Wall clock time and date at job start Mon Mar 30 2020 02:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47219 * 2 1 4 4 C 1.50702 * 109.47114 * 120.00474 * 2 1 3 5 5 H 1.07999 * 119.99606 * 114.41828 * 4 2 1 6 6 C 1.37877 * 120.00218 * 294.42182 * 4 2 1 7 7 N 1.31519 * 119.99696 * 0.88407 * 6 4 2 8 8 Si 1.86794 * 120.00208 * 180.88477 * 6 4 2 9 9 H 1.48493 * 109.47364 * 265.00608 * 8 6 4 10 10 H 1.48495 * 109.47000 * 145.00115 * 8 6 4 11 11 H 1.48507 * 109.47139 * 25.00717 * 8 6 4 12 12 O 1.45199 * 109.46806 * 240.00427 * 2 1 3 13 13 C 1.34230 * 117.00086 * 90.00254 * 12 2 1 14 14 O 1.20825 * 120.00178 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00047 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.49754 * 60.00122 * 15 13 12 17 17 C 1.53042 * 109.49820 * 180.02562 * 15 13 12 18 18 C 1.53042 * 109.53763 * 181.31815 * 17 15 13 19 19 C 1.53190 * 109.31002 * 298.63328 * 18 17 15 20 20 N 1.46918 * 108.77867 * 54.63485 * 19 18 17 21 21 C 1.34776 * 120.62993 * 126.43233 * 20 19 18 22 22 N 1.34776 * 120.00042 * 5.17112 * 21 20 19 23 23 O 1.21592 * 120.00355 * 185.17289 * 21 20 19 24 24 C 1.46927 * 118.76575 * 306.41376 * 20 19 18 25 25 H 1.09000 * 109.46851 * 56.80686 * 1 2 3 26 26 H 1.08996 * 109.46983 * 176.81098 * 1 2 3 27 27 H 1.08997 * 109.46828 * 296.81547 * 1 2 3 28 28 H 0.97000 * 119.99966 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.45716 * 301.33474 * 17 15 13 30 30 H 1.08993 * 109.46130 * 61.30540 * 17 15 13 31 31 H 1.08996 * 109.49908 * 58.58724 * 18 17 15 32 32 H 1.09001 * 109.49309 * 178.67796 * 18 17 15 33 33 H 1.09005 * 109.58554 * 174.42884 * 19 18 17 34 34 H 1.09004 * 109.58319 * 294.84495 * 19 18 17 35 35 H 0.97000 * 119.99833 * 5.25314 * 22 21 20 36 36 H 0.97006 * 120.00001 * 185.26109 * 22 21 20 37 37 H 1.08994 * 109.56149 * 293.78266 * 24 20 19 38 38 H 1.09006 * 109.61943 * 173.35723 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5769 -1.6382 1.1337 6 6 1.7968 -0.1764 2.4795 7 7 1.1186 0.9442 2.5982 8 14 2.4408 -1.0442 4.0031 9 1 1.3764 -1.9144 4.5642 10 1 2.8400 -0.0346 5.0162 11 1 3.6180 -1.8734 3.6401 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0642 -2.2811 14 8 1.9974 1.2519 -2.2506 15 6 2.7192 -0.5768 -3.5492 16 1 2.0107 -1.3370 -3.8779 17 6 2.8647 0.4893 -4.6376 18 6 3.3432 -0.1659 -5.9352 19 6 4.7138 -0.8093 -5.7024 20 7 4.6164 -1.7301 -4.5617 21 6 5.0099 -3.0137 -4.6799 22 7 5.5941 -3.4374 -5.8181 23 8 4.8377 -3.7896 -3.7597 24 6 4.0825 -1.2255 -3.2893 25 1 -0.3633 0.5626 -0.8600 26 1 -0.3633 -1.0260 -0.0572 27 1 -0.3633 0.4636 0.9171 28 1 0.9524 1.3198 3.4769 29 1 1.9006 0.9690 -4.8070 30 1 3.5911 1.2367 -4.3190 31 1 2.6295 -0.9308 -6.2412 32 1 3.4240 0.5902 -6.7162 33 1 5.0144 -1.3612 -6.5930 34 1 5.4489 -0.0344 -5.4848 35 1 5.8008 -2.8031 -6.5224 36 1 5.8079 -4.3766 -5.9331 37 1 4.7664 -0.4850 -2.8746 38 1 3.9662 -2.0517 -2.5878 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:34 Heat of formation + Delta-G solvation = -149.926914 kcal Electronic energy + Delta-G solvation = -21346.645459 eV Core-core repulsion = 17994.869976 eV Total energy + Delta-G solvation = -3351.775483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.81891 -40.98197 -38.54043 -37.46625 -35.34702 -35.07464 -33.37654 -32.52815 -31.48723 -27.46551 -26.48790 -25.84637 -23.64199 -22.47544 -21.23738 -20.54073 -19.46401 -18.81669 -18.45649 -17.88171 -17.30338 -17.03623 -16.43211 -16.21640 -15.75355 -15.37529 -15.28271 -14.86384 -14.52441 -14.20394 -14.13691 -13.87156 -13.66994 -13.21326 -13.01417 -12.84400 -12.56475 -12.46564 -12.18228 -12.04204 -12.00930 -11.71567 -11.57848 -11.41371 -11.22523 -11.02359 -10.70115 -10.61316 -9.67964 -8.31323 -6.47105 1.20227 1.40334 1.41790 1.53989 1.70048 2.04815 2.11820 2.40931 3.00288 3.24574 3.57709 3.71726 3.77085 4.00464 4.08120 4.18041 4.49587 4.51752 4.55565 4.69554 4.73840 4.76002 4.80523 4.86395 5.01379 5.11575 5.13174 5.35940 5.40243 5.47598 5.57887 5.83037 5.86937 6.02907 6.07252 6.58302 6.92916 6.93355 7.24885 7.61739 8.77596 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023263 B = 0.004828 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.352081 B = 5797.714458 C = 6705.937607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.215 3.785 3 H 0.013 0.987 4 C -0.548 4.548 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.980 3.020 9 H -0.267 1.267 10 H -0.274 1.274 11 H -0.268 1.268 12 O -0.364 6.364 13 C 0.453 3.547 14 O -0.544 6.544 15 C -0.083 4.083 16 H 0.115 0.885 17 C -0.102 4.102 18 C -0.123 4.123 19 C 0.101 3.899 20 N -0.623 5.623 21 C 0.701 3.299 22 N -0.842 5.842 23 O -0.645 6.645 24 C 0.146 3.854 25 H 0.027 0.973 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.271 0.729 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.414 0.586 36 H 0.421 0.579 37 H 0.071 0.929 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.141 -3.593 -21.825 23.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.162 3.838 3 H 0.031 0.969 4 C -0.586 4.586 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.803 3.197 9 H -0.192 1.192 10 H -0.199 1.199 11 H -0.192 1.192 12 O -0.281 6.281 13 C 0.296 3.704 14 O -0.435 6.435 15 C -0.103 4.103 16 H 0.132 0.868 17 C -0.139 4.139 18 C -0.160 4.160 19 C -0.020 4.020 20 N -0.361 5.361 21 C 0.401 3.599 22 N -0.414 5.414 23 O -0.527 6.527 24 C 0.021 3.979 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.248 0.752 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.832 -3.485 -20.991 22.674 hybrid contribution -0.002 -0.028 0.944 0.944 sum 7.830 -3.513 -20.047 21.806 Atomic orbital electron populations 1.21940 0.96781 1.00063 1.00864 1.20363 0.91979 0.92282 0.79166 0.96887 1.21278 1.37672 1.09331 0.90303 0.91876 1.25799 0.94747 0.95579 1.02014 1.70045 1.39704 1.20247 1.25423 0.85215 0.78884 0.78170 0.77440 1.19216 1.19944 1.19243 1.86517 1.75908 1.43972 1.21658 1.24233 0.74003 0.85698 0.86425 1.90572 1.49916 1.18046 1.84953 1.21481 0.98928 1.00264 0.89643 0.86757 1.21461 1.03120 0.95825 0.93523 1.21932 0.96574 1.01248 0.96297 1.22098 0.98467 0.93345 0.88074 1.47202 1.66324 1.09279 1.13248 1.16121 0.78454 0.81846 0.83515 1.42857 1.66283 1.14452 1.17804 1.90976 1.64364 1.55438 1.41877 1.21068 0.91960 0.98838 0.86054 0.95437 0.93421 0.90740 0.91943 0.91091 0.91207 0.90781 0.86674 0.86477 0.89560 0.75233 0.74583 0.91029 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.31 9.41 71.98 0.68 -6.63 16 2 C 0.22 12.23 2.46 29.85 0.07 12.30 16 3 H 0.01 0.84 7.16 -2.39 -0.02 0.82 16 4 C -0.55 -32.37 8.83 25.60 0.23 -32.14 16 5 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 6 C 0.02 1.05 5.32 84.65 0.45 1.50 16 7 N -0.92 -53.84 11.69 21.45 0.25 -53.59 16 8 Si 0.98 44.42 29.54 68.60 2.03 46.45 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 O -0.36 -18.38 9.79 -51.42 -0.50 -18.88 16 13 C 0.45 19.36 7.23 71.24 0.52 19.88 16 14 O -0.54 -25.97 15.20 21.97 0.33 -25.63 16 15 C -0.08 -2.49 2.78 -11.46 -0.03 -2.52 16 16 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 17 C -0.10 -2.26 4.46 30.62 0.14 -2.12 16 18 C -0.12 -1.49 6.08 30.67 0.19 -1.30 16 19 C 0.10 1.14 6.35 86.36 0.55 1.68 16 20 N -0.62 -13.62 2.97 -836.91 -2.49 -16.11 16 21 C 0.70 17.45 8.57 179.05 1.53 18.98 16 22 N -0.84 -10.71 8.74 -184.74 -1.61 -12.33 16 23 O -0.64 -23.93 16.60 -4.01 -0.07 -23.99 16 24 C 0.15 4.36 5.65 86.36 0.49 4.85 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.07 4.17 6.43 -2.39 -0.02 4.15 16 28 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 29 H 0.07 1.68 8.07 -2.39 -0.02 1.66 16 30 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.12 0.42 5.74 -2.38 -0.01 0.40 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.41 1.98 6.42 -92.71 -0.60 1.38 16 36 H 0.42 4.53 8.93 -92.70 -0.83 3.70 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.08 2.88 7.00 -2.38 -0.02 2.87 16 Total: -1.00 -79.63 313.98 2.41 -77.22 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -0.33 Total: 12.38 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 4.80 Total: 14.48 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -3.85 Total: -82.03 kcal Atomic # 8 Polarization: -68.27 SS G_CDS: -0.24 Total: -68.50 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -79.63 2.41 -77.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.703 kcal (2) G-P(sol) polarization free energy of solvation -79.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds