Wall clock time and date at job start Mon Mar 30 2020 02:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46822 * 2 1 4 4 O 1.42905 * 109.46716 * 119.99619 * 2 1 3 5 5 C 1.42901 * 113.99572 * 150.00198 * 4 2 1 6 6 C 1.52998 * 109.47184 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.53408 * 176.37845 * 6 5 4 8 8 C 1.51576 * 110.60122 * 53.54382 * 6 5 4 9 9 O 1.21236 * 127.15854 * 61.50783 * 8 6 5 10 10 N 1.34769 * 105.68810 * 241.47666 * 8 6 5 11 11 C 1.46493 * 124.17873 * 179.97438 * 10 8 6 12 12 C 1.50706 * 109.47128 * 90.00054 * 11 10 8 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.33794 * 111.64171 * 0.22809 * 10 8 6 21 21 O 1.21541 * 123.76873 * 179.76933 * 20 10 8 22 22 N 1.34531 * 112.45622 * 359.60069 * 20 10 8 23 23 C 1.46501 * 126.68916 * 180.19721 * 22 20 10 24 24 H 1.08998 * 109.47100 * 300.00376 * 1 2 3 25 25 H 1.09001 * 109.46929 * 60.00260 * 1 2 3 26 26 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47100 * 239.99624 * 2 1 3 28 28 H 1.09008 * 109.46929 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47156 * 299.99600 * 3 2 1 30 30 H 1.08998 * 109.47590 * 59.99924 * 3 2 1 31 31 H 1.08996 * 109.47126 * 59.99496 * 5 4 2 32 32 H 1.09005 * 109.47206 * 300.00063 * 5 4 2 33 33 H 1.09001 * 109.47786 * 330.00326 * 11 10 8 34 34 H 1.09006 * 109.47401 * 209.99912 * 11 10 8 35 35 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 36 36 H 1.09000 * 109.47275 * 270.22101 * 23 22 20 37 37 H 1.09000 * 109.46908 * 30.22157 * 23 22 20 38 38 H 1.08998 * 109.47114 * 150.21621 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2660 -1.3244 0.9888 6 6 3.6754 -2.0091 2.2943 7 1 4.6034 -2.5648 2.1599 8 6 2.5717 -2.9247 2.7853 9 8 2.1167 -3.8937 2.2163 10 7 2.2019 -2.4380 3.9864 11 6 1.1525 -3.0238 4.8241 12 6 1.7594 -4.0517 5.7441 13 1 2.8207 -4.2491 5.7080 14 6 0.9599 -4.7400 6.6317 15 7 -0.3324 -4.5000 6.6753 16 14 1.7122 -6.0146 7.7715 17 1 0.6487 -6.6075 8.6216 18 1 2.3545 -7.0828 6.9644 19 1 2.7314 -5.3661 8.6352 20 6 2.9078 -1.3505 4.3169 21 8 2.7517 -0.7324 5.3516 22 7 3.8122 -1.0199 3.3774 23 6 4.7476 0.1067 3.4209 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 4.0199 -0.5874 0.7125 32 1 3.1809 -2.0707 0.1988 33 1 0.4049 -3.5003 4.1899 34 1 0.6803 -2.2399 5.4163 35 1 -0.7230 -3.8385 6.0831 36 1 4.2806 0.9843 2.9738 37 1 5.0088 0.3222 4.4570 38 1 5.6495 -0.1482 2.8644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794790188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:53 Heat of formation + Delta-G solvation = -91.012565 kcal Electronic energy + Delta-G solvation = -21924.884698 eV Core-core repulsion = 18575.663934 eV Total energy + Delta-G solvation = -3349.220765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73250 -38.49414 -37.85129 -35.75005 -34.87077 -32.94961 -32.75833 -29.94693 -28.18647 -27.35592 -25.88114 -24.10977 -22.89539 -21.52186 -21.18561 -19.83484 -17.40403 -17.27491 -16.60649 -16.20090 -15.84517 -15.63002 -14.89118 -14.49139 -14.40378 -13.89125 -13.84736 -13.67320 -13.47305 -12.88268 -12.78431 -12.57378 -12.38835 -12.34869 -12.19252 -11.79398 -11.63153 -11.56367 -11.19263 -10.86609 -10.64650 -10.15703 -10.03875 -9.72153 -9.57159 -9.47485 -8.73986 -8.41661 -8.25904 -6.44054 -4.16019 2.26891 2.68288 3.37722 3.44763 3.48021 3.58749 3.66585 3.79950 4.36712 4.53523 4.59593 4.82579 4.87010 4.99301 5.02189 5.10355 5.18702 5.27374 5.33464 5.41398 5.50356 5.57505 5.64424 5.68349 5.71172 6.00349 6.10556 6.11805 6.55625 6.69167 6.91904 7.03717 7.08212 7.88430 7.94032 8.09268 8.33551 8.70219 8.84023 9.52754 10.94917 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.005624 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.561315 B = 4977.295794 C = 5361.454882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.083 3.917 3 C -0.173 4.173 4 O -0.373 6.373 5 C 0.068 3.932 6 C 0.091 3.909 7 H 0.131 0.869 8 C 0.534 3.466 9 O -0.477 6.477 10 N -0.548 5.548 11 C 0.242 3.758 12 C -0.612 4.612 13 H 0.053 0.947 14 C 0.025 3.975 15 N -0.904 5.904 16 Si 1.075 2.925 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.706 3.294 21 O -0.542 6.542 22 N -0.630 5.630 23 C 0.127 3.873 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.268 0.732 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.149 10.533 -15.469 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.230 4.230 4 O -0.292 6.292 5 C -0.010 4.010 6 C -0.017 4.017 7 H 0.148 0.852 8 C 0.320 3.680 9 O -0.348 6.348 10 N -0.290 5.290 11 C 0.124 3.876 12 C -0.650 4.650 13 H 0.071 0.929 14 C -0.180 4.180 15 N -0.539 5.539 16 Si 0.902 3.098 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.213 1.213 20 C 0.409 3.591 21 O -0.416 6.416 22 N -0.371 5.371 23 C -0.014 4.014 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.340 9.330 -13.747 18.590 hybrid contribution 0.653 1.194 -1.533 2.050 sum 8.993 10.524 -15.280 20.618 Atomic orbital electron populations 1.21861 0.93471 1.03097 1.02409 1.22082 0.95290 0.92243 0.87879 1.22289 1.01253 0.96890 1.02602 1.88059 1.35634 1.69961 1.35555 1.22612 0.87031 0.96198 0.95201 1.22209 1.00209 0.90333 0.88949 0.85157 1.20286 0.82641 0.83860 0.81243 1.90728 1.57806 1.25229 1.61000 1.46487 1.36412 1.26233 1.19909 1.19581 0.84538 0.94121 0.89372 1.22102 0.96558 1.23716 1.22670 0.92851 1.25847 0.94889 0.99559 0.97729 1.70805 1.11324 1.33199 1.38556 0.83463 0.75222 0.75330 0.75768 1.20466 1.21278 1.21271 1.15850 0.79204 0.80762 0.83295 1.90911 1.69779 1.56057 1.24860 1.47420 1.39421 1.30755 1.19547 1.21326 0.90460 0.86208 1.03435 0.91693 0.91337 0.91730 0.92204 0.92648 0.91753 0.91688 0.91784 0.91034 0.94147 0.93964 0.92155 0.92752 0.90233 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.56 37.16 0.36 -1.29 16 2 C 0.08 0.89 3.34 -26.73 -0.09 0.81 16 3 C -0.17 -1.54 9.53 37.16 0.35 -1.19 16 4 O -0.37 -5.37 9.39 -35.23 -0.33 -5.71 16 5 C 0.07 0.80 5.53 37.16 0.21 1.00 16 6 C 0.09 1.34 3.86 -68.21 -0.26 1.08 16 7 H 0.13 1.48 8.14 -51.93 -0.42 1.05 16 8 C 0.53 11.15 7.17 -10.56 -0.08 11.08 16 9 O -0.48 -11.08 17.76 5.59 0.10 -10.98 16 10 N -0.55 -13.09 2.59 -122.02 -0.32 -13.40 16 11 C 0.24 6.72 4.77 -5.19 -0.02 6.70 16 12 C -0.61 -18.30 9.39 -34.44 -0.32 -18.63 16 13 H 0.05 1.60 7.81 -52.48 -0.41 1.19 16 14 C 0.02 0.73 5.46 -17.82 -0.10 0.64 16 15 N -0.90 -28.06 13.65 55.43 0.76 -27.30 16 16 Si 1.08 26.11 29.90 -169.99 -5.08 21.03 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.71 15.69 8.31 -88.01 -0.73 14.96 16 21 O -0.54 -13.89 17.15 5.33 0.09 -13.80 16 22 N -0.63 -10.19 3.05 -180.28 -0.55 -10.74 16 23 C 0.13 1.44 10.97 59.85 0.66 2.09 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.55 7.79 -51.93 -0.40 0.14 16 28 H 0.05 0.45 7.87 -51.92 -0.41 0.04 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.56 7.85 -51.93 -0.41 0.15 16 32 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.04 1.16 7.87 -51.93 -0.41 0.75 16 34 H 0.04 1.24 7.72 -51.93 -0.40 0.84 16 35 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.96 8.03 -51.93 -0.42 0.55 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -36.94 328.09 -6.17 -43.11 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -5.75 Total: -4.40 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: -0.03 Total: 17.25 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.11 Total: -51.45 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.14 Total: -30.49 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.94 -6.17 -43.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794790188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.903 kcal (2) G-P(sol) polarization free energy of solvation -36.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds