Wall clock time and date at job start Mon Mar 30 2020 02:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47223 * 2 1 4 4 C 1.50699 * 109.47586 * 120.00443 * 2 1 3 5 5 H 1.07998 * 120.00369 * 119.99900 * 4 2 1 6 6 C 1.37882 * 119.99703 * 299.99898 * 4 2 1 7 7 N 1.31506 * 119.99907 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99685 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47330 * 60.00119 * 8 6 4 10 10 H 1.48504 * 109.46871 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47078 * 299.99958 * 8 6 4 12 12 O 1.45204 * 109.46902 * 240.00454 * 2 1 3 13 13 C 1.34229 * 116.99875 * 89.99882 * 12 2 1 14 14 O 1.20829 * 120.00313 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99767 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.52724 * 299.91488 * 15 13 12 17 17 C 1.53355 * 109.68459 * 179.75123 * 15 13 12 18 18 C 1.53043 * 109.61007 * 178.74965 * 17 15 13 19 19 C 1.53186 * 109.31444 * 61.36922 * 18 17 15 20 20 N 1.46929 * 108.77937 * 305.37106 * 19 18 17 21 21 C 1.34776 * 120.63147 * 233.58736 * 20 19 18 22 22 N 1.34782 * 119.99788 * 354.78640 * 21 20 19 23 23 O 1.21585 * 120.00144 * 174.79140 * 21 20 19 24 24 C 1.46926 * 118.73953 * 53.60189 * 20 19 18 25 25 H 1.08998 * 109.47623 * 59.99905 * 1 2 3 26 26 H 1.09008 * 109.46702 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46713 * 299.99561 * 1 2 3 28 28 H 0.96999 * 120.00077 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.41778 * 58.71246 * 17 15 13 30 30 H 1.09005 * 109.42160 * 298.78443 * 17 15 13 31 31 H 1.09004 * 109.49453 * 301.42463 * 18 17 15 32 32 H 1.08999 * 109.50179 * 181.32735 * 18 17 15 33 33 H 1.09002 * 109.59114 * 185.58026 * 19 18 17 34 34 H 1.08999 * 109.70329 * 65.22398 * 19 18 17 35 35 H 0.96993 * 119.99639 * 4.97574 * 22 21 20 36 36 H 0.97003 * 119.99571 * 184.97156 * 22 21 20 37 37 H 1.08999 * 109.58273 * 66.18471 * 24 20 19 38 38 H 1.08995 * 109.58678 * 186.46656 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3216 -1.1205 4.0078 9 1 3.8066 -1.1211 4.0080 10 1 1.8262 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0075 12 8 2.0139 -0.6844 -1.1857 13 6 2.2170 0.0642 -2.2811 14 8 1.9972 1.2519 -2.2506 15 6 2.7192 -0.5768 -3.5492 16 1 3.6890 -1.0388 -3.3646 17 6 2.8599 0.4868 -4.6450 18 6 3.3994 -0.1603 -5.9227 19 6 2.4107 -1.2250 -6.4078 20 7 2.1589 -2.1710 -5.3122 21 6 2.3240 -3.4957 -5.4972 22 7 2.6211 -3.9732 -6.7221 23 8 2.2048 -4.2601 -4.5592 24 6 1.7234 -1.6454 -4.0111 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7089 1.1611 3.4844 29 1 3.5497 1.2618 -4.3113 30 1 1.8849 0.9307 -4.8466 31 1 4.3629 -0.6260 -5.7156 32 1 3.5210 0.6013 -6.6929 33 1 2.8350 -1.7568 -7.2595 34 1 1.4749 -0.7503 -6.7029 35 1 2.7872 -3.3596 -7.4546 36 1 2.6688 -4.9306 -6.8709 37 1 0.7320 -1.2031 -4.1090 38 1 1.6919 -2.4550 -3.2820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710714.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:31 Heat of formation + Delta-G solvation = -148.500489 kcal Electronic energy + Delta-G solvation = -21340.424403 eV Core-core repulsion = 17988.710775 eV Total energy + Delta-G solvation = -3351.713628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81575 -40.98483 -38.53209 -37.47256 -35.37707 -35.07907 -33.37031 -32.51269 -31.45056 -27.47934 -26.49017 -25.82853 -23.65364 -22.47405 -21.24678 -20.52881 -19.45933 -18.81470 -18.47734 -17.92568 -17.29816 -16.98318 -16.51045 -16.10256 -15.78854 -15.36680 -15.32258 -14.89123 -14.51897 -14.14485 -14.09126 -14.01808 -13.56896 -13.23779 -12.98262 -12.83467 -12.60077 -12.40302 -12.18880 -12.04988 -12.00908 -11.74636 -11.56327 -11.41875 -11.22525 -11.01328 -10.70605 -10.60841 -9.67918 -8.30235 -6.47043 1.20510 1.40088 1.44284 1.51941 1.69384 2.03842 2.12590 2.40970 3.00131 3.23567 3.56732 3.71884 3.76812 3.99937 4.07518 4.18181 4.49805 4.52335 4.55881 4.68964 4.73145 4.76584 4.81670 4.86493 5.01230 5.13236 5.14391 5.35578 5.40286 5.47373 5.61423 5.82619 5.89998 6.02744 6.07214 6.57086 6.92650 6.92870 7.24662 7.61686 8.77270 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026261 B = 0.004528 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.964304 B = 6181.977588 C = 6829.598208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.216 3.784 3 H 0.010 0.990 4 C -0.552 4.552 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.981 3.019 9 H -0.268 1.268 10 H -0.274 1.274 11 H -0.266 1.266 12 O -0.364 6.364 13 C 0.453 3.547 14 O -0.544 6.544 15 C -0.085 4.085 16 H 0.111 0.889 17 C -0.101 4.101 18 C -0.124 4.124 19 C 0.103 3.897 20 N -0.623 5.623 21 C 0.701 3.299 22 N -0.843 5.843 23 O -0.645 6.645 24 C 0.147 3.853 25 H 0.026 0.974 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.272 0.728 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.414 0.586 36 H 0.421 0.579 37 H 0.076 0.924 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 -4.124 -23.026 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.028 0.972 4 C -0.590 4.590 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.804 3.196 9 H -0.193 1.193 10 H -0.198 1.198 11 H -0.191 1.191 12 O -0.280 6.280 13 C 0.297 3.703 14 O -0.435 6.435 15 C -0.105 4.105 16 H 0.129 0.871 17 C -0.139 4.139 18 C -0.161 4.161 19 C -0.019 4.019 20 N -0.361 5.361 21 C 0.401 3.599 22 N -0.414 5.414 23 O -0.526 6.526 24 C 0.022 3.978 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.248 0.752 36 H 0.254 0.746 37 H 0.094 0.906 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.917 -4.016 -22.175 22.873 hybrid contribution 0.149 -0.041 0.956 0.968 sum 4.065 -4.057 -21.219 21.982 Atomic orbital electron populations 1.21973 0.96639 1.00299 1.00961 1.20356 0.92115 0.92058 0.79135 0.97209 1.21268 1.33592 1.13913 0.90187 0.91860 1.25798 0.94651 0.95646 1.02013 1.69995 1.36412 1.23561 1.25324 0.85259 0.78819 0.78591 0.76903 1.19329 1.19846 1.19110 1.86518 1.75926 1.43935 1.21669 1.24212 0.73886 0.85736 0.86476 1.90571 1.49609 1.18098 1.85206 1.21537 1.01437 0.98348 0.89205 0.87122 1.21508 1.03071 0.95778 0.93503 1.21940 0.98789 0.98876 0.96539 1.22085 1.00662 0.90714 0.88415 1.47205 1.71332 1.04639 1.12892 1.16114 0.77514 0.82163 0.84142 1.42874 1.77032 1.12528 1.09012 1.90974 1.61042 1.57828 1.42789 1.21066 0.95777 0.95619 0.85366 0.95491 0.93824 0.89974 0.91897 0.91331 0.90945 0.90931 0.86627 0.86591 0.89366 0.75250 0.74585 0.90619 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.50 9.33 71.98 0.67 -6.83 16 2 C 0.22 12.34 2.56 29.85 0.08 12.42 16 3 H 0.01 0.64 7.16 -2.38 -0.02 0.62 16 4 C -0.55 -32.64 8.90 25.60 0.23 -32.41 16 5 H 0.06 3.71 7.81 -2.91 -0.02 3.68 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 8 Si 0.98 44.23 29.54 68.60 2.03 46.26 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 O -0.36 -18.43 9.79 -51.41 -0.50 -18.94 16 13 C 0.45 19.42 7.23 71.24 0.52 19.93 16 14 O -0.54 -25.95 15.22 21.96 0.33 -25.62 16 15 C -0.09 -2.56 2.79 -11.36 -0.03 -2.59 16 16 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 17 C -0.10 -2.24 4.48 30.73 0.14 -2.10 16 18 C -0.12 -1.49 6.08 30.67 0.19 -1.31 16 19 C 0.10 1.11 6.39 86.36 0.55 1.66 16 20 N -0.62 -13.30 2.97 -836.91 -2.49 -15.79 16 21 C 0.70 17.16 8.57 179.05 1.53 18.70 16 22 N -0.84 -10.51 8.78 -184.74 -1.62 -12.13 16 23 O -0.64 -23.61 16.60 -3.99 -0.07 -23.68 16 24 C 0.15 4.25 5.64 86.36 0.49 4.74 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.04 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.08 4.65 6.07 -2.39 -0.01 4.63 16 28 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 30 H 0.07 1.65 8.13 -2.38 -0.02 1.63 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.12 0.37 5.65 -2.39 -0.01 0.36 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.41 1.88 6.32 -92.71 -0.59 1.29 16 36 H 0.42 4.44 8.93 -92.71 -0.83 3.61 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.80 6.99 -2.39 -0.02 2.78 16 Total: -1.00 -79.45 313.26 2.41 -77.04 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -0.32 Total: 12.44 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 4.81 Total: 13.72 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -3.87 Total: -81.22 kcal Atomic # 8 Polarization: -68.00 SS G_CDS: -0.24 Total: -68.24 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -79.45 2.41 -77.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710714.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.458 kcal (2) G-P(sol) polarization free energy of solvation -79.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds