Wall clock time and date at job start Mon Mar 30 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99672 * 2 1 4 4 H 1.48500 * 109.47170 * 269.99921 * 3 2 1 5 5 H 1.48497 * 109.47372 * 29.99915 * 3 2 1 6 6 H 1.48498 * 109.46974 * 150.00301 * 3 2 1 7 7 C 1.37874 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00042 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.64084 * 298.31475 * 9 7 2 11 11 C 1.55157 * 110.87291 * 175.06924 * 9 7 2 12 12 C 1.55124 * 101.48746 * 205.90120 * 11 9 7 13 13 N 1.47424 * 104.72581 * 37.28923 * 12 11 9 14 14 C 1.34773 * 125.64847 * 155.81631 * 13 12 11 15 15 O 1.21593 * 119.99894 * 179.69706 * 14 13 12 16 16 N 1.34777 * 120.00097 * 359.42578 * 14 13 12 17 17 C 1.46504 * 119.99854 * 180.27545 * 16 14 13 18 18 H 1.08999 * 110.45620 * 32.39026 * 17 16 14 19 19 C 1.54510 * 110.50946 * 154.99963 * 17 16 14 20 20 C 1.54477 * 104.06352 * 118.64269 * 19 17 16 21 21 O 1.44430 * 104.80191 * 23.97550 * 20 19 17 22 22 C 1.44416 * 105.27522 * 319.48920 * 21 20 19 23 23 C 1.47023 * 108.69833 * 335.55877 * 13 12 11 24 24 H 0.96994 * 119.99928 * 359.97438 * 1 2 3 25 25 H 0.96696 * 114.00505 * 61.68688 * 10 9 7 26 26 H 1.09004 * 111.00311 * 324.13666 * 11 9 7 27 27 H 1.09001 * 111.00512 * 87.98687 * 11 9 7 28 28 H 1.09007 * 110.49220 * 278.45328 * 12 11 9 29 29 H 1.09004 * 110.34551 * 156.06055 * 12 11 9 30 30 H 0.97000 * 119.99736 * 0.26819 * 16 14 13 31 31 H 1.09001 * 110.50754 * 237.28812 * 19 17 16 32 32 H 1.08997 * 110.51445 * 359.85395 * 19 17 16 33 33 H 1.09004 * 110.36973 * 142.80589 * 20 19 17 34 34 H 1.08997 * 110.37319 * 265.03460 * 20 19 17 35 35 H 1.09000 * 110.37356 * 281.68169 * 22 21 20 36 36 H 1.09002 * 110.37089 * 159.34786 * 22 21 20 37 37 H 1.09003 * 109.88289 * 120.70155 * 23 13 12 38 38 H 1.09000 * 109.88003 * 241.85972 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4504 -2.6185 1.1770 11 6 2.2256 -3.7000 -0.1258 12 6 1.3107 -4.7743 -0.7702 13 7 0.4609 -4.0256 -1.7139 14 6 -0.1462 -4.5395 -2.8019 15 8 -0.8313 -3.8264 -3.5095 16 7 0.0105 -5.8425 -3.1087 17 6 -0.6446 -6.3997 -4.2947 18 1 -0.7136 -5.6475 -5.0806 19 6 0.1196 -7.6434 -4.8012 20 6 -0.9105 -8.7889 -4.6876 21 8 -2.1971 -8.1343 -4.7343 22 6 -2.0460 -6.9410 -3.9350 23 6 0.3804 -2.6269 -1.2681 24 1 -0.4850 0.8400 0.0004 25 1 -0.2276 -1.9344 1.2627 26 1 3.0651 -3.4556 -0.7767 27 1 2.5748 -4.0237 0.8547 28 1 0.6977 -5.2591 -0.0103 29 1 1.9102 -5.5125 -1.3030 30 1 0.5571 -6.4113 -2.5442 31 1 0.4263 -7.5070 -5.8383 32 1 0.9862 -7.8422 -4.1708 33 1 -0.8050 -9.4785 -5.5252 34 1 -0.7864 -9.3185 -3.7430 35 1 -2.0973 -7.1859 -2.8741 36 1 -2.8129 -6.2110 -4.1942 37 1 0.7613 -1.9669 -2.0475 38 1 -0.6532 -2.3710 -1.0353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591990470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:28 Heat of formation + Delta-G solvation = -118.028309 kcal Electronic energy + Delta-G solvation = -21470.574463 eV Core-core repulsion = 18120.182208 eV Total energy + Delta-G solvation = -3350.392255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16137 -39.02356 -37.32872 -34.39730 -34.26416 -32.23714 -31.02322 -29.93762 -28.53200 -27.65733 -25.02085 -23.22601 -22.65330 -21.18919 -19.83367 -19.54906 -17.68326 -17.10606 -16.61168 -16.25683 -15.60733 -15.31704 -14.92093 -14.81057 -14.38965 -13.98537 -13.47235 -13.22636 -12.95528 -12.89073 -12.32887 -12.22460 -11.79590 -11.69947 -11.51327 -11.44876 -11.11252 -11.03275 -10.82627 -10.70039 -10.50448 -10.19524 -10.00844 -9.68035 -9.33724 -8.94011 -8.69127 -8.33722 -7.82056 -6.29078 -4.37871 2.97485 3.21300 3.28715 3.31205 3.62233 3.88274 4.25727 4.34849 4.43101 4.65411 4.79641 4.98640 5.01870 5.14539 5.32615 5.43900 5.48662 5.63785 5.67114 5.72556 5.80954 5.85007 5.97334 6.07793 6.43752 6.47681 6.68168 6.78306 6.86043 6.94264 7.22694 7.29380 7.57927 7.72250 8.02145 8.45706 8.65770 9.04924 9.28089 9.36946 10.78778 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037729 B = 0.004244 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.965056 B = 6595.492105 C = 6805.937146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.629 5.629 14 C 0.715 3.285 15 O -0.595 6.595 16 N -0.743 5.743 17 C 0.134 3.866 18 H 0.104 0.896 19 C -0.163 4.163 20 C 0.045 3.955 21 O -0.375 6.375 22 C 0.033 3.967 23 C 0.123 3.877 24 H 0.270 0.730 25 H 0.382 0.618 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.394 0.606 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -14.527 -5.286 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.021 4.021 13 N -0.366 5.366 14 C 0.417 3.583 15 O -0.473 6.473 16 N -0.401 5.401 17 C 0.027 3.973 18 H 0.122 0.878 19 C -0.202 4.202 20 C -0.032 4.032 21 O -0.293 6.293 22 C -0.045 4.045 23 C 0.001 3.999 24 H 0.080 0.920 25 H 0.233 0.767 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.228 0.772 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.004 -14.462 -5.882 15.644 hybrid contribution 0.511 1.200 0.267 1.332 sum 1.515 -13.261 -5.614 14.480 Atomic orbital electron populations 1.69697 1.05992 1.27957 1.49539 1.25071 0.95047 0.99767 0.93348 0.86401 0.79787 0.82427 0.78294 1.20412 1.20976 1.19702 1.21485 0.93654 0.90086 1.52463 0.91553 1.19508 0.86554 0.92004 0.81209 1.86101 1.51825 1.56623 1.44832 1.22758 0.97346 0.95092 1.00167 1.22293 0.92788 0.95121 0.91873 1.47990 1.50753 1.13040 1.24829 1.15544 0.80338 0.81465 0.80998 1.90895 1.44765 1.59340 1.52317 1.45191 1.55855 1.09475 1.29628 1.22072 0.91301 0.95615 0.88286 0.87812 1.23228 0.99129 0.94626 1.03172 1.23391 0.82845 0.95076 1.01926 1.89150 1.31374 1.37245 1.71509 1.23963 0.98011 0.86940 0.95621 1.22884 1.01529 0.77139 0.98382 0.91973 0.76736 0.90463 0.90589 0.91936 0.92665 0.77168 0.89531 0.89796 0.88957 0.92195 0.91800 0.88246 0.91713 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.72 10.96 55.43 0.61 -23.11 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.94 8.13 -34.44 -0.28 -14.22 16 8 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 9 C 0.25 5.89 0.85 -89.94 -0.08 5.81 16 10 O -0.58 -14.44 13.07 -35.23 -0.46 -14.90 16 11 C -0.12 -2.23 6.24 -24.47 -0.15 -2.38 16 12 C 0.10 1.72 6.58 -2.41 -0.02 1.70 16 13 N -0.63 -12.73 3.32 -176.10 -0.59 -13.31 16 14 C 0.71 14.07 8.49 -86.92 -0.74 13.33 16 15 O -0.59 -14.06 16.32 5.28 0.09 -13.98 16 16 N -0.74 -10.59 5.04 -57.14 -0.29 -10.87 16 17 C 0.13 1.69 3.48 -66.36 -0.23 1.46 16 18 H 0.10 1.51 7.55 -51.93 -0.39 1.12 16 19 C -0.16 -1.45 6.85 -25.16 -0.17 -1.62 16 20 C 0.04 0.39 7.63 37.93 0.29 0.68 16 21 O -0.37 -4.64 11.65 -35.23 -0.41 -5.05 16 22 C 0.03 0.42 7.35 37.93 0.28 0.70 16 23 C 0.12 2.95 5.24 -3.07 -0.02 2.94 16 24 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.38 9.71 7.45 45.56 0.34 10.05 16 26 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 29 H 0.06 0.72 7.28 -51.93 -0.38 0.35 16 30 H 0.39 4.57 6.85 -40.82 -0.28 4.29 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 38 H 0.06 1.68 7.91 -51.93 -0.41 1.27 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -30.26 310.95 -7.44 -37.70 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -4.84 Total: 13.36 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -1.21 Total: 10.15 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.27 Total: -47.29 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.78 Total: -33.93 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.26 -7.44 -37.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.332 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds