Wall clock time and date at job start Mon Mar 30 2020 02:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47162 * 2 1 4 4 C 1.52996 * 109.47154 * 239.99471 * 2 1 3 5 5 C 1.50699 * 109.47082 * 174.92314 * 4 2 1 6 6 H 1.08003 * 119.99841 * 4.99285 * 5 4 2 7 7 C 1.37876 * 120.00248 * 184.98616 * 5 4 2 8 8 N 1.31519 * 119.99516 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00415 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47163 * 90.00033 * 9 7 5 11 11 H 1.48497 * 109.47549 * 210.00232 * 9 7 5 12 12 H 1.48500 * 109.47014 * 330.00404 * 9 7 5 13 13 N 1.46902 * 109.46617 * 119.99464 * 2 1 3 14 14 C 1.46899 * 110.99878 * 63.56358 * 13 2 1 15 15 C 1.53241 * 109.33843 * 172.74266 * 14 13 2 16 16 N 1.47080 * 108.52117 * 53.83134 * 15 14 13 17 17 C 1.34770 * 120.88309 * 128.83799 * 16 15 14 18 18 O 1.21354 * 120.00298 * 6.28486 * 17 16 15 19 19 C 1.49435 * 120.00301 * 186.28884 * 17 16 15 20 20 O 1.21260 * 119.99943 * 6.20951 * 19 17 16 21 21 O 1.34537 * 120.00394 * 186.20900 * 19 17 16 22 22 C 1.47084 * 118.23622 * 308.81550 * 16 15 14 23 23 C 1.46898 * 111.00293 * 299.25883 * 13 2 1 24 24 H 1.08999 * 109.47253 * 300.00840 * 1 2 3 25 25 H 1.09003 * 109.46705 * 60.00428 * 1 2 3 26 26 H 1.08993 * 109.47510 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47031 * 294.92386 * 4 2 1 28 28 H 1.09003 * 109.47220 * 54.92306 * 4 2 1 29 29 H 0.97000 * 119.99812 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.49693 * 52.78715 * 14 13 2 31 31 H 1.08998 * 109.51767 * 292.71330 * 14 13 2 32 32 H 1.09000 * 109.63122 * 173.53740 * 15 14 13 33 33 H 1.09000 * 109.62995 * 294.11965 * 15 14 13 34 34 H 0.96706 * 117.00161 * 179.97438 * 21 19 17 35 35 H 1.09002 * 109.62239 * 291.47231 * 22 16 15 36 36 H 1.09001 * 109.62780 * 170.89425 * 22 16 15 37 37 H 1.08997 * 109.49712 * 307.21931 * 23 13 2 38 38 H 1.09003 * 109.49005 * 67.29758 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5418 -0.6134 -1.3136 6 1 4.0855 -0.1541 -0.5013 7 6 4.2216 -1.1010 -2.4095 8 7 3.5594 -1.6599 -3.3989 9 14 6.0831 -0.9678 -2.4892 10 1 6.6924 -2.1792 -1.8837 11 1 6.5111 -0.8542 -3.9065 12 1 6.5257 0.2358 -1.7404 13 7 2.0196 -0.6924 1.1996 14 6 1.6193 -2.1058 1.1917 15 6 2.2973 -2.8317 2.3586 16 7 1.9922 -2.1058 3.6009 17 6 1.5003 -2.7518 4.6766 18 8 1.4104 -3.9620 4.6690 19 6 1.0656 -1.9779 5.8788 20 8 1.0490 -0.7659 5.8462 21 8 0.6925 -2.6259 6.9972 22 6 2.2386 -0.6562 3.6383 23 6 1.5631 -0.0161 2.4210 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.7528 -1.7719 -1.2047 28 1 1.6043 -0.2628 -2.1369 29 1 4.0376 -2.0026 -4.1701 30 1 1.9242 -2.5650 0.2514 31 1 0.5370 -2.1784 1.2978 32 1 1.9163 -3.8506 2.4271 33 1 3.3757 -2.8508 2.2011 34 1 0.4196 -2.0825 7.7492 35 1 3.3114 -0.4663 3.6039 36 1 1.8189 -0.2370 4.5527 37 1 1.8270 1.0403 2.3722 38 1 0.4814 -0.1173 2.5102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695715424.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:44 Heat of formation + Delta-G solvation = -111.582970 kcal Electronic energy + Delta-G solvation = -21636.304560 eV Core-core repulsion = 18286.191796 eV Total energy + Delta-G solvation = -3350.112764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.26994 -40.57299 -39.52419 -37.81747 -36.52685 -34.72947 -32.36118 -32.25717 -29.25170 -28.39341 -26.42074 -25.31320 -24.48601 -22.84945 -21.54508 -20.01583 -19.51939 -18.53885 -18.31982 -17.78226 -17.36241 -16.68973 -16.53191 -16.24324 -15.77354 -15.64009 -15.32437 -14.79793 -14.76207 -14.24849 -14.01038 -13.64096 -13.47440 -13.18150 -13.14341 -12.87478 -12.79633 -12.63678 -12.37295 -12.17050 -12.03207 -11.96960 -11.66340 -11.14508 -11.06560 -10.55309 -10.44091 -10.01658 -8.97587 -8.07845 -6.12519 -0.08776 0.90002 1.44801 1.45530 1.55878 1.78776 2.42088 2.49586 3.07319 3.28815 3.64689 3.88839 4.00449 4.12716 4.22419 4.30996 4.40396 4.45929 4.55547 4.57086 4.63984 4.81415 4.91194 5.01015 5.01848 5.17051 5.20129 5.25606 5.52037 5.52868 5.72038 5.92636 5.95640 6.29326 6.36646 6.43513 6.50410 6.76949 7.02617 7.54166 9.04010 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.004802 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.001544 B = 5829.641917 C = 6183.887741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 H 0.071 0.929 4 C 0.031 3.969 5 C -0.498 4.498 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.528 5.528 14 C 0.048 3.952 15 C 0.123 3.877 16 N -0.570 5.570 17 C 0.522 3.478 18 O -0.532 6.532 19 C 0.499 3.501 20 O -0.483 6.483 21 O -0.479 6.479 22 C 0.060 3.940 23 C 0.043 3.957 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.001 0.999 28 H -0.006 1.006 29 H 0.258 0.742 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.444 0.556 35 H 0.079 0.921 36 H 0.162 0.838 37 H 0.097 0.903 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 2.276 19.283 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 H 0.089 0.911 4 C -0.006 4.006 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.582 5.582 9 Si 0.780 3.220 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.252 5.252 14 C -0.080 4.080 15 C 0.001 3.999 16 N -0.304 5.304 17 C 0.305 3.695 18 O -0.410 6.410 19 C 0.338 3.662 20 O -0.372 6.372 21 O -0.292 6.292 22 C -0.060 4.060 23 C -0.085 4.085 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.019 0.981 28 H 0.012 0.988 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.309 0.691 35 H 0.097 0.903 36 H 0.178 0.822 37 H 0.115 0.885 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.313 1.680 18.823 19.631 hybrid contribution -0.079 0.186 -0.397 0.445 sum -5.392 1.866 18.426 19.290 Atomic orbital electron populations 1.22393 0.97491 1.01328 1.02086 1.21639 0.91784 0.97682 0.90134 0.91057 1.19147 0.95355 0.94481 0.91586 1.21504 0.93129 1.36327 1.02723 0.91992 1.25811 1.02516 0.95768 0.95744 1.70091 1.37006 1.42139 1.08973 0.85614 0.81020 0.78615 0.76733 1.20449 1.21608 1.19020 1.62027 1.59894 1.01478 1.01840 1.22370 0.96950 0.90146 0.98574 1.21875 1.01379 0.95957 0.80699 1.48155 1.59633 1.11055 1.11593 1.19075 0.80004 0.86858 0.83547 1.90800 1.54544 1.14211 1.81399 1.22662 0.73884 0.85352 0.84317 1.90474 1.49441 1.15392 1.81937 1.84593 1.76149 1.45064 1.23415 1.23455 1.02626 0.77058 1.02909 1.22501 0.97403 0.99493 0.89126 0.91457 0.92429 0.93595 0.98121 0.98797 0.93353 0.90106 0.94845 0.88630 0.89915 0.69072 0.90253 0.82222 0.88494 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 8.52 71.98 0.61 -4.96 16 2 C 0.10 3.65 2.34 44.91 0.11 3.75 16 3 H 0.07 2.75 8.13 -2.39 -0.02 2.73 16 4 C 0.03 1.55 4.16 29.85 0.12 1.68 16 5 C -0.50 -27.05 8.84 25.60 0.23 -26.82 16 6 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 8 N -0.94 -56.40 13.29 21.45 0.28 -56.11 16 9 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.53 -18.20 4.36 -870.04 -3.79 -21.99 16 14 C 0.05 1.64 4.82 86.38 0.42 2.06 16 15 C 0.12 3.68 6.58 86.35 0.57 4.25 16 16 N -0.57 -15.26 3.01 -819.53 -2.47 -17.73 16 17 C 0.52 13.78 7.76 87.26 0.68 14.45 16 18 O -0.53 -17.17 16.46 9.23 0.15 -17.02 16 19 C 0.50 9.82 8.30 70.84 0.59 10.41 16 20 O -0.48 -9.64 13.89 20.61 0.29 -9.36 16 21 O -0.48 -6.71 13.30 -49.68 -0.66 -7.37 16 22 C 0.06 1.43 6.46 86.35 0.56 1.99 16 23 C 0.04 1.15 5.02 86.38 0.43 1.58 16 24 H 0.07 1.81 6.59 -2.39 -0.02 1.80 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.04 1.50 6.65 -2.39 -0.02 1.48 16 27 H 0.00 0.04 5.92 -2.38 -0.01 0.02 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.08 3.27 5.75 -2.39 -0.01 3.26 16 31 H 0.03 1.09 6.78 -2.39 -0.02 1.08 16 32 H 0.10 2.83 7.11 -2.39 -0.02 2.81 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.44 0.78 9.11 -74.05 -0.67 0.11 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.16 3.43 3.80 -77.39 -0.29 3.14 16 37 H 0.10 2.36 8.10 -2.39 -0.02 2.34 16 38 H 0.04 0.97 6.73 -2.39 -0.02 0.96 16 Total: -1.00 -68.15 306.68 0.73 -67.42 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.13 Total: 7.03 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 4.77 Total: 8.73 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -5.97 Total: -95.83 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.22 Total: -33.75 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.15 0.73 -67.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695715424.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.166 kcal (2) G-P(sol) polarization free energy of solvation -68.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds