Wall clock time and date at job start Mon Mar 30 2020 02:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47162 * 2 1 4 4 C 1.52996 * 109.47154 * 239.99471 * 2 1 3 5 5 C 1.50699 * 109.47082 * 174.92314 * 4 2 1 6 6 H 1.08003 * 119.99841 * 4.99285 * 5 4 2 7 7 C 1.37876 * 120.00248 * 184.98616 * 5 4 2 8 8 N 1.31519 * 119.99516 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00415 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47163 * 90.00033 * 9 7 5 11 11 H 1.48497 * 109.47549 * 210.00232 * 9 7 5 12 12 H 1.48500 * 109.47014 * 330.00404 * 9 7 5 13 13 N 1.46902 * 109.46617 * 119.99464 * 2 1 3 14 14 C 1.46899 * 110.99878 * 63.56358 * 13 2 1 15 15 C 1.53241 * 109.33843 * 172.74266 * 14 13 2 16 16 N 1.47080 * 108.52117 * 53.83134 * 15 14 13 17 17 C 1.34770 * 120.88309 * 128.83799 * 16 15 14 18 18 O 1.21354 * 120.00298 * 6.28486 * 17 16 15 19 19 C 1.49435 * 120.00301 * 186.28884 * 17 16 15 20 20 O 1.21260 * 119.99943 * 6.20951 * 19 17 16 21 21 O 1.34537 * 120.00394 * 186.20900 * 19 17 16 22 22 C 1.47084 * 118.23622 * 308.81550 * 16 15 14 23 23 C 1.46898 * 111.00293 * 299.25883 * 13 2 1 24 24 H 1.08999 * 109.47253 * 300.00840 * 1 2 3 25 25 H 1.09003 * 109.46705 * 60.00428 * 1 2 3 26 26 H 1.08993 * 109.47510 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47031 * 294.92386 * 4 2 1 28 28 H 1.09003 * 109.47220 * 54.92306 * 4 2 1 29 29 H 0.97000 * 119.99812 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.49693 * 52.78715 * 14 13 2 31 31 H 1.08998 * 109.51767 * 292.71330 * 14 13 2 32 32 H 1.09000 * 109.63122 * 173.53740 * 15 14 13 33 33 H 1.09000 * 109.62995 * 294.11965 * 15 14 13 34 34 H 0.96706 * 117.00161 * 179.97438 * 21 19 17 35 35 H 1.09002 * 109.62239 * 291.47231 * 22 16 15 36 36 H 1.09001 * 109.62780 * 170.89425 * 22 16 15 37 37 H 1.08997 * 109.49712 * 307.21931 * 23 13 2 38 38 H 1.09003 * 109.49005 * 67.29758 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5418 -0.6134 -1.3136 6 1 4.0855 -0.1541 -0.5013 7 6 4.2216 -1.1010 -2.4095 8 7 3.5594 -1.6599 -3.3989 9 14 6.0831 -0.9678 -2.4892 10 1 6.6924 -2.1792 -1.8837 11 1 6.5111 -0.8542 -3.9065 12 1 6.5257 0.2358 -1.7404 13 7 2.0196 -0.6924 1.1996 14 6 1.6193 -2.1058 1.1917 15 6 2.2973 -2.8317 2.3586 16 7 1.9922 -2.1058 3.6009 17 6 1.5003 -2.7518 4.6766 18 8 1.4104 -3.9620 4.6690 19 6 1.0656 -1.9779 5.8788 20 8 1.0490 -0.7659 5.8462 21 8 0.6925 -2.6259 6.9972 22 6 2.2386 -0.6562 3.6383 23 6 1.5631 -0.0161 2.4210 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.7528 -1.7719 -1.2047 28 1 1.6043 -0.2628 -2.1369 29 1 4.0376 -2.0026 -4.1701 30 1 1.9242 -2.5650 0.2514 31 1 0.5370 -2.1784 1.2978 32 1 1.9163 -3.8506 2.4271 33 1 3.3757 -2.8508 2.2011 34 1 0.4196 -2.0825 7.7492 35 1 3.3114 -0.4663 3.6039 36 1 1.8189 -0.2370 4.5527 37 1 1.8270 1.0403 2.3722 38 1 0.4814 -0.1173 2.5102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695715424.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:45 Heat of formation + Delta-G solvation = -88.292148 kcal Electronic energy + Delta-G solvation = -21635.294594 eV Core-core repulsion = 18286.191796 eV Total energy + Delta-G solvation = -3349.102799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29069 -39.48532 -38.26039 -36.92737 -35.26419 -32.76924 -31.04775 -30.81968 -27.44179 -27.22331 -25.29297 -23.72992 -22.98702 -21.62789 -20.28903 -18.69639 -18.65394 -17.46687 -16.71001 -16.39029 -16.17470 -15.30319 -15.14280 -14.70163 -14.67809 -14.22077 -14.05142 -13.83057 -13.30964 -12.93259 -12.53645 -12.11516 -12.08515 -11.91066 -11.80210 -11.61022 -11.24339 -10.97724 -10.82875 -10.71857 -10.62166 -10.41361 -9.93436 -9.67359 -9.19093 -9.03669 -8.81957 -8.30511 -7.60235 -5.93967 -3.92759 0.87043 1.83961 2.79580 3.36480 3.43110 3.44601 3.46815 4.38303 4.47895 4.52950 5.05488 5.21507 5.35250 5.43039 5.44836 5.55259 5.58352 5.73900 5.76651 5.90293 5.96426 6.04136 6.19216 6.23060 6.31391 6.38641 6.53526 6.67249 6.87953 7.01169 7.26879 7.45147 7.59502 7.70041 7.79739 7.91316 8.07086 8.51504 9.14635 9.70140 11.17744 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.004802 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.001544 B = 5829.641917 C = 6183.887741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.074 0.926 4 C 0.026 3.974 5 C -0.495 4.495 6 H 0.063 0.937 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.513 5.513 14 C 0.040 3.960 15 C 0.116 3.884 16 N -0.568 5.568 17 C 0.525 3.475 18 O -0.501 6.501 19 C 0.484 3.516 20 O -0.481 6.481 21 O -0.484 6.484 22 C 0.053 3.947 23 C 0.042 3.958 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.017 0.983 28 H 0.023 0.977 29 H 0.258 0.742 30 H 0.113 0.887 31 H 0.029 0.971 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.417 0.583 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 1.316 16.937 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.092 0.908 4 C -0.011 4.011 5 C -0.534 4.534 6 H 0.081 0.919 7 C -0.148 4.148 8 N -0.543 5.543 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.237 5.237 14 C -0.088 4.088 15 C -0.005 4.005 16 N -0.303 5.303 17 C 0.306 3.694 18 O -0.377 6.377 19 C 0.323 3.677 20 O -0.369 6.369 21 O -0.294 6.294 22 C -0.068 4.068 23 C -0.087 4.087 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.131 0.869 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.277 0.723 35 H 0.096 0.904 36 H 0.162 0.838 37 H 0.102 0.898 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.351 0.691 16.424 17.287 hybrid contribution -0.019 0.503 0.265 0.569 sum -5.369 1.194 16.688 17.572 Atomic orbital electron populations 1.22527 0.99722 1.01225 1.00855 1.21944 0.90059 0.98672 0.91408 0.90819 1.19286 0.96562 0.95112 0.90126 1.21188 0.91697 1.37374 1.03122 0.91916 1.25015 0.98040 0.95831 0.95890 1.69962 1.35285 1.40771 1.08291 0.86625 0.86318 0.78360 0.76826 1.20893 1.21621 1.20006 1.62112 1.59156 1.01205 1.01228 1.22556 0.96644 0.90343 0.99304 1.22093 1.01998 0.95927 0.80507 1.48135 1.59662 1.10685 1.11831 1.18648 0.80872 0.87014 0.82828 1.90814 1.53462 1.12782 1.80602 1.23557 0.73753 0.86010 0.84424 1.90492 1.49016 1.15569 1.81866 1.84658 1.76805 1.44611 1.23297 1.23379 1.02538 0.77863 1.02988 1.22415 0.96970 0.98980 0.90379 0.94005 0.92397 0.93147 0.96465 0.95827 0.93240 0.86910 0.95302 0.88815 0.89313 0.72300 0.90362 0.83776 0.89800 0.95019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.52 37.16 0.32 -2.73 16 2 C 0.09 1.67 2.34 -67.71 -0.16 1.51 16 3 H 0.07 1.45 8.13 -51.93 -0.42 1.03 16 4 C 0.03 0.63 4.16 -27.89 -0.12 0.51 16 5 C -0.50 -13.25 8.84 -34.44 -0.30 -13.56 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.51 -9.04 4.36 -226.35 -0.99 -10.03 16 14 C 0.04 0.68 4.82 -3.70 -0.02 0.66 16 15 C 0.12 1.75 6.58 -3.60 -0.02 1.73 16 16 N -0.57 -8.04 3.01 -172.97 -0.52 -8.56 16 17 C 0.53 7.38 7.76 -11.60 -0.09 7.29 16 18 O -0.50 -8.35 16.46 -7.57 -0.12 -8.47 16 19 C 0.48 5.45 8.30 35.40 0.29 5.75 16 20 O -0.48 -5.62 13.89 -19.08 -0.27 -5.88 16 21 O -0.48 -4.18 13.30 -45.05 -0.60 -4.78 16 22 C 0.05 0.70 6.46 -3.60 -0.02 0.68 16 23 C 0.04 0.60 5.02 -3.70 -0.02 0.58 16 24 H 0.04 0.62 6.59 -51.93 -0.34 0.27 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.84 6.65 -51.93 -0.35 0.49 16 27 H 0.02 0.43 5.92 -51.93 -0.31 0.13 16 28 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.11 2.19 5.75 -51.93 -0.30 1.89 16 31 H 0.03 0.48 6.78 -51.93 -0.35 0.12 16 32 H 0.09 1.38 7.11 -51.93 -0.37 1.01 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.42 1.18 9.11 45.56 0.41 1.60 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.15 1.78 3.80 -56.66 -0.22 1.57 16 37 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 38 H 0.03 0.46 6.73 -51.93 -0.35 0.11 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -31.68 306.68 -6.64 -38.31 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.24 Total: 0.26 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.24 Total: 3.77 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.77 Total: -44.30 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.99 Total: -19.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.68 -6.64 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695715424.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.979 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds