Wall clock time and date at job start Mon Mar 30 2020 01:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 H 1.08997 * 109.47563 * 54.99885 * 3 2 1 5 5 C 1.50695 * 109.47448 * 175.00253 * 3 2 1 6 6 H 1.08004 * 120.00546 * 120.27461 * 5 3 2 7 7 C 1.37885 * 119.99721 * 299.99712 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47093 * 60.00328 * 9 7 5 11 11 H 1.48495 * 109.47002 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47239 * 300.00048 * 9 7 5 13 13 N 1.46506 * 109.47094 * 295.00136 * 3 2 1 14 14 C 1.34767 * 120.00042 * 84.99823 * 13 3 2 15 15 O 1.21284 * 120.00486 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99999 * 180.02562 * 14 13 3 17 17 H 1.08993 * 110.55087 * 55.69832 * 16 14 13 18 18 C 1.54996 * 110.61493 * 292.81854 * 16 14 13 19 19 C 1.54988 * 102.01161 * 204.59718 * 18 16 14 20 20 C 1.54101 * 104.25322 * 20.66725 * 19 18 16 21 21 H 1.08999 * 110.00473 * 242.67298 * 20 19 18 22 22 C 1.50699 * 109.87634 * 121.59076 * 20 19 18 23 23 N 1.34770 * 119.99836 * 65.71515 * 22 20 19 24 24 O 1.21280 * 119.99855 * 245.71733 * 22 20 19 25 25 O 1.43744 * 107.29291 * 2.16550 * 20 19 18 26 26 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47014 * 300.00240 * 1 2 3 28 28 H 1.08997 * 109.46959 * 60.00091 * 1 2 3 29 29 H 1.09001 * 109.47014 * 239.99760 * 2 1 3 30 30 H 1.09007 * 109.47025 * 119.99887 * 2 1 3 31 31 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00021 * 265.00203 * 13 3 2 33 33 H 1.08999 * 110.90883 * 322.67965 * 18 16 14 34 34 H 1.09007 * 110.90512 * 86.27789 * 18 16 14 35 35 H 1.09001 * 110.33676 * 262.03003 * 19 18 16 36 36 H 1.08999 * 110.68507 * 139.48109 * 19 18 16 37 37 H 0.96993 * 120.00525 * 0.02562 * 23 22 20 38 38 H 0.97002 * 119.99850 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6502 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3811 10 1 6.5005 2.2799 1.3807 11 1 6.3979 0.2157 2.6497 12 1 6.5967 0.1451 0.2343 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0363 3.3376 -2.6549 17 1 0.1342 2.6482 -3.4934 18 6 0.8888 4.6102 -2.8923 19 6 -0.0357 5.4514 -3.8087 20 6 -1.4420 4.8702 -3.5652 21 1 -1.8338 4.4429 -4.4882 22 6 -2.3653 5.9533 -3.0698 23 7 -2.6874 6.9847 -3.8753 24 8 -2.8185 5.8968 -1.9463 25 8 -1.3132 3.8435 -2.5674 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8294 -0.0618 2.9495 32 1 2.2719 2.1231 -1.9978 33 1 1.0816 5.1299 -1.9537 34 1 1.8225 4.3641 -3.3980 35 1 0.2523 5.3286 -4.8527 36 1 -0.0036 6.5037 -3.5262 37 1 -2.3253 7.0297 -4.7739 38 1 -3.2820 7.6816 -3.5565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599761329.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:42 Heat of formation + Delta-G solvation = -155.851915 kcal Electronic energy + Delta-G solvation = -21339.870778 eV Core-core repulsion = 17987.838369 eV Total energy + Delta-G solvation = -3352.032410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59991 -40.47196 -38.99648 -36.85275 -34.88026 -34.37602 -33.30173 -32.65331 -30.85671 -28.86567 -25.93605 -24.72195 -23.17665 -22.00278 -21.51228 -21.10204 -19.29466 -18.55284 -17.96617 -17.61781 -17.29673 -17.17261 -16.27898 -16.24018 -15.83504 -15.35013 -15.22453 -14.74748 -14.63170 -14.55692 -13.77267 -13.56656 -13.19759 -13.09014 -12.89520 -12.74397 -12.64429 -12.56215 -12.17318 -12.06479 -11.96279 -11.59474 -11.38650 -11.06017 -10.70905 -10.69732 -10.54085 -10.38822 -9.64466 -8.13929 -6.32203 1.46644 1.49091 1.53887 1.56786 1.78897 1.97774 2.40446 2.58354 3.13532 3.17406 3.46510 3.81314 3.85728 3.99158 4.07781 4.16983 4.43287 4.47331 4.55443 4.63829 4.75408 4.84410 4.96532 5.05054 5.08448 5.24267 5.43094 5.55487 5.62736 5.64306 5.79805 5.89113 5.96577 6.17120 6.47130 6.75864 6.99882 7.34461 7.35316 7.60767 8.91535 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031005 B = 0.004361 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.876788 B = 6418.626648 C = 6882.756296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.010 1.010 5 C -0.546 4.546 6 H 0.078 0.922 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.974 3.026 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.261 1.261 13 N -0.695 5.695 14 C 0.495 3.505 15 O -0.583 6.583 16 C 0.060 3.940 17 H 0.137 0.863 18 C -0.141 4.141 19 C -0.128 4.128 20 C 0.046 3.954 21 H 0.140 0.860 22 C 0.507 3.493 23 N -0.825 5.825 24 O -0.591 6.591 25 O -0.369 6.369 26 H 0.047 0.953 27 H 0.018 0.982 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.264 0.736 32 H 0.408 0.592 33 H 0.051 0.949 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.088 0.912 37 H 0.423 0.577 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 10.798 -21.551 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.008 0.992 5 C -0.584 4.584 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.798 3.202 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.185 1.185 13 N -0.346 5.346 14 C 0.281 3.719 15 O -0.463 6.463 16 C 0.000 4.000 17 H 0.154 0.846 18 C -0.179 4.179 19 C -0.166 4.166 20 C -0.015 4.015 21 H 0.157 0.843 22 C 0.291 3.709 23 N -0.391 5.391 24 O -0.470 6.470 25 O -0.287 6.287 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.243 0.757 33 H 0.070 0.930 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.107 0.893 37 H 0.255 0.745 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -4.185 10.409 -19.836 22.789 hybrid contribution 0.735 0.195 0.432 0.875 sum -3.450 10.604 -19.404 22.380 Atomic orbital electron populations 1.21687 0.97470 0.99082 0.99946 1.21786 0.93232 0.99242 1.01599 1.18371 0.93878 0.89066 0.81225 0.99216 1.21551 0.91050 1.38876 1.06968 0.90392 1.25836 1.03527 0.94386 0.94966 1.70068 1.37287 1.38363 1.09909 0.85379 0.78808 0.78457 0.77557 1.19603 1.21564 1.18509 1.46075 1.14925 1.55876 1.17753 1.20937 0.82201 0.78851 0.89862 1.90708 1.52753 1.60307 1.42536 1.23267 0.83317 0.98208 0.95225 0.84601 1.23197 1.00436 0.93346 1.00879 1.23041 0.89414 1.00516 1.03600 1.23121 0.97457 0.88008 0.92924 0.84298 1.21055 0.81049 0.83877 0.84887 1.43503 1.52008 1.25010 1.18624 1.90803 1.55449 1.78238 1.22554 1.89133 1.28942 1.52551 1.58030 0.93369 0.96295 0.93976 0.93354 0.90992 0.92675 0.75683 0.93046 0.85012 0.83803 0.89292 0.74450 0.75845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.52 71.98 0.61 -5.39 16 2 C -0.12 -6.05 5.45 30.59 0.17 -5.88 16 3 C 0.28 14.53 2.24 44.24 0.10 14.63 16 4 H -0.01 -0.64 7.58 -2.39 -0.02 -0.66 16 5 C -0.55 -28.64 8.73 25.60 0.22 -28.42 16 6 H 0.08 3.72 7.74 -2.91 -0.02 3.69 16 7 C 0.01 0.69 5.29 84.66 0.45 1.13 16 8 N -0.92 -53.37 11.29 21.45 0.24 -53.13 16 9 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 13 N -0.70 -28.48 5.02 -446.10 -2.24 -30.72 16 14 C 0.50 20.80 5.77 87.66 0.51 21.30 16 15 O -0.58 -31.78 13.71 15.19 0.21 -31.57 16 16 C 0.06 1.72 3.76 30.53 0.11 1.84 16 17 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 18 C -0.14 -2.86 6.59 31.96 0.21 -2.65 16 19 C -0.13 -1.58 6.62 31.65 0.21 -1.37 16 20 C 0.05 0.91 3.84 30.22 0.12 1.03 16 21 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 22 C 0.51 12.37 7.22 87.66 0.63 13.00 16 23 N -0.82 -9.22 8.86 -173.54 -1.54 -10.76 16 24 O -0.59 -23.49 17.36 15.68 0.27 -23.21 16 25 O -0.37 -12.65 10.02 -121.19 -1.21 -13.86 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.02 0.98 7.85 -2.39 -0.02 0.96 16 28 H 0.04 1.97 5.65 -2.39 -0.01 1.96 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 4.06 5.95 -2.38 -0.01 4.05 16 31 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.41 13.14 8.54 -92.71 -0.79 12.35 16 33 H 0.05 1.42 8.05 -2.39 -0.02 1.40 16 34 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.09 1.04 7.69 -2.39 -0.02 1.02 16 37 H 0.42 0.81 8.83 -92.71 -0.82 -0.01 16 38 H 0.41 4.17 8.93 -92.71 -0.83 3.34 16 Total: -1.00 -89.86 315.10 -0.23 -90.09 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -1.33 Total: 20.19 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 3.34 Total: 9.22 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -3.53 Total: -94.60 kcal Atomic # 8 Polarization: -67.91 SS G_CDS: -0.73 Total: -68.64 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -89.86 -0.23 -90.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599761329.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.758 kcal (2) G-P(sol) polarization free energy of solvation -89.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds