Wall clock time and date at job start Mon Mar 30 2020 02:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46741 * 2 1 4 4 C 1.53004 * 109.47133 * 119.99497 * 2 1 3 5 5 C 1.50703 * 109.47089 * 63.21473 * 4 2 1 6 6 H 1.08004 * 119.99699 * 4.89638 * 5 4 2 7 7 C 1.37876 * 120.00180 * 184.89454 * 5 4 2 8 8 N 1.31517 * 119.99525 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00241 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47710 * 89.99645 * 9 7 5 11 11 H 1.48500 * 109.47299 * 210.00176 * 9 7 5 12 12 H 1.48506 * 109.47056 * 329.99581 * 9 7 5 13 13 N 1.46896 * 109.47132 * 239.99509 * 2 1 3 14 14 C 1.46900 * 110.99763 * 65.96109 * 13 2 1 15 15 C 1.53243 * 109.33786 * 187.25222 * 14 13 2 16 16 N 1.47077 * 108.52051 * 306.16643 * 15 14 13 17 17 C 1.34778 * 120.88323 * 231.19016 * 16 15 14 18 18 O 1.21344 * 120.00232 * 182.27594 * 17 16 15 19 19 C 1.49440 * 119.99961 * 2.27660 * 17 16 15 20 20 O 1.21254 * 119.99686 * 354.01143 * 19 17 16 21 21 O 1.34530 * 120.00283 * 174.28434 * 19 17 16 22 22 C 1.47080 * 118.23950 * 51.45622 * 16 15 14 23 23 C 1.46902 * 110.99914 * 190.25496 * 13 2 1 24 24 H 1.09004 * 109.47540 * 300.00003 * 1 2 3 25 25 H 1.08992 * 109.47422 * 60.00817 * 1 2 3 26 26 H 1.09008 * 109.46637 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47223 * 183.21649 * 4 2 1 28 28 H 1.08999 * 109.47386 * 303.21932 * 4 2 1 29 29 H 0.97010 * 119.99221 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.49621 * 67.29294 * 14 13 2 31 31 H 1.09001 * 109.51426 * 307.21963 * 14 13 2 32 32 H 1.09000 * 109.62847 * 186.45737 * 15 14 13 33 33 H 1.08998 * 109.63040 * 65.87709 * 15 14 13 34 34 H 0.96695 * 117.00546 * 179.72143 * 21 19 17 35 35 H 1.09003 * 109.62772 * 68.25651 * 22 16 15 36 36 H 1.09003 * 109.63125 * 188.83426 * 22 16 15 37 37 H 1.08999 * 109.49346 * 292.71277 * 23 13 2 38 38 H 1.09007 * 109.49120 * 52.76178 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6038 -2.1631 1.2103 6 1 1.0898 -2.5485 0.3420 7 6 1.8608 -2.9905 2.2828 8 7 2.4872 -2.5213 3.3398 9 14 1.3208 -4.7780 2.2341 10 1 2.4064 -5.6075 1.6522 11 1 1.0267 -5.2440 3.6131 12 1 0.0997 -4.9036 1.3983 13 7 2.0197 -0.6926 -1.1993 14 6 1.6684 0.0508 -2.4167 15 6 2.0337 -0.7876 -3.6464 16 7 3.4479 -1.1779 -3.5423 17 6 4.3010 -0.9659 -4.5640 18 8 5.4548 -1.3316 -4.4769 19 6 3.8261 -0.2805 -5.8041 20 8 2.6510 -0.0125 -5.9364 21 8 4.7014 0.0343 -6.7760 22 6 3.9052 -1.8112 -2.2961 23 6 3.4675 -0.9273 -1.1175 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1284 -0.6715 1.2786 28 1 1.6304 -0.2417 2.1384 29 1 2.6684 -3.1036 4.0943 30 1 2.2195 0.9908 -2.4407 31 1 0.5980 0.2564 -2.4217 32 1 1.8823 -0.1973 -4.5501 33 1 1.4090 -1.6802 -3.6797 34 1 4.3466 0.4732 -7.5611 35 1 3.4570 -2.8004 -2.2022 36 1 4.9917 -1.8980 -2.3067 37 1 3.9935 0.0265 -1.1595 38 1 3.7019 -1.4309 -0.1796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695715426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:48 Heat of formation + Delta-G solvation = -87.436006 kcal Electronic energy + Delta-G solvation = -21680.767406 eV Core-core repulsion = 18331.701732 eV Total energy + Delta-G solvation = -3349.065673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26619 -39.41839 -38.14681 -36.89785 -35.25195 -32.75930 -31.14839 -30.84119 -27.36089 -27.09691 -25.12497 -23.85216 -22.74702 -21.58763 -20.01258 -19.01337 -18.67322 -17.49379 -16.76841 -16.52063 -16.12384 -15.02049 -14.84046 -14.72580 -14.55894 -14.43636 -14.02361 -13.71888 -13.48496 -12.83048 -12.48845 -12.18255 -12.06817 -11.79785 -11.49897 -11.26031 -11.10027 -10.96105 -10.88991 -10.78514 -10.60472 -10.33974 -9.92130 -9.63221 -9.16715 -9.02608 -8.79108 -8.31515 -7.60312 -5.94785 -3.93406 0.89848 1.85865 2.82100 3.35534 3.42715 3.46112 3.46949 4.39370 4.48086 4.52948 5.08581 5.22854 5.37253 5.42013 5.47912 5.57941 5.63019 5.79275 5.91758 6.02405 6.10323 6.21722 6.22211 6.27666 6.38929 6.50874 6.66173 6.84825 7.03415 7.11316 7.29149 7.46896 7.59237 7.72901 7.78126 7.89146 8.07125 8.51202 9.15395 9.69669 11.16987 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026498 B = 0.004997 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.428481 B = 5601.770228 C = 6048.631729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.088 3.912 3 H 0.012 0.988 4 C 0.021 3.979 5 C -0.491 4.491 6 H 0.068 0.932 7 C 0.051 3.949 8 N -0.902 5.902 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.514 5.514 14 C 0.037 3.963 15 C 0.056 3.944 16 N -0.568 5.568 17 C 0.524 3.476 18 O -0.502 6.502 19 C 0.484 3.516 20 O -0.482 6.482 21 O -0.484 6.484 22 C 0.116 3.884 23 C 0.043 3.957 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.014 0.986 28 H 0.024 0.976 29 H 0.258 0.742 30 H 0.025 0.975 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.080 0.920 34 H 0.417 0.583 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.024 0.976 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 5.897 -16.453 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.019 4.019 3 H 0.030 0.970 4 C -0.016 4.016 5 C -0.530 4.530 6 H 0.086 0.914 7 C -0.148 4.148 8 N -0.543 5.543 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.240 5.240 14 C -0.092 4.092 15 C -0.065 4.065 16 N -0.303 5.303 17 C 0.305 3.695 18 O -0.378 6.378 19 C 0.323 3.677 20 O -0.370 6.370 21 O -0.294 6.294 22 C -0.005 4.005 23 C -0.085 4.085 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.098 0.902 34 H 0.277 0.723 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.042 0.958 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.589 5.077 -15.944 16.744 hybrid contribution -0.224 0.093 -0.313 0.396 sum 0.365 5.170 -16.258 17.064 Atomic orbital electron populations 1.21736 0.95162 1.02817 0.98996 1.21761 0.95276 0.93430 0.91423 0.97034 1.19324 0.95893 0.95955 0.90395 1.21180 1.36116 0.94210 1.01469 0.91366 1.25036 0.95744 0.98347 0.95714 1.69970 1.42370 1.35663 1.06270 0.86650 0.78997 0.85743 0.76896 1.20921 1.21675 1.19975 1.61906 1.13002 1.47649 1.01397 1.22521 1.01475 0.94416 0.90755 1.23365 0.79174 1.01762 1.02168 1.48190 1.10695 1.57178 1.14213 1.18650 0.86042 0.81806 0.82963 1.90811 1.17199 1.50092 1.79670 1.23551 0.83532 0.75828 0.84827 1.90499 1.18175 1.50590 1.77786 1.84653 1.42828 1.72099 1.29783 1.22205 1.00864 0.97169 0.80287 1.22643 0.88265 0.98009 0.99580 0.93160 0.95007 0.90813 0.96789 0.95752 0.93259 0.95665 0.89407 0.83876 0.90172 0.72327 0.89300 0.88749 0.95814 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.92 37.16 0.33 -1.99 16 2 C 0.09 1.72 2.36 -67.71 -0.16 1.56 16 3 H 0.01 0.22 8.12 -51.93 -0.42 -0.20 16 4 C 0.02 0.51 4.17 -27.88 -0.12 0.39 16 5 C -0.49 -12.74 7.33 -34.44 -0.25 -13.00 16 6 H 0.07 1.77 6.87 -52.48 -0.36 1.41 16 7 C 0.05 1.40 5.46 -17.82 -0.10 1.31 16 8 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.51 -9.17 3.83 -226.04 -0.87 -10.03 16 14 C 0.04 0.55 5.46 -3.70 -0.02 0.53 16 15 C 0.06 0.75 6.38 -3.60 -0.02 0.73 16 16 N -0.57 -8.21 3.00 -172.69 -0.52 -8.73 16 17 C 0.52 7.52 7.77 -11.59 -0.09 7.43 16 18 O -0.50 -8.54 16.43 -7.58 -0.12 -8.66 16 19 C 0.48 5.55 8.32 35.40 0.29 5.85 16 20 O -0.48 -5.69 13.81 -19.08 -0.26 -5.95 16 21 O -0.48 -4.28 13.30 -45.04 -0.60 -4.88 16 22 C 0.12 1.80 6.62 -3.37 -0.02 1.78 16 23 C 0.04 0.76 5.08 -3.46 -0.02 0.75 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.03 0.48 6.41 -51.93 -0.33 0.15 16 26 H 0.07 1.45 6.93 -51.92 -0.36 1.09 16 27 H 0.01 0.35 6.36 -51.93 -0.33 0.02 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 1.20 6.17 -51.93 -0.32 0.88 16 32 H 0.14 1.79 3.88 -56.66 -0.22 1.57 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.42 1.25 9.11 45.56 0.41 1.67 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 1.44 7.07 -51.93 -0.37 1.08 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.12 2.46 5.44 -51.92 -0.28 2.17 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -31.11 305.91 -6.47 -37.58 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.25 Total: -0.06 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -0.17 Total: 5.34 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.65 Total: -44.19 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.99 Total: -19.49 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.11 -6.47 -37.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695715426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.859 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds