Wall clock time and date at job start Mon Mar 30 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47219 * 2 1 4 4 C 1.50702 * 109.47114 * 120.00474 * 2 1 3 5 5 H 1.07999 * 119.99606 * 114.41828 * 4 2 1 6 6 C 1.37877 * 120.00218 * 294.42182 * 4 2 1 7 7 N 1.31519 * 119.99696 * 0.88407 * 6 4 2 8 8 Si 1.86794 * 120.00208 * 180.88477 * 6 4 2 9 9 H 1.48493 * 109.47364 * 265.00608 * 8 6 4 10 10 H 1.48495 * 109.47000 * 145.00115 * 8 6 4 11 11 H 1.48507 * 109.47139 * 25.00717 * 8 6 4 12 12 O 1.45199 * 109.46806 * 240.00427 * 2 1 3 13 13 C 1.34230 * 117.00086 * 90.00254 * 12 2 1 14 14 O 1.20825 * 120.00178 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00047 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.49754 * 60.00122 * 15 13 12 17 17 C 1.53042 * 109.49820 * 180.02562 * 15 13 12 18 18 C 1.53042 * 109.53763 * 181.31815 * 17 15 13 19 19 C 1.53190 * 109.31002 * 298.63328 * 18 17 15 20 20 N 1.46918 * 108.77867 * 54.63485 * 19 18 17 21 21 C 1.34776 * 120.62993 * 126.43233 * 20 19 18 22 22 N 1.34776 * 120.00042 * 5.17112 * 21 20 19 23 23 O 1.21592 * 120.00355 * 185.17289 * 21 20 19 24 24 C 1.46927 * 118.76575 * 306.41376 * 20 19 18 25 25 H 1.09000 * 109.46851 * 56.80686 * 1 2 3 26 26 H 1.08996 * 109.46983 * 176.81098 * 1 2 3 27 27 H 1.08997 * 109.46828 * 296.81547 * 1 2 3 28 28 H 0.97000 * 119.99966 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.45716 * 301.33474 * 17 15 13 30 30 H 1.08993 * 109.46130 * 61.30540 * 17 15 13 31 31 H 1.08996 * 109.49908 * 58.58724 * 18 17 15 32 32 H 1.09001 * 109.49309 * 178.67796 * 18 17 15 33 33 H 1.09005 * 109.58554 * 174.42884 * 19 18 17 34 34 H 1.09004 * 109.58319 * 294.84495 * 19 18 17 35 35 H 0.97000 * 119.99833 * 5.25314 * 22 21 20 36 36 H 0.97006 * 120.00001 * 185.26109 * 22 21 20 37 37 H 1.08994 * 109.56149 * 293.78266 * 24 20 19 38 38 H 1.09006 * 109.61943 * 173.35723 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5769 -1.6382 1.1337 6 6 1.7968 -0.1764 2.4795 7 7 1.1186 0.9442 2.5982 8 14 2.4408 -1.0442 4.0031 9 1 1.3764 -1.9144 4.5642 10 1 2.8400 -0.0346 5.0162 11 1 3.6180 -1.8734 3.6401 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0642 -2.2811 14 8 1.9974 1.2519 -2.2506 15 6 2.7192 -0.5768 -3.5492 16 1 2.0107 -1.3370 -3.8779 17 6 2.8647 0.4893 -4.6376 18 6 3.3432 -0.1659 -5.9352 19 6 4.7138 -0.8093 -5.7024 20 7 4.6164 -1.7301 -4.5617 21 6 5.0099 -3.0137 -4.6799 22 7 5.5941 -3.4374 -5.8181 23 8 4.8377 -3.7896 -3.7597 24 6 4.0825 -1.2255 -3.2893 25 1 -0.3633 0.5626 -0.8600 26 1 -0.3633 -1.0260 -0.0572 27 1 -0.3633 0.4636 0.9171 28 1 0.9524 1.3198 3.4769 29 1 1.9006 0.9690 -4.8070 30 1 3.5911 1.2367 -4.3190 31 1 2.6295 -0.9308 -6.2412 32 1 3.4240 0.5902 -6.7162 33 1 5.0144 -1.3612 -6.5930 34 1 5.4489 -0.0344 -5.4848 35 1 5.8008 -2.8031 -6.5224 36 1 5.8079 -4.3766 -5.9331 37 1 4.7664 -0.4850 -2.8746 38 1 3.9662 -2.0517 -2.5878 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:35 Heat of formation + Delta-G solvation = -124.710148 kcal Electronic energy + Delta-G solvation = -21345.551978 eV Core-core repulsion = 17994.869976 eV Total energy + Delta-G solvation = -3350.682002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58673 -39.48857 -37.34865 -35.66790 -34.10112 -33.19897 -32.44129 -31.40181 -29.50295 -25.55470 -25.28383 -24.52080 -22.29942 -21.03890 -19.81254 -19.32117 -18.54269 -17.16781 -16.80747 -16.49598 -15.68914 -15.52452 -15.07945 -14.80107 -14.58713 -14.22705 -13.98851 -13.49781 -13.21086 -13.14159 -12.69233 -12.13054 -11.97210 -11.49848 -11.28142 -11.14961 -11.05395 -10.99875 -10.79207 -10.65301 -10.38359 -10.27102 -10.24956 -9.82031 -9.61584 -9.47432 -8.89285 -8.73257 -8.46051 -6.15629 -4.21552 2.56865 3.00344 3.13029 3.28355 3.34019 3.38889 3.64340 3.95984 4.36928 4.58423 4.67016 4.72144 4.93968 5.14720 5.18572 5.21013 5.38111 5.56631 5.65326 5.75589 5.82274 5.88515 6.11912 6.22675 6.31631 6.62714 6.64899 6.77724 6.88357 6.92541 7.16355 7.62660 7.71770 7.72376 7.92453 8.16408 8.51664 8.65336 8.92950 9.44083 10.92861 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023263 B = 0.004828 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.352081 B = 5797.714458 C = 6705.937607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.213 3.787 3 H 0.050 0.950 4 C -0.519 4.519 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.910 3.090 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.270 1.270 12 O -0.352 6.352 13 C 0.459 3.541 14 O -0.518 6.518 15 C -0.097 4.097 16 H 0.106 0.894 17 C -0.104 4.104 18 C -0.133 4.133 19 C 0.108 3.892 20 N -0.627 5.627 21 C 0.708 3.292 22 N -0.870 5.870 23 O -0.585 6.585 24 C 0.139 3.861 25 H 0.017 0.983 26 H 0.037 0.963 27 H 0.091 0.909 28 H 0.266 0.734 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.394 0.606 36 H 0.413 0.587 37 H 0.073 0.927 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 -3.125 -19.719 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.737 3.263 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.195 1.195 12 O -0.268 6.268 13 C 0.301 3.699 14 O -0.408 6.408 15 C -0.117 4.117 16 H 0.124 0.876 17 C -0.142 4.142 18 C -0.171 4.171 19 C -0.015 4.015 20 N -0.365 5.365 21 C 0.407 3.593 22 N -0.441 5.441 23 O -0.462 6.462 24 C 0.016 3.984 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.224 0.776 36 H 0.244 0.756 37 H 0.092 0.908 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.786 -3.040 -18.788 20.206 hybrid contribution 0.301 -0.236 0.382 0.541 sum 7.087 -3.276 -18.406 19.993 Atomic orbital electron populations 1.22117 0.97783 0.99606 1.01414 1.20654 0.91208 0.94135 0.77894 0.93202 1.21043 1.36597 1.09065 0.89038 0.91187 1.24896 0.95007 0.95005 0.99064 1.69942 1.39365 1.19180 1.24303 0.86281 0.79321 0.79114 0.81594 1.20434 1.20985 1.19486 1.86515 1.75422 1.43601 1.21290 1.23056 0.75081 0.85843 0.85958 1.90597 1.48877 1.16805 1.84553 1.21375 0.98972 0.99302 0.92049 0.87640 1.21401 1.03252 0.96786 0.92736 1.21935 0.96594 1.00508 0.98086 1.21705 0.98148 0.93232 0.88421 1.47252 1.67009 1.08938 1.13308 1.15862 0.78328 0.82032 0.83029 1.43148 1.68230 1.13508 1.19179 1.91011 1.61988 1.53730 1.39433 1.21408 0.91984 1.00255 0.84735 0.96386 0.94352 0.88994 0.92468 0.90485 0.90652 0.91228 0.90103 0.90426 0.90961 0.77563 0.75563 0.90836 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.41 37.16 0.35 -3.53 16 2 C 0.21 5.82 2.46 -27.88 -0.07 5.75 16 3 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 4 C -0.52 -14.87 8.83 -34.44 -0.30 -15.17 16 5 H 0.07 2.00 7.81 -52.49 -0.41 1.58 16 6 C 0.06 1.75 5.32 -17.82 -0.09 1.65 16 7 N -0.89 -25.70 11.69 55.43 0.65 -25.05 16 8 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 O -0.35 -8.51 9.79 -39.26 -0.38 -8.90 16 13 C 0.46 9.49 7.23 36.01 0.26 9.75 16 14 O -0.52 -11.96 15.20 -18.75 -0.28 -12.25 16 15 C -0.10 -1.45 2.78 -91.65 -0.25 -1.71 16 16 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 17 C -0.10 -1.24 4.46 -26.69 -0.12 -1.36 16 18 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16 19 C 0.11 0.82 6.35 -3.72 -0.02 0.80 16 20 N -0.63 -7.39 2.97 -178.50 -0.53 -7.92 16 21 C 0.71 9.29 8.57 -86.92 -0.74 8.54 16 22 N -0.87 -6.83 8.74 27.63 0.24 -6.59 16 23 O -0.58 -10.69 16.60 5.28 0.09 -10.60 16 24 C 0.14 2.06 5.65 -3.71 -0.02 2.04 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.09 2.50 6.43 -51.93 -0.33 2.17 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 30 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.36 5.74 -51.93 -0.30 0.06 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.39 1.83 6.42 -40.82 -0.26 1.56 16 36 H 0.41 2.76 8.93 -40.82 -0.36 2.40 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.11 1.98 7.00 -51.93 -0.36 1.62 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -34.76 313.98 -7.03 -41.79 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.34 Total: 2.72 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.18 Total: 5.54 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.36 Total: -39.57 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.58 Total: -31.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.76 -7.03 -41.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.917 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds