Wall clock time and date at job start Mon Mar 30 2020 02:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46741 * 2 1 4 4 C 1.53004 * 109.47133 * 119.99497 * 2 1 3 5 5 C 1.50703 * 109.47089 * 63.21473 * 4 2 1 6 6 H 1.08004 * 119.99699 * 4.89638 * 5 4 2 7 7 C 1.37876 * 120.00180 * 184.89454 * 5 4 2 8 8 N 1.31517 * 119.99525 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00241 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47710 * 89.99645 * 9 7 5 11 11 H 1.48500 * 109.47299 * 210.00176 * 9 7 5 12 12 H 1.48506 * 109.47056 * 329.99581 * 9 7 5 13 13 N 1.46896 * 109.47132 * 239.99509 * 2 1 3 14 14 C 1.46900 * 110.99763 * 65.96109 * 13 2 1 15 15 C 1.53243 * 109.33786 * 187.25222 * 14 13 2 16 16 N 1.47077 * 108.52051 * 306.16643 * 15 14 13 17 17 C 1.34778 * 120.88323 * 231.19016 * 16 15 14 18 18 O 1.21344 * 120.00232 * 182.27594 * 17 16 15 19 19 C 1.49440 * 119.99961 * 2.27660 * 17 16 15 20 20 O 1.21254 * 119.99686 * 354.01143 * 19 17 16 21 21 O 1.34530 * 120.00283 * 174.28434 * 19 17 16 22 22 C 1.47080 * 118.23950 * 51.45622 * 16 15 14 23 23 C 1.46902 * 110.99914 * 190.25496 * 13 2 1 24 24 H 1.09004 * 109.47540 * 300.00003 * 1 2 3 25 25 H 1.08992 * 109.47422 * 60.00817 * 1 2 3 26 26 H 1.09008 * 109.46637 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47223 * 183.21649 * 4 2 1 28 28 H 1.08999 * 109.47386 * 303.21932 * 4 2 1 29 29 H 0.97010 * 119.99221 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.49621 * 67.29294 * 14 13 2 31 31 H 1.09001 * 109.51426 * 307.21963 * 14 13 2 32 32 H 1.09000 * 109.62847 * 186.45737 * 15 14 13 33 33 H 1.08998 * 109.63040 * 65.87709 * 15 14 13 34 34 H 0.96695 * 117.00546 * 179.72143 * 21 19 17 35 35 H 1.09003 * 109.62772 * 68.25651 * 22 16 15 36 36 H 1.09003 * 109.63125 * 188.83426 * 22 16 15 37 37 H 1.08999 * 109.49346 * 292.71277 * 23 13 2 38 38 H 1.09007 * 109.49120 * 52.76178 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6038 -2.1631 1.2103 6 1 1.0898 -2.5485 0.3420 7 6 1.8608 -2.9905 2.2828 8 7 2.4872 -2.5213 3.3398 9 14 1.3208 -4.7780 2.2341 10 1 2.4064 -5.6075 1.6522 11 1 1.0267 -5.2440 3.6131 12 1 0.0997 -4.9036 1.3983 13 7 2.0197 -0.6926 -1.1993 14 6 1.6684 0.0508 -2.4167 15 6 2.0337 -0.7876 -3.6464 16 7 3.4479 -1.1779 -3.5423 17 6 4.3010 -0.9659 -4.5640 18 8 5.4548 -1.3316 -4.4769 19 6 3.8261 -0.2805 -5.8041 20 8 2.6510 -0.0125 -5.9364 21 8 4.7014 0.0343 -6.7760 22 6 3.9052 -1.8112 -2.2961 23 6 3.4675 -0.9273 -1.1175 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1284 -0.6715 1.2786 28 1 1.6304 -0.2417 2.1384 29 1 2.6684 -3.1036 4.0943 30 1 2.2195 0.9908 -2.4407 31 1 0.5980 0.2564 -2.4217 32 1 1.8823 -0.1973 -4.5501 33 1 1.4090 -1.6802 -3.6797 34 1 4.3466 0.4732 -7.5611 35 1 3.4570 -2.8004 -2.2022 36 1 4.9917 -1.8980 -2.3067 37 1 3.9935 0.0265 -1.1595 38 1 3.7019 -1.4309 -0.1796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695715426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:47 Heat of formation + Delta-G solvation = -109.893532 kcal Electronic energy + Delta-G solvation = -21681.741237 eV Core-core repulsion = 18331.701732 eV Total energy + Delta-G solvation = -3350.039505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26135 -40.51702 -39.45082 -37.81400 -36.56332 -34.65314 -32.56510 -32.27865 -28.90070 -28.53880 -26.26099 -25.59531 -24.16106 -22.74809 -21.30212 -20.51389 -19.51813 -18.70421 -18.19638 -17.69986 -17.51435 -16.53533 -16.30400 -16.01106 -15.86619 -15.77634 -15.34798 -14.95819 -14.75286 -14.20635 -13.99288 -13.77120 -13.23706 -13.01088 -12.85245 -12.80507 -12.74958 -12.65584 -12.40278 -12.17333 -12.04969 -12.00745 -11.68477 -11.07814 -10.98082 -10.54854 -10.42604 -10.01470 -9.03096 -8.05881 -6.09288 -0.07838 0.89715 1.45378 1.46824 1.56488 1.78992 2.42149 2.50749 3.05199 3.30738 3.64490 3.89814 4.00344 4.13820 4.24602 4.29973 4.47907 4.49462 4.60272 4.63771 4.69864 4.80856 4.94118 5.06272 5.13189 5.18591 5.27148 5.48689 5.51877 5.57038 5.71526 5.91865 5.96061 6.26256 6.35750 6.44117 6.53515 6.77172 7.06431 7.57173 9.06480 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026498 B = 0.004997 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.428481 B = 5601.770228 C = 6048.631729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.095 3.905 3 H 0.019 0.981 4 C 0.026 3.974 5 C -0.482 4.482 6 H 0.070 0.930 7 C -0.004 4.004 8 N -0.942 5.942 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.265 1.265 13 N -0.525 5.525 14 C 0.039 3.961 15 C 0.063 3.937 16 N -0.570 5.570 17 C 0.521 3.479 18 O -0.534 6.534 19 C 0.500 3.500 20 O -0.483 6.483 21 O -0.479 6.479 22 C 0.124 3.876 23 C 0.051 3.949 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.054 0.946 27 H -0.007 1.007 28 H -0.006 1.006 29 H 0.256 0.744 30 H 0.028 0.972 31 H 0.105 0.895 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.444 0.556 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.023 0.977 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 6.142 -19.060 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.013 4.013 3 H 0.036 0.964 4 C -0.011 4.011 5 C -0.520 4.520 6 H 0.088 0.912 7 C -0.200 4.200 8 N -0.584 5.584 9 Si 0.777 3.223 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.189 1.189 13 N -0.250 5.250 14 C -0.090 4.090 15 C -0.057 4.057 16 N -0.304 5.304 17 C 0.304 3.696 18 O -0.412 6.412 19 C 0.338 3.662 20 O -0.372 6.372 21 O -0.292 6.292 22 C 0.002 3.998 23 C -0.078 4.078 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.011 0.989 28 H 0.012 0.988 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.123 0.877 32 H 0.177 0.823 33 H 0.101 0.899 34 H 0.309 0.691 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.041 0.959 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.503 5.343 -18.609 19.368 hybrid contribution 0.159 0.087 0.427 0.464 sum -0.344 5.430 -18.182 18.979 Atomic orbital electron populations 1.21650 0.93588 1.02061 1.00663 1.21555 0.96418 0.93078 0.90230 0.96359 1.19190 0.94502 0.95620 0.91752 1.21407 1.34680 0.94996 1.00950 0.91177 1.25808 0.96172 1.02377 0.95611 1.70105 1.44210 1.37050 1.07073 0.85660 0.78864 0.81044 0.76701 1.20548 1.21949 1.18902 1.61870 1.12833 1.48353 1.01954 1.22623 1.02508 0.94369 0.89458 1.23457 0.78347 1.01913 1.02008 1.48212 1.11307 1.57022 1.13900 1.19096 0.85474 0.81272 0.83787 1.90797 1.18501 1.51312 1.80553 1.22627 0.83441 0.75725 0.84397 1.90481 1.18132 1.50819 1.77788 1.84589 1.42303 1.71951 1.30399 1.21960 1.00804 0.96581 0.80445 1.22439 0.88531 0.97912 0.98915 0.93342 0.91534 0.92673 0.98872 0.98759 0.93500 0.95343 0.87735 0.82293 0.89876 0.69071 0.89627 0.88796 0.95870 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 8.92 71.98 0.64 -3.53 16 2 C 0.09 3.65 2.36 44.92 0.11 3.75 16 3 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 4 C 0.03 1.31 4.17 29.85 0.12 1.43 16 5 C -0.48 -25.34 7.33 25.60 0.19 -25.15 16 6 H 0.07 3.62 6.87 -2.91 -0.02 3.60 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -56.16 13.29 21.45 0.28 -55.87 16 9 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 13 N -0.52 -18.17 3.83 -869.06 -3.33 -21.50 16 14 C 0.04 1.03 5.46 86.38 0.47 1.50 16 15 C 0.06 1.51 6.38 86.35 0.55 2.06 16 16 N -0.57 -15.56 3.00 -818.64 -2.46 -18.02 16 17 C 0.52 14.04 7.77 87.27 0.68 14.72 16 18 O -0.53 -17.65 16.43 9.28 0.15 -17.49 16 19 C 0.50 10.00 8.32 70.84 0.59 10.59 16 20 O -0.48 -9.69 13.81 20.63 0.28 -9.40 16 21 O -0.48 -6.90 13.30 -49.61 -0.66 -7.56 16 22 C 0.12 3.82 6.62 86.50 0.57 4.40 16 23 C 0.05 1.80 5.08 86.54 0.44 2.24 16 24 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.07 1.80 6.41 -2.39 -0.02 1.79 16 26 H 0.05 2.09 6.93 -2.38 -0.02 2.07 16 27 H -0.01 -0.37 6.36 -2.39 -0.02 -0.38 16 28 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 30 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 2.46 6.17 -2.39 -0.01 2.45 16 32 H 0.16 3.42 3.88 -77.24 -0.30 3.12 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.44 0.91 9.11 -74.06 -0.67 0.24 16 35 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.09 2.90 7.07 -2.39 -0.02 2.88 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 3.65 5.44 -2.38 -0.01 3.64 16 Total: -1.00 -67.35 305.91 1.26 -66.09 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.13 Total: 5.54 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 4.82 Total: 12.26 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -5.50 Total: -95.39 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.22 Total: -34.46 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -67.35 1.26 -66.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695715426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.804 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds