Wall clock time and date at job start Mon Mar 30 2020 02:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.36738 * 2 1 4 4 C 1.54373 * 110.32230 * 122.18368 * 2 1 3 5 5 N 1.48557 * 104.59941 * 142.74895 * 4 2 1 6 6 C 1.46898 * 111.00637 * 200.95719 * 5 4 2 7 7 C 1.50696 * 109.47190 * 290.12561 * 6 5 4 8 8 O 1.21290 * 119.99932 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00334 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00228 * 180.02562 * 9 7 6 11 11 H 1.07995 * 120.00021 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99798 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99782 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00243 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47280 * 89.99917 * 14 12 10 16 16 H 1.48498 * 109.46899 * 209.99874 * 14 12 10 17 17 H 1.48499 * 109.46949 * 329.99884 * 14 12 10 18 18 C 1.48832 * 104.23125 * 320.49064 * 5 4 2 19 19 C 1.54259 * 110.32199 * 237.81657 * 2 1 3 20 20 C 1.53001 * 110.32521 * 0.10401 * 19 2 1 21 21 C 1.50706 * 110.32318 * 122.20999 * 19 2 1 22 22 O 1.20825 * 119.99859 * 358.56755 * 21 19 2 23 23 O 1.34224 * 120.00295 * 178.57713 * 21 19 2 24 24 H 1.09006 * 109.47037 * 182.17991 * 1 2 3 25 25 H 1.09001 * 109.47200 * 302.17982 * 1 2 3 26 26 H 1.09000 * 109.46949 * 62.18479 * 1 2 3 27 27 H 1.09000 * 110.41202 * 261.52906 * 4 2 1 28 28 H 1.09003 * 110.41646 * 23.96915 * 4 2 1 29 29 H 1.09000 * 109.46606 * 50.12747 * 6 5 4 30 30 H 1.08997 * 109.47150 * 170.11909 * 6 5 4 31 31 H 0.97004 * 119.99366 * 0.02562 * 9 7 6 32 32 H 0.96994 * 119.99714 * 180.02562 * 13 12 10 33 33 H 1.08995 * 110.45253 * 280.76994 * 18 5 4 34 34 H 1.09005 * 110.49288 * 158.24517 * 18 5 4 35 35 H 1.09007 * 109.47011 * 181.42691 * 20 19 2 36 36 H 1.09001 * 109.47377 * 301.42132 * 20 19 2 37 37 H 1.08994 * 109.47235 * 61.42670 * 20 19 2 38 38 H 0.96700 * 117.00196 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0662 -0.7711 1.2252 5 7 3.2693 -1.4829 0.7225 6 6 3.6068 -2.6217 1.5868 7 6 4.1190 -2.1138 2.9099 8 8 4.1958 -0.9204 3.1128 9 7 4.4917 -2.9854 3.8679 10 6 4.9572 -2.5233 5.0718 11 1 5.0255 -1.4607 5.2524 12 6 5.3409 -3.4220 6.0595 13 7 5.7876 -2.9790 7.2133 14 14 5.2234 -5.2600 5.7469 15 1 6.4979 -5.7446 5.1589 16 1 4.9701 -5.9649 7.0291 17 1 4.1085 -5.5314 4.8042 18 6 2.8800 -1.9437 -0.6380 19 6 2.0658 -0.7705 -1.2243 20 6 0.9049 -1.2991 -2.0692 21 6 2.9539 0.1194 -2.0552 22 8 3.1301 1.2698 -1.7305 23 8 3.5491 -0.3658 -3.1561 24 1 -0.3633 -1.0270 0.0391 25 1 -0.3634 0.5473 0.8698 26 1 -0.3633 0.4795 -0.9089 27 1 2.3393 -0.0780 2.0209 28 1 1.3229 -1.4849 1.5803 29 1 2.7170 -3.2296 1.7508 30 1 4.3765 -3.2264 1.1071 31 1 4.4306 -3.9398 3.7055 32 1 6.0558 -3.6064 7.9027 33 1 2.2633 -2.8402 -0.5746 34 1 3.7655 -2.1326 -1.2449 35 1 1.2984 -1.8621 -2.9156 36 1 0.2787 -1.9504 -1.4594 37 1 0.3106 -0.4617 -2.4346 38 1 4.1092 0.2429 -3.6569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710199143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:13 Heat of formation + Delta-G solvation = -144.344365 kcal Electronic energy + Delta-G solvation = -21390.883667 eV Core-core repulsion = 18039.350262 eV Total energy + Delta-G solvation = -3351.533405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99793 -40.47509 -39.32765 -37.10237 -36.07804 -35.08208 -33.73986 -32.10005 -29.78722 -27.16319 -26.74824 -25.74448 -23.81853 -22.50408 -21.26495 -20.26616 -19.76826 -18.82894 -18.08979 -17.74681 -17.00518 -16.64594 -16.22653 -16.03821 -15.79471 -15.12509 -14.97504 -14.88683 -14.61998 -14.38879 -13.93934 -13.65860 -13.33009 -13.10363 -13.03497 -12.80645 -12.64566 -12.52524 -12.41229 -12.31440 -11.98014 -11.94691 -11.68476 -11.50227 -11.44342 -11.36640 -10.41474 -10.24110 -9.39064 -8.40795 -6.02027 1.22314 1.30266 1.36742 1.45450 1.96668 2.08255 2.23914 2.62217 3.13982 3.20695 3.37777 3.47272 3.94304 4.07776 4.16915 4.29926 4.33314 4.37197 4.45358 4.51829 4.62161 4.69475 4.75862 4.81315 4.92049 5.02639 5.15843 5.18944 5.32203 5.44052 5.52867 5.62984 5.85178 5.87480 6.00440 6.60527 6.89162 7.00664 7.40274 7.98814 8.77226 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032328 B = 0.004209 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.925319 B = 6651.426183 C = 6693.964440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.068 0.932 4 C 0.044 3.956 5 N -0.523 5.523 6 C 0.045 3.955 7 C 0.449 3.551 8 O -0.610 6.610 9 N -0.591 5.591 10 C -0.329 4.329 11 H 0.051 0.949 12 C -0.016 4.016 13 N -0.937 5.937 14 Si 0.967 3.033 15 H -0.257 1.257 16 H -0.275 1.275 17 H -0.228 1.228 18 C 0.046 3.954 19 C -0.051 4.051 20 C -0.133 4.133 21 C 0.496 3.504 22 O -0.552 6.552 23 O -0.504 6.504 24 H 0.081 0.919 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.390 0.610 32 H 0.279 0.721 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 -5.890 -23.110 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.083 4.083 5 N -0.248 5.248 6 C -0.087 4.087 7 C 0.237 3.763 8 O -0.494 6.494 9 N -0.233 5.233 10 C -0.458 4.458 11 H 0.069 0.931 12 C -0.214 4.214 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.182 1.182 16 H -0.200 1.200 17 H -0.152 1.152 18 C -0.081 4.081 19 C -0.052 4.052 20 C -0.190 4.190 21 C 0.339 3.661 22 O -0.442 6.442 23 O -0.317 6.317 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.141 0.859 31 H 0.226 0.774 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -11.741 -4.740 -22.481 25.801 hybrid contribution 0.417 -0.303 0.619 0.805 sum -11.324 -5.044 -21.862 25.132 Atomic orbital electron populations 1.21934 0.91435 1.03473 1.02632 1.21996 0.97860 0.99381 0.91512 0.91374 1.23140 0.90411 0.97578 0.97214 1.65121 1.34823 1.22334 1.02484 1.22025 1.02869 0.93175 0.90587 1.20931 0.82137 0.86419 0.86795 1.90553 1.58792 1.18159 1.81917 1.42005 1.59866 1.08243 1.13233 1.18980 1.41485 0.94183 0.91132 0.93066 1.26149 0.95723 1.05421 0.94139 1.69815 1.43749 1.37893 1.06288 0.85336 0.80594 0.75910 0.79474 1.18164 1.20027 1.15150 1.23379 0.99912 0.95796 0.88975 1.21295 0.95314 0.94467 0.94163 1.21991 0.95058 1.02210 0.99695 1.23465 0.77466 0.86402 0.78755 1.90695 1.61408 1.21706 1.70379 1.84454 1.60752 1.48906 1.37603 0.90015 0.92721 0.90688 0.93147 0.92115 0.89188 0.85873 0.77401 0.91156 0.88735 0.88677 0.89894 0.88708 0.91007 0.71343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.94 71.98 0.57 -1.82 16 2 C -0.09 -2.24 3.24 -9.90 -0.03 -2.27 16 3 H 0.07 2.22 6.46 -2.39 -0.02 2.21 16 4 C 0.04 1.40 5.35 86.45 0.46 1.86 16 5 N -0.52 -16.40 5.07 -885.33 -4.49 -20.89 16 6 C 0.04 1.37 5.30 85.56 0.45 1.83 16 7 C 0.45 20.79 7.58 87.66 0.66 21.45 16 8 O -0.61 -35.23 14.42 -3.06 -0.04 -35.27 16 9 N -0.59 -28.19 5.09 -307.00 -1.56 -29.75 16 10 C -0.33 -19.57 10.16 84.04 0.85 -18.72 16 11 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 12 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 13 N -0.94 -57.20 13.96 21.66 0.30 -56.90 16 14 Si 0.97 38.70 27.74 68.60 1.90 40.60 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 16 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.23 -7.55 6.52 99.48 0.65 -6.90 16 18 C 0.05 0.95 5.58 86.40 0.48 1.43 16 19 C -0.05 -1.03 0.96 -52.03 -0.05 -1.08 16 20 C -0.13 -1.53 7.19 71.98 0.52 -1.01 16 21 C 0.50 11.90 6.90 71.24 0.49 12.40 16 22 O -0.55 -18.10 16.01 21.97 0.35 -17.75 16 23 O -0.50 -8.25 13.14 -51.35 -0.67 -8.92 16 24 H 0.08 1.06 6.72 -2.38 -0.02 1.05 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.08 6.83 -2.39 -0.02 1.06 16 27 H 0.05 2.10 6.91 -2.39 -0.02 2.09 16 28 H 0.06 1.64 7.51 -2.39 -0.02 1.62 16 29 H 0.09 2.14 7.88 -2.39 -0.02 2.12 16 30 H 0.12 3.04 8.13 -2.39 -0.02 3.02 16 31 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 32 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.09 1.32 7.71 -2.39 -0.02 1.30 16 34 H 0.09 1.87 7.68 -2.38 -0.02 1.85 16 35 H 0.08 0.76 8.13 -2.38 -0.02 0.74 16 36 H 0.09 0.78 6.69 -2.39 -0.02 0.77 16 37 H 0.07 0.78 6.88 -2.39 -0.02 0.76 16 38 H 0.43 3.77 9.10 -74.06 -0.67 3.09 16 Total: -1.00 -86.23 308.11 0.51 -85.73 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.17 Total: 29.52 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 4.88 Total: 13.63 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -5.75 Total: -107.53 kcal Atomic # 8 Polarization: -61.58 SS G_CDS: -0.37 Total: -61.95 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.90 Total: 40.60 kcal Total: -86.23 0.51 -85.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710199143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.618 kcal (2) G-P(sol) polarization free energy of solvation -86.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds