Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.36738 * 2 1 4 4 C 1.54373 * 110.32230 * 122.18368 * 2 1 3 5 5 N 1.48557 * 104.59941 * 142.74895 * 4 2 1 6 6 C 1.46898 * 111.00637 * 200.95719 * 5 4 2 7 7 C 1.50696 * 109.47190 * 290.12561 * 6 5 4 8 8 O 1.21290 * 119.99932 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00334 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00228 * 180.02562 * 9 7 6 11 11 H 1.07995 * 120.00021 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99798 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99782 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00243 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47280 * 89.99917 * 14 12 10 16 16 H 1.48498 * 109.46899 * 209.99874 * 14 12 10 17 17 H 1.48499 * 109.46949 * 329.99884 * 14 12 10 18 18 C 1.48832 * 104.23125 * 320.49064 * 5 4 2 19 19 C 1.54259 * 110.32199 * 237.81657 * 2 1 3 20 20 C 1.53001 * 110.32521 * 0.10401 * 19 2 1 21 21 C 1.50706 * 110.32318 * 122.20999 * 19 2 1 22 22 O 1.20825 * 119.99859 * 358.56755 * 21 19 2 23 23 O 1.34224 * 120.00295 * 178.57713 * 21 19 2 24 24 H 1.09006 * 109.47037 * 182.17991 * 1 2 3 25 25 H 1.09001 * 109.47200 * 302.17982 * 1 2 3 26 26 H 1.09000 * 109.46949 * 62.18479 * 1 2 3 27 27 H 1.09000 * 110.41202 * 261.52906 * 4 2 1 28 28 H 1.09003 * 110.41646 * 23.96915 * 4 2 1 29 29 H 1.09000 * 109.46606 * 50.12747 * 6 5 4 30 30 H 1.08997 * 109.47150 * 170.11909 * 6 5 4 31 31 H 0.97004 * 119.99366 * 0.02562 * 9 7 6 32 32 H 0.96994 * 119.99714 * 180.02562 * 13 12 10 33 33 H 1.08995 * 110.45253 * 280.76994 * 18 5 4 34 34 H 1.09005 * 110.49288 * 158.24517 * 18 5 4 35 35 H 1.09007 * 109.47011 * 181.42691 * 20 19 2 36 36 H 1.09001 * 109.47377 * 301.42132 * 20 19 2 37 37 H 1.08994 * 109.47235 * 61.42670 * 20 19 2 38 38 H 0.96700 * 117.00196 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0662 -0.7711 1.2252 5 7 3.2693 -1.4829 0.7225 6 6 3.6068 -2.6217 1.5868 7 6 4.1190 -2.1138 2.9099 8 8 4.1958 -0.9204 3.1128 9 7 4.4917 -2.9854 3.8679 10 6 4.9572 -2.5233 5.0718 11 1 5.0255 -1.4607 5.2524 12 6 5.3409 -3.4220 6.0595 13 7 5.7876 -2.9790 7.2133 14 14 5.2234 -5.2600 5.7469 15 1 6.4979 -5.7446 5.1589 16 1 4.9701 -5.9649 7.0291 17 1 4.1085 -5.5314 4.8042 18 6 2.8800 -1.9437 -0.6380 19 6 2.0658 -0.7705 -1.2243 20 6 0.9049 -1.2991 -2.0692 21 6 2.9539 0.1194 -2.0552 22 8 3.1301 1.2698 -1.7305 23 8 3.5491 -0.3658 -3.1561 24 1 -0.3633 -1.0270 0.0391 25 1 -0.3634 0.5473 0.8698 26 1 -0.3633 0.4795 -0.9089 27 1 2.3393 -0.0780 2.0209 28 1 1.3229 -1.4849 1.5803 29 1 2.7170 -3.2296 1.7508 30 1 4.3765 -3.2264 1.1071 31 1 4.4306 -3.9398 3.7055 32 1 6.0558 -3.6064 7.9027 33 1 2.2633 -2.8402 -0.5746 34 1 3.7655 -2.1326 -1.2449 35 1 1.2984 -1.8621 -2.9156 36 1 0.2787 -1.9504 -1.4594 37 1 0.3106 -0.4617 -2.4346 38 1 4.1092 0.2429 -3.6569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710199143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = -114.431830 kcal Electronic energy + Delta-G solvation = -21389.586562 eV Core-core repulsion = 18039.350262 eV Total energy + Delta-G solvation = -3350.236300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01662 -39.05155 -37.88236 -36.16351 -34.34167 -33.65923 -31.64938 -31.19991 -28.50474 -25.85203 -25.79777 -24.26677 -22.69973 -21.39149 -19.37932 -18.92588 -18.22237 -17.88852 -17.12406 -16.08403 -15.82251 -15.07276 -14.86835 -14.79448 -14.54295 -14.12186 -13.80487 -13.39975 -13.22531 -12.81095 -12.59743 -12.35219 -12.25482 -12.01403 -11.87342 -11.76405 -11.55424 -11.39754 -11.11989 -11.02770 -10.70940 -10.58939 -10.49872 -10.37780 -9.96107 -9.53984 -8.63242 -8.17757 -8.10930 -6.29375 -3.80691 2.17792 2.89959 3.02659 3.07481 3.15491 3.75122 3.90674 4.11413 4.22993 4.41901 4.68646 4.84675 5.06137 5.09780 5.21322 5.23280 5.27063 5.33192 5.53086 5.53664 5.56833 5.63877 5.75345 5.77220 5.82780 5.84079 5.95176 6.06114 6.28382 6.38884 6.48983 6.97328 7.06127 7.59927 7.83912 8.16274 8.62153 8.97285 9.44197 9.85571 10.83899 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032328 B = 0.004209 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.925319 B = 6651.426183 C = 6693.964440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.104 0.896 4 C 0.043 3.957 5 N -0.487 5.487 6 C 0.032 3.968 7 C 0.454 3.546 8 O -0.557 6.557 9 N -0.592 5.592 10 C -0.303 4.303 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.042 3.958 19 C -0.052 4.052 20 C -0.138 4.138 21 C 0.496 3.504 22 O -0.505 6.505 23 O -0.517 6.517 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.370 0.630 32 H 0.273 0.727 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.421 -1.804 -20.017 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.122 0.878 4 C -0.085 4.085 5 N -0.210 5.210 6 C -0.100 4.100 7 C 0.239 3.761 8 O -0.438 6.438 9 N -0.232 5.232 10 C -0.432 4.432 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 C -0.086 4.086 19 C -0.054 4.054 20 C -0.196 4.196 21 C 0.338 3.662 22 O -0.392 6.392 23 O -0.328 6.328 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.202 0.798 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -9.995 -0.641 -19.328 21.769 hybrid contribution -0.196 -1.755 -0.325 1.796 sum -10.191 -2.396 -19.654 22.268 Atomic orbital electron populations 1.21951 0.94127 1.01925 1.02120 1.22117 0.95714 1.01523 0.91638 0.87760 1.23293 0.90011 0.97860 0.97338 1.65252 1.33714 1.21563 1.00478 1.22097 1.00722 0.92774 0.94415 1.19572 0.84302 0.87187 0.85033 1.90561 1.57313 1.15411 1.80518 1.42197 1.59509 1.07042 1.14473 1.19427 1.38943 0.96646 0.88200 0.86283 1.25030 0.97368 0.98443 0.95319 1.69623 1.42792 1.35057 1.04773 0.86674 0.78713 0.85453 0.78546 1.19616 1.20214 1.19575 1.23285 0.98903 0.94569 0.91858 1.21229 0.94332 0.95240 0.94602 1.21960 0.96371 1.01636 0.99613 1.23088 0.77812 0.86902 0.78410 1.90697 1.59755 1.19630 1.69087 1.84502 1.60957 1.48773 1.38604 0.92315 0.91943 0.92271 0.87757 0.93882 0.92930 0.89040 0.79766 0.91646 0.92293 0.89227 0.91383 0.90601 0.91565 0.73359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 7.94 37.16 0.29 -1.11 16 2 C -0.09 -1.18 3.24 -89.24 -0.29 -1.47 16 3 H 0.10 1.59 6.46 -51.93 -0.34 1.26 16 4 C 0.04 0.67 5.35 -2.19 -0.01 0.66 16 5 N -0.49 -7.99 5.07 -231.18 -1.17 -9.16 16 6 C 0.03 0.53 5.30 -4.98 -0.03 0.51 16 7 C 0.45 10.41 7.58 -10.99 -0.08 10.33 16 8 O -0.56 -15.13 14.42 5.55 0.08 -15.05 16 9 N -0.59 -14.19 5.09 -10.97 -0.06 -14.24 16 10 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 11 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.93 13.96 55.50 0.77 -25.15 16 14 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 18 C 0.04 0.51 5.58 -2.03 -0.01 0.50 16 19 C -0.05 -0.60 0.96 -154.28 -0.15 -0.75 16 20 C -0.14 -1.12 7.19 37.16 0.27 -0.85 16 21 C 0.50 6.29 6.90 36.01 0.25 6.54 16 22 O -0.51 -8.11 16.01 -18.75 -0.30 -8.41 16 23 O -0.52 -4.88 13.14 -39.24 -0.52 -5.39 16 24 H 0.06 0.50 6.72 -51.93 -0.35 0.15 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.50 6.83 -51.93 -0.35 0.15 16 27 H 0.10 2.01 6.91 -51.93 -0.36 1.65 16 28 H 0.04 0.62 7.51 -51.93 -0.39 0.23 16 29 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 30 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 31 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.06 0.60 7.71 -51.93 -0.40 0.20 16 34 H 0.09 1.06 7.68 -51.93 -0.40 0.66 16 35 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 36 H 0.08 0.54 6.69 -51.93 -0.35 0.19 16 37 H 0.07 0.50 6.88 -51.93 -0.36 0.14 16 38 H 0.41 2.23 9.10 45.56 0.41 2.64 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -35.22 308.11 -5.61 -40.84 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -4.34 Total: 10.65 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -0.01 Total: 6.61 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.45 Total: -48.56 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.74 Total: -28.86 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.22 -5.61 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710199143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.597 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds