Wall clock time and date at job start Mon Mar 30 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47223 * 2 1 4 4 C 1.50699 * 109.47586 * 120.00443 * 2 1 3 5 5 H 1.07998 * 120.00369 * 119.99900 * 4 2 1 6 6 C 1.37882 * 119.99703 * 299.99898 * 4 2 1 7 7 N 1.31506 * 119.99907 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99685 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47330 * 60.00119 * 8 6 4 10 10 H 1.48504 * 109.46871 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47078 * 299.99958 * 8 6 4 12 12 O 1.45204 * 109.46902 * 240.00454 * 2 1 3 13 13 C 1.34229 * 116.99875 * 89.99882 * 12 2 1 14 14 O 1.20829 * 120.00313 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99767 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.52724 * 299.91488 * 15 13 12 17 17 C 1.53355 * 109.68459 * 179.75123 * 15 13 12 18 18 C 1.53043 * 109.61007 * 178.74965 * 17 15 13 19 19 C 1.53186 * 109.31444 * 61.36922 * 18 17 15 20 20 N 1.46929 * 108.77937 * 305.37106 * 19 18 17 21 21 C 1.34776 * 120.63147 * 233.58736 * 20 19 18 22 22 N 1.34782 * 119.99788 * 354.78640 * 21 20 19 23 23 O 1.21585 * 120.00144 * 174.79140 * 21 20 19 24 24 C 1.46926 * 118.73953 * 53.60189 * 20 19 18 25 25 H 1.08998 * 109.47623 * 59.99905 * 1 2 3 26 26 H 1.09008 * 109.46702 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46713 * 299.99561 * 1 2 3 28 28 H 0.96999 * 120.00077 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.41778 * 58.71246 * 17 15 13 30 30 H 1.09005 * 109.42160 * 298.78443 * 17 15 13 31 31 H 1.09004 * 109.49453 * 301.42463 * 18 17 15 32 32 H 1.08999 * 109.50179 * 181.32735 * 18 17 15 33 33 H 1.09002 * 109.59114 * 185.58026 * 19 18 17 34 34 H 1.08999 * 109.70329 * 65.22398 * 19 18 17 35 35 H 0.96993 * 119.99639 * 4.97574 * 22 21 20 36 36 H 0.97003 * 119.99571 * 184.97156 * 22 21 20 37 37 H 1.08999 * 109.58273 * 66.18471 * 24 20 19 38 38 H 1.08995 * 109.58678 * 186.46656 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3216 -1.1205 4.0078 9 1 3.8066 -1.1211 4.0080 10 1 1.8262 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0075 12 8 2.0139 -0.6844 -1.1857 13 6 2.2170 0.0642 -2.2811 14 8 1.9972 1.2519 -2.2506 15 6 2.7192 -0.5768 -3.5492 16 1 3.6890 -1.0388 -3.3646 17 6 2.8599 0.4868 -4.6450 18 6 3.3994 -0.1603 -5.9227 19 6 2.4107 -1.2250 -6.4078 20 7 2.1589 -2.1710 -5.3122 21 6 2.3240 -3.4957 -5.4972 22 7 2.6211 -3.9732 -6.7221 23 8 2.2048 -4.2601 -4.5592 24 6 1.7234 -1.6454 -4.0111 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7089 1.1611 3.4844 29 1 3.5497 1.2618 -4.3113 30 1 1.8849 0.9307 -4.8466 31 1 4.3629 -0.6260 -5.7156 32 1 3.5210 0.6013 -6.6929 33 1 2.8350 -1.7568 -7.2595 34 1 1.4749 -0.7503 -6.7029 35 1 2.7872 -3.3596 -7.4546 36 1 2.6688 -4.9306 -6.8709 37 1 0.7320 -1.2031 -4.1090 38 1 1.6919 -2.4550 -3.2820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710714.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:32 Heat of formation + Delta-G solvation = -123.353196 kcal Electronic energy + Delta-G solvation = -21339.333935 eV Core-core repulsion = 17988.710775 eV Total energy + Delta-G solvation = -3350.623160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.59725 -39.49282 -37.35230 -35.67263 -34.11760 -33.23342 -32.44727 -31.41015 -29.44749 -25.58697 -25.27162 -24.52831 -22.30652 -21.03945 -19.87126 -19.27543 -18.56323 -17.19266 -16.79704 -16.55780 -15.67682 -15.51666 -14.94907 -14.91206 -14.57633 -14.28063 -14.02205 -13.53659 -13.21483 -13.09878 -12.74619 -12.18798 -11.77193 -11.62850 -11.27570 -11.14139 -11.06364 -10.99119 -10.80318 -10.65923 -10.35750 -10.27377 -10.24203 -9.83906 -9.61804 -9.49391 -8.88203 -8.75103 -8.45521 -6.14969 -4.21541 2.55664 2.98861 3.11864 3.30149 3.33054 3.35868 3.63467 3.93258 4.36354 4.56760 4.65654 4.71259 4.92654 5.13215 5.17682 5.19961 5.36846 5.55857 5.63884 5.74650 5.81571 5.86528 6.10772 6.21587 6.30013 6.60866 6.66885 6.76138 6.91469 6.94070 7.19343 7.63139 7.70455 7.75663 7.95996 8.17484 8.49961 8.65206 8.91471 9.43800 10.92456 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.004528 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.964304 B = 6181.977588 C = 6829.598208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.352 6.352 13 C 0.459 3.541 14 O -0.519 6.519 15 C -0.098 4.098 16 H 0.107 0.893 17 C -0.104 4.104 18 C -0.134 4.134 19 C 0.109 3.891 20 N -0.627 5.627 21 C 0.708 3.292 22 N -0.870 5.870 23 O -0.585 6.585 24 C 0.140 3.860 25 H 0.015 0.985 26 H 0.038 0.962 27 H 0.099 0.901 28 H 0.266 0.734 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.394 0.606 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.412 -3.626 -20.883 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.199 1.199 12 O -0.268 6.268 13 C 0.301 3.699 14 O -0.409 6.409 15 C -0.118 4.118 16 H 0.125 0.875 17 C -0.141 4.141 18 C -0.172 4.172 19 C -0.014 4.014 20 N -0.365 5.365 21 C 0.408 3.592 22 N -0.441 5.441 23 O -0.462 6.462 24 C 0.016 3.984 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.224 0.776 36 H 0.245 0.755 37 H 0.091 0.909 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.113 -3.541 -19.931 20.481 hybrid contribution 0.386 -0.261 0.384 0.604 sum 3.500 -3.803 -19.547 20.219 Atomic orbital electron populations 1.22160 0.97521 1.00188 1.01348 1.20645 0.91420 0.93849 0.77830 0.93597 1.21008 1.32480 1.13473 0.88909 0.91307 1.24876 0.94920 0.95087 0.99040 1.69887 1.36097 1.22613 1.24234 0.86331 0.79208 0.79611 0.80980 1.20001 1.21060 1.19888 1.86514 1.75433 1.43547 1.21303 1.23035 0.74959 0.85886 0.86004 1.90596 1.48550 1.16876 1.84839 1.21430 1.01689 0.97331 0.91360 0.87535 1.21447 1.03025 0.96844 0.92813 1.21942 0.99004 0.98136 0.98102 1.21700 0.99614 0.91200 0.88925 1.47246 1.71815 1.04265 1.13171 1.15854 0.77660 0.82231 0.83493 1.43159 1.78907 1.11623 1.10382 1.91009 1.58436 1.56262 1.40464 1.21386 0.95692 0.97088 0.84187 0.96573 0.94333 0.88258 0.92386 0.90430 0.90713 0.91184 0.90063 0.90504 0.90926 0.77557 0.75543 0.90946 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.33 37.16 0.35 -3.63 16 2 C 0.21 5.87 2.56 -27.88 -0.07 5.80 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.95 8.90 -34.44 -0.31 -15.26 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.62 11.32 55.43 0.63 -25.00 16 8 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 O -0.35 -8.53 9.79 -39.25 -0.38 -8.91 16 13 C 0.46 9.51 7.23 36.00 0.26 9.77 16 14 O -0.52 -11.96 15.22 -18.75 -0.29 -12.25 16 15 C -0.10 -1.47 2.79 -91.49 -0.26 -1.73 16 16 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 17 C -0.10 -1.23 4.48 -26.53 -0.12 -1.35 16 18 C -0.13 -1.06 6.08 -26.61 -0.16 -1.23 16 19 C 0.11 0.81 6.39 -3.71 -0.02 0.79 16 20 N -0.63 -7.27 2.97 -178.50 -0.53 -7.80 16 21 C 0.71 9.17 8.57 -86.91 -0.74 8.43 16 22 N -0.87 -6.73 8.78 27.64 0.24 -6.49 16 23 O -0.58 -10.58 16.60 5.29 0.09 -10.49 16 24 C 0.14 2.02 5.64 -3.71 -0.02 2.00 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.95 8.14 -51.92 -0.42 0.52 16 27 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 30 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.34 5.65 -51.93 -0.29 0.05 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.39 1.78 6.32 -40.82 -0.26 1.53 16 36 H 0.41 2.72 8.93 -40.82 -0.36 2.35 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.11 1.92 6.99 -51.93 -0.36 1.56 16 LS Contribution 313.26 15.07 4.72 4.72 Total: -1.00 -34.71 313.26 -7.05 -41.75 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.31 Total: 2.68 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.19 Total: 5.26 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.34 Total: -39.28 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.58 Total: -31.65 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.71 -7.05 -41.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710714.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.601 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds