Wall clock time and date at job start Mon Mar 30 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99672 * 2 1 4 4 H 1.48500 * 109.47170 * 269.99921 * 3 2 1 5 5 H 1.48497 * 109.47372 * 29.99915 * 3 2 1 6 6 H 1.48498 * 109.46974 * 150.00301 * 3 2 1 7 7 C 1.37874 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00042 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.64084 * 298.31475 * 9 7 2 11 11 C 1.55157 * 110.87291 * 175.06924 * 9 7 2 12 12 C 1.55124 * 101.48746 * 205.90120 * 11 9 7 13 13 N 1.47424 * 104.72581 * 37.28923 * 12 11 9 14 14 C 1.34773 * 125.64847 * 155.81631 * 13 12 11 15 15 O 1.21593 * 119.99894 * 179.69706 * 14 13 12 16 16 N 1.34777 * 120.00097 * 359.42578 * 14 13 12 17 17 C 1.46504 * 119.99854 * 180.27545 * 16 14 13 18 18 H 1.08999 * 110.45620 * 32.39026 * 17 16 14 19 19 C 1.54510 * 110.50946 * 154.99963 * 17 16 14 20 20 C 1.54477 * 104.06352 * 118.64269 * 19 17 16 21 21 O 1.44430 * 104.80191 * 23.97550 * 20 19 17 22 22 C 1.44416 * 105.27522 * 319.48920 * 21 20 19 23 23 C 1.47023 * 108.69833 * 335.55877 * 13 12 11 24 24 H 0.96994 * 119.99928 * 359.97438 * 1 2 3 25 25 H 0.96696 * 114.00505 * 61.68688 * 10 9 7 26 26 H 1.09004 * 111.00311 * 324.13666 * 11 9 7 27 27 H 1.09001 * 111.00512 * 87.98687 * 11 9 7 28 28 H 1.09007 * 110.49220 * 278.45328 * 12 11 9 29 29 H 1.09004 * 110.34551 * 156.06055 * 12 11 9 30 30 H 0.97000 * 119.99736 * 0.26819 * 16 14 13 31 31 H 1.09001 * 110.50754 * 237.28812 * 19 17 16 32 32 H 1.08997 * 110.51445 * 359.85395 * 19 17 16 33 33 H 1.09004 * 110.36973 * 142.80589 * 20 19 17 34 34 H 1.08997 * 110.37319 * 265.03460 * 20 19 17 35 35 H 1.09000 * 110.37356 * 281.68169 * 22 21 20 36 36 H 1.09002 * 110.37089 * 159.34786 * 22 21 20 37 37 H 1.09003 * 109.88289 * 120.70155 * 23 13 12 38 38 H 1.09000 * 109.88003 * 241.85972 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4504 -2.6185 1.1770 11 6 2.2256 -3.7000 -0.1258 12 6 1.3107 -4.7743 -0.7702 13 7 0.4609 -4.0256 -1.7139 14 6 -0.1462 -4.5395 -2.8019 15 8 -0.8313 -3.8264 -3.5095 16 7 0.0105 -5.8425 -3.1087 17 6 -0.6446 -6.3997 -4.2947 18 1 -0.7136 -5.6475 -5.0806 19 6 0.1196 -7.6434 -4.8012 20 6 -0.9105 -8.7889 -4.6876 21 8 -2.1971 -8.1343 -4.7343 22 6 -2.0460 -6.9410 -3.9350 23 6 0.3804 -2.6269 -1.2681 24 1 -0.4850 0.8400 0.0004 25 1 -0.2276 -1.9344 1.2627 26 1 3.0651 -3.4556 -0.7767 27 1 2.5748 -4.0237 0.8547 28 1 0.6977 -5.2591 -0.0103 29 1 1.9102 -5.5125 -1.3030 30 1 0.5571 -6.4113 -2.5442 31 1 0.4263 -7.5070 -5.8383 32 1 0.9862 -7.8422 -4.1708 33 1 -0.8050 -9.4785 -5.5252 34 1 -0.7864 -9.3185 -3.7430 35 1 -2.0973 -7.1859 -2.8741 36 1 -2.8129 -6.2110 -4.1942 37 1 0.7613 -1.9669 -2.0475 38 1 -0.6532 -2.3710 -1.0353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591990470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:28 Heat of formation + Delta-G solvation = -142.373481 kcal Electronic energy + Delta-G solvation = -21471.630149 eV Core-core repulsion = 18120.182208 eV Total energy + Delta-G solvation = -3351.447941 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.50332 -40.23509 -38.97075 -36.08177 -35.64220 -34.22905 -32.23565 -31.27019 -29.76353 -29.24193 -26.87835 -24.51485 -23.78042 -22.21027 -21.43201 -21.16771 -19.25989 -18.90290 -17.80888 -17.23464 -17.15564 -16.77962 -16.28955 -16.21102 -16.02768 -15.25085 -14.91937 -14.77546 -14.64728 -14.14494 -13.89837 -13.51915 -13.36253 -13.17038 -12.85063 -12.75425 -12.52632 -12.33570 -12.28957 -12.26411 -12.10932 -11.95547 -11.33513 -11.16443 -10.87259 -10.65802 -10.30068 -10.25795 -9.43664 -8.26305 -6.42242 1.41016 1.43404 1.52807 1.58724 2.08166 2.37903 2.88980 3.00819 3.17720 3.51486 3.79644 3.81809 3.96177 4.06187 4.17712 4.21395 4.26846 4.39082 4.59149 4.67894 4.72308 4.77291 4.85745 4.87501 5.04959 5.05536 5.13394 5.23481 5.35539 5.38398 5.50081 5.74738 5.81076 6.02641 6.15365 6.64858 7.02480 7.27517 7.35043 7.52548 8.79776 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037729 B = 0.004244 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.965056 B = 6595.492105 C = 6805.937146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.586 6.586 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.635 5.635 14 C 0.710 3.290 15 O -0.643 6.643 16 N -0.717 5.717 17 C 0.127 3.873 18 H 0.079 0.921 19 C -0.150 4.150 20 C 0.040 3.960 21 O -0.393 6.393 22 C 0.037 3.963 23 C 0.142 3.858 24 H 0.269 0.731 25 H 0.375 0.625 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.412 0.588 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.028 0.972 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 -16.889 -5.301 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.086 0.914 9 C 0.192 3.808 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.371 5.371 14 C 0.412 3.588 15 O -0.525 6.525 16 N -0.376 5.376 17 C 0.021 3.979 18 H 0.097 0.903 19 C -0.188 4.188 20 C -0.036 4.036 21 O -0.312 6.312 22 C -0.042 4.042 23 C 0.018 3.982 24 H 0.079 0.921 25 H 0.224 0.776 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.250 0.750 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.916 -16.908 -5.886 18.139 hybrid contribution -0.096 1.883 0.236 1.900 sum 2.821 -15.024 -5.649 16.297 Atomic orbital electron populations 1.69810 1.07143 1.28439 1.50135 1.25814 0.95768 1.02826 0.93109 0.85483 0.78879 0.78793 0.78059 1.20538 1.20790 1.18810 1.21852 0.93978 0.91408 1.52391 0.91396 1.19728 0.87108 0.93588 0.80403 1.86091 1.51714 1.56231 1.45383 1.22757 0.96875 0.93664 1.01519 1.22477 0.92370 0.94816 0.91815 1.47909 1.51626 1.11914 1.25660 1.15772 0.79809 0.82853 0.80374 1.90862 1.46758 1.61078 1.53823 1.44947 1.55211 1.07401 1.30019 1.22199 0.92212 0.96538 0.86921 0.90297 1.23210 0.99379 0.92124 1.04114 1.23674 0.80990 0.95074 1.03878 1.89139 1.33574 1.37011 1.71427 1.23797 0.97451 0.87080 0.95852 1.22339 0.99075 0.79104 0.97672 0.92136 0.77636 0.89749 0.89087 0.90970 0.87686 0.75007 0.88427 0.87390 0.86764 0.90546 0.91427 0.90235 0.95318 0.95514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.20 10.96 21.45 0.24 -49.96 16 2 C 0.03 1.35 5.28 84.65 0.45 1.80 16 3 Si 0.96 42.06 29.54 68.60 2.03 44.09 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.56 -29.09 8.13 25.60 0.21 -28.88 16 8 H 0.07 3.43 7.78 -2.91 -0.02 3.40 16 9 C 0.23 11.08 0.85 -10.36 -0.01 11.07 16 10 O -0.59 -29.23 13.07 -148.98 -1.95 -31.18 16 11 C -0.11 -4.01 6.24 32.06 0.20 -3.81 16 12 C 0.11 3.26 6.58 86.93 0.57 3.83 16 13 N -0.63 -25.33 3.32 -829.32 -2.76 -28.09 16 14 C 0.71 27.76 8.49 179.06 1.52 29.28 16 15 O -0.64 -31.47 16.32 -4.01 -0.07 -31.54 16 16 N -0.72 -18.93 5.04 -452.95 -2.28 -21.21 16 17 C 0.13 3.04 3.48 46.01 0.16 3.20 16 18 H 0.08 2.32 7.55 -2.39 -0.02 2.30 16 19 C -0.15 -2.14 6.85 31.61 0.22 -1.92 16 20 C 0.04 0.56 7.63 72.48 0.55 1.12 16 21 O -0.39 -9.06 11.65 -148.98 -1.74 -10.80 16 22 C 0.04 0.91 7.35 72.48 0.53 1.44 16 23 C 0.14 7.07 5.24 86.73 0.45 7.53 16 24 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.37 19.67 7.45 -74.06 -0.55 19.11 16 26 H 0.08 2.93 8.05 -2.39 -0.02 2.91 16 27 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.11 2.20 7.28 -2.38 -0.02 2.18 16 30 H 0.41 7.88 6.85 -92.71 -0.64 7.24 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 1.06 7.70 -2.39 -0.02 1.05 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.61 8.06 -2.39 -0.02 1.59 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 37 H 0.03 1.59 7.81 -2.39 -0.02 1.57 16 38 H 0.03 1.49 7.91 -2.39 -0.02 1.47 16 Total: -1.00 -68.82 310.95 -1.78 -70.60 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.11 Total: 33.43 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 4.86 Total: 24.65 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -4.81 Total: -99.26 kcal Atomic # 8 Polarization: -69.76 SS G_CDS: -3.75 Total: -73.51 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -68.82 -1.78 -70.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591990470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.770 kcal (2) G-P(sol) polarization free energy of solvation -68.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds