C 1.54479 * 104.18388 * 241.28732 * 19 17 16 21 21 O 1.44643 * 104.69750 * 336.18880 * 20 19 17 22 22 C 1.44423 * 105.36792 * 40.34411 * 21 20 19 23 23 C 1.47018 * 108.70410 * 335.55755 * 13 12 11 24 24 H 0.97000 * 119.99799 * 359.97438 * 1 2 3 25 25 H 0.96698 * 114.00025 * 61.78464 * 10 9 7 26 26 H 1.09005 * 110.99918 * 324.21206 * 11 9 7 27 27 H 1.09000 * 111.00194 * 88.01828 * 11 9 7 28 28 H 1.09001 * 110.49517 * 278.45517 * 12 11 9 29 29 H 1.08996 * 110.34837 * 156.05591 * 12 11 9 30 30 H 0.97003 * 119.99372 * 0.02562 * 16 14 13 31 31 H 1.09006 * 110.50633 * 359.97438 * 19 17 16 32 32 H 1.08997 * 110.51295 * 122.57048 * 19 17 16 33 33 H 1.09000 * 110.37176 * 94.91860 * 20 19 17 34 34 H 1.08999 * 110.36906 * 217.25146 * 20 19 17 35 35 H 1.08998 * 110.37129 * 200.73230 * 22 21 20 36 36 H 1.08996 * 110.37289 * 78.40286 * 22 21 20 37 37 H 1.09003 * 109.88493 * 120.70544 * 23 13 12 38 38 H 1.09000 * 109.88343 * 241.86393 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3914 2.1072 -1.3947 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4119 0.5921 7 6 2.0045 -1.1941 -0.0005 8 1 3.0801 -1.1968 0.0971 9 6 1.2571 -2.4956 -0.1374 10 8 0.4086 -2.7141 0.9914 11 6 2.2440 -3.6789 -0.3195 12 6 1.3642 -4.6995 -1.0879 13 7 0.5497 -3.8785 -2.0022 14 6 -0.0079 -4.3031 -3.1534 15 8 -0.6676 -3.5365 -3.8284 16 7 0.1657 -5.5775 -3.5564 17 6 -0.4408 -6.0392 -4.8075 18 1 -1.3832 -5.5225 -4.9897 19 6 -0.6600 -7.5682 -4.7709 20 6 0.2020 -8.1022 -5.9362 21 8 0.3350 -6.9797 -6.8387 22 6 0.5301 -5.8274 -5.9902 23 6 0.4411 -2.5215 -1.4470 24 1 -0.4850 0.8401 0.0004 25 1 -0.2771 -2.0416 1.1040 26 1 3.1085 -3.3790 -0.9120 27 1 2.5545 -4.0806 0.6451 28 1 0.7232 -5.2472 -0.3971 29 1 1.9904 -5.3894 -1.6537 30 1 0.6917 -6.1891 -3.0177 31 1 -0.3167 -7.9806 -3.8221 32 1 -1.7111 -7.8073 -4.9325 33 1 1.1811 -8.4137 -5.5722 34 1 -0.3015 -8.9326 -6.4311 35 1 0.2792 -4.9132 -6.5281 36 1 1.5594 -5.7885 -5.6338 37 1 0.8498 -1.7984 -2.1529 38 1 -0.6031 -2.2890 -1.2379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591990468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:22 Heat of formation + Delta-G solvation = -142.370454 kcal Electronic energy + Delta-G solvation = -21485.264097 eV Core-core repulsion = 18133.816288 eV Total energy + Delta-G solvation = -3351.447810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50354 -40.22056 -38.96628 -36.07015 -35.63640 -34.25116 -32.23267 -31.27537 -29.76276 -29.24129 -26.87340 -24.52039 -23.77603 -22.20655 -21.44003 -21.17596 -19.25493 -18.88777 -17.81285 -17.28403 -17.09521 -16.80433 -16.28086 -16.12676 -16.10474 -15.29091 -14.86906 -14.75147 -14.65966 -14.22737 -13.84498 -13.51184 -13.35745 -13.18671 -12.88451 -12.73854 -12.54397 -12.35581 -12.28342 -12.25256 -12.09148 -11.96611 -11.33943 -11.16397 -10.87029 -10.65142 -10.28735 -10.26762 -9.44182 -8.27464 -6.42186 1.40004 1.43333 1.52416 1.58125 2.07821 2.37477 2.88529 3.00372 3.16955 3.51335 3.79803 3.81621 3.96185 4.05546 4.17843 4.21491 4.26815 4.38527 4.59099 4.68105 4.71770 4.77161 4.85738 4.87396 5.04060 5.05238 5.13449 5.23184 5.34725 5.37759 5.51009 5.74222 5.80765 6.02795 6.15225 6.64851 7.02009 7.26731 7.36336 7.52118 8.78935 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033319 B = 0.004383 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.166650 B = 6386.621056 C = 6687.057720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.559 4.559 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.634 5.634 14 C 0.710 3.290 15 O -0.643 6.643 16 N -0.717 5.717 17 C 0.127 3.873 18 H 0.078 0.922 19 C -0.151 4.151 20 C 0.041 3.959 21 O -0.394 6.394 22 C 0.037 3.963 23 C 0.142 3.858 24 H 0.269 0.731 25 H 0.375 0.625 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.412 0.588 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.028 0.972 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 -16.765 -6.023 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.207 1.207 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.086 0.914 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.371 5.371 14 C 0.412 3.588 15 O -0.525 6.525 16 N -0.376 5.376 17 C 0.021 3.979 18 H 0.096 0.904 19 C -0.189 4.189 20 C -0.035 4.035 21 O -0.313 6.313 22 C -0.041 4.041 23 C 0.018 3.982 24 H 0.079 0.921 25 H 0.224 0.776 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.250 0.750 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.356 -16.681 -6.734 18.143 hybrid contribution -0.159 1.847 0.342 1.885 sum 2.196 -14.834 -6.392 16.301 Atomic orbital electron populations 1.69808 1.07156 1.28436 1.49893 1.25802 0.95730 1.02766 0.93112 0.85503 0.79060 0.78988 0.77881 1.20687 1.20731 1.18746 1.21845 0.94420 0.91523 1.51923 0.91425 1.19732 0.86751 0.93369 0.80973 1.86094 1.48942 1.54295 1.50136 1.22759 0.96975 0.94318 1.00798 1.22474 0.93169 0.93766 0.92042 1.47896 1.54084 1.13756 1.21356 1.15767 0.79675 0.83066 0.80284 1.90862 1.47521 1.56448 1.57687 1.44942 1.57580 1.09518 1.25517 1.22191 0.96523 0.96469 0.82693 0.90387 1.23209 1.03061 0.91237 1.01396 1.23714 1.00123 0.89833 0.89861 1.89164 1.93890 1.17422 1.30790 1.23796 0.99116 0.89769 0.91432 1.22314 0.98940 0.80476 0.96468 0.92134 0.77628 0.89799 0.89094 0.90842 0.87778 0.74993 0.87479 0.88513 0.90445 0.86755 0.90220 0.91255 0.95313 0.95488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.04 11.03 21.45 0.24 -49.80 16 2 C 0.03 1.43 5.22 84.66 0.44 1.87 16 3 Si 0.96 42.18 29.54 68.60 2.03 44.21 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.56 -29.17 8.14 25.60 0.21 -28.96 16 8 H 0.07 3.43 7.79 -2.91 -0.02 3.41 16 9 C 0.23 11.07 0.85 -10.35 -0.01 11.06 16 10 O -0.59 -29.19 13.08 -148.98 -1.95 -31.14 16 11 C -0.11 -4.03 6.24 32.06 0.20 -3.83 16 12 C 0.11 3.26 6.58 86.93 0.57 3.83 16 13 N -0.63 -25.29 3.32 -829.33 -2.76 -28.05 16 14 C 0.71 27.73 8.49 179.05 1.52 29.25 16 15 O -0.64 -31.43 16.32 -4.00 -0.07 -31.49 16 16 N -0.72 -18.90 5.04 -452.96 -2.28 -21.18 16 17 C 0.13 3.04 3.48 46.01 0.16 3.20 16 18 H 0.08 2.30 7.56 -2.38 -0.02 2.28 16 19 C -0.15 -2.17 6.84 31.61 0.22 -1.96 16 20 C 0.04 0.57 7.65 72.48 0.55 1.12 16 21 O -0.39 -9.01 11.65 -148.98 -1.74 -10.75 16 22 C 0.04 0.91 7.36 72.48 0.53 1.44 16 23 C 0.14 7.06 5.20 86.73 0.45 7.51 16 24 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.37 19.62 7.52 -74.06 -0.56 19.06 16 26 H 0.08 2.93 8.04 -2.38 -0.02 2.92 16 27 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.10 2.19 7.29 -2.39 -0.02 2.18 16 30 H 0.41 7.87 6.85 -92.71 -0.64 7.23 16 31 H 0.11 1.09 7.70 -2.38 -0.02 1.07 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.07 1.60 8.06 -2.39 -0.02 1.58 16 37 H 0.03 1.59 7.79 -2.39 -0.02 1.57 16 38 H 0.03 1.50 7.92 -2.39 -0.02 1.48 16 Total: -1.00 -68.73 311.04 -1.79 -70.52 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.11 Total: 33.15 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 4.85 Total: 24.54 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -4.80 Total: -99.03 kcal Atomic # 8 Polarization: -69.63 SS G_CDS: -3.75 Total: -73.38 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -68.73 -1.79 -70.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.853 kcal (2) G-P(sol) polarization free energy of solvation -68.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds