Wall clock time and date at job start Mon Mar 30 2020 02:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46822 * 2 1 4 4 O 1.42905 * 109.46716 * 119.99619 * 2 1 3 5 5 C 1.42901 * 113.99572 * 150.00198 * 4 2 1 6 6 C 1.52998 * 109.47184 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.53408 * 176.37845 * 6 5 4 8 8 C 1.51576 * 110.60122 * 53.54382 * 6 5 4 9 9 O 1.21236 * 127.15854 * 61.50783 * 8 6 5 10 10 N 1.34769 * 105.68810 * 241.47666 * 8 6 5 11 11 C 1.46493 * 124.17873 * 179.97438 * 10 8 6 12 12 C 1.50706 * 109.47128 * 90.00054 * 11 10 8 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.33794 * 111.64171 * 0.22809 * 10 8 6 21 21 O 1.21541 * 123.76873 * 179.76933 * 20 10 8 22 22 N 1.34531 * 112.45622 * 359.60069 * 20 10 8 23 23 C 1.46501 * 126.68916 * 180.19721 * 22 20 10 24 24 H 1.08998 * 109.47100 * 300.00376 * 1 2 3 25 25 H 1.09001 * 109.46929 * 60.00260 * 1 2 3 26 26 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47100 * 239.99624 * 2 1 3 28 28 H 1.09008 * 109.46929 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47156 * 299.99600 * 3 2 1 30 30 H 1.08998 * 109.47590 * 59.99924 * 3 2 1 31 31 H 1.08996 * 109.47126 * 59.99496 * 5 4 2 32 32 H 1.09005 * 109.47206 * 300.00063 * 5 4 2 33 33 H 1.09001 * 109.47786 * 330.00326 * 11 10 8 34 34 H 1.09006 * 109.47401 * 209.99912 * 11 10 8 35 35 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 36 36 H 1.09000 * 109.47275 * 270.22101 * 23 22 20 37 37 H 1.09000 * 109.46908 * 30.22157 * 23 22 20 38 38 H 1.08998 * 109.47114 * 150.21621 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2660 -1.3244 0.9888 6 6 3.6754 -2.0091 2.2943 7 1 4.6034 -2.5648 2.1599 8 6 2.5717 -2.9247 2.7853 9 8 2.1167 -3.8937 2.2163 10 7 2.2019 -2.4380 3.9864 11 6 1.1525 -3.0238 4.8241 12 6 1.7594 -4.0517 5.7441 13 1 2.8207 -4.2491 5.7080 14 6 0.9599 -4.7400 6.6317 15 7 -0.3324 -4.5000 6.6753 16 14 1.7122 -6.0146 7.7715 17 1 0.6487 -6.6075 8.6216 18 1 2.3545 -7.0828 6.9644 19 1 2.7314 -5.3661 8.6352 20 6 2.9078 -1.3505 4.3169 21 8 2.7517 -0.7324 5.3516 22 7 3.8122 -1.0199 3.3774 23 6 4.7476 0.1067 3.4209 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 4.0199 -0.5874 0.7125 32 1 3.1809 -2.0707 0.1988 33 1 0.4049 -3.5003 4.1899 34 1 0.6803 -2.2399 5.4163 35 1 -0.7230 -3.8385 6.0831 36 1 4.2806 0.9843 2.9738 37 1 5.0088 0.3222 4.4570 38 1 5.6495 -0.1482 2.8644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794790188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:53 Heat of formation + Delta-G solvation = -118.145594 kcal Electronic energy + Delta-G solvation = -21926.061275 eV Core-core repulsion = 18575.663934 eV Total energy + Delta-G solvation = -3350.397341 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.32835 -39.70318 -39.33791 -37.28392 -36.76405 -34.93507 -33.76260 -31.18590 -29.86202 -28.15449 -27.45284 -25.66670 -24.84671 -22.68348 -22.27774 -21.47527 -19.41474 -18.66141 -18.03064 -17.76471 -17.24937 -16.84238 -16.30196 -15.88740 -15.72118 -15.65791 -15.32046 -15.29088 -14.66080 -14.38703 -13.94259 -13.92013 -13.69063 -13.45404 -13.44044 -13.17803 -13.08294 -12.65871 -12.56946 -12.41824 -11.96768 -11.82207 -11.67228 -11.62901 -11.17895 -10.70838 -10.58297 -10.48285 -9.92780 -8.85289 -6.59798 0.65107 1.21557 1.47564 1.57204 1.77610 2.06665 2.07894 2.49555 2.56641 2.94575 3.01826 3.62285 3.87311 3.99521 4.09328 4.15866 4.27069 4.35615 4.42661 4.46004 4.51972 4.65822 4.70057 4.71558 4.80344 4.86609 4.89180 4.91505 5.11772 5.22634 5.32301 5.46777 5.56529 5.90651 6.22564 6.27603 6.27713 6.47406 7.08372 7.21592 8.53097 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.005624 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.561315 B = 4977.295794 C = 5361.454882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.076 3.924 3 C -0.166 4.166 4 O -0.415 6.415 5 C 0.067 3.933 6 C 0.106 3.894 7 H 0.181 0.819 8 C 0.520 3.480 9 O -0.511 6.511 10 N -0.569 5.569 11 C 0.255 3.745 12 C -0.628 4.628 13 H 0.048 0.952 14 C -0.025 4.025 15 N -0.921 5.921 16 Si 1.124 2.876 17 H -0.273 1.273 18 H -0.266 1.266 19 H -0.270 1.270 20 C 0.694 3.306 21 O -0.592 6.592 22 N -0.610 5.610 23 C 0.117 3.883 24 H 0.042 0.958 25 H 0.097 0.903 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.019 0.981 34 H 0.013 0.987 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.282 11.006 -17.509 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.020 3.980 3 C -0.223 4.223 4 O -0.336 6.336 5 C -0.010 4.010 6 C -0.001 4.001 7 H 0.197 0.803 8 C 0.309 3.691 9 O -0.385 6.385 10 N -0.311 5.311 11 C 0.134 3.866 12 C -0.666 4.666 13 H 0.067 0.933 14 C -0.224 4.224 15 N -0.557 5.557 16 Si 0.943 3.057 17 H -0.198 1.198 18 H -0.191 1.191 19 H -0.195 1.195 20 C 0.397 3.603 21 O -0.470 6.470 22 N -0.349 5.349 23 C -0.022 4.022 24 H 0.061 0.939 25 H 0.115 0.885 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.528 9.853 -15.875 21.954 hybrid contribution -0.352 1.111 -0.992 1.530 sum 11.176 10.964 -16.867 23.013 Atomic orbital electron populations 1.21915 0.94549 1.01828 1.02752 1.22301 0.94638 0.93460 0.87620 1.22233 1.02216 0.95300 1.02572 1.88033 1.37139 1.70727 1.37678 1.22851 0.87408 0.97591 0.93156 1.22547 0.99301 0.88918 0.89295 0.80260 1.21435 0.83643 0.84088 0.79967 1.90692 1.59387 1.26982 1.61413 1.46503 1.36255 1.27399 1.20897 1.19006 0.85526 0.92895 0.89124 1.22367 0.96415 1.24385 1.23422 0.93348 1.27558 0.94603 1.01210 0.99041 1.70924 1.12337 1.33531 1.38882 0.82877 0.75074 0.73397 0.74328 1.19778 1.19079 1.19521 1.16125 0.80090 0.80159 0.83946 1.90858 1.71508 1.57394 1.27257 1.47625 1.37770 1.31501 1.17993 1.21798 0.91302 0.85142 1.03925 0.93867 0.88474 0.93780 0.89852 0.90978 0.89765 0.93742 0.86998 0.89342 0.96343 0.96865 0.93593 0.91232 0.91478 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.56 71.98 0.69 -2.59 16 2 C 0.08 1.48 3.34 30.60 0.10 1.58 16 3 C -0.17 -2.43 9.53 71.98 0.69 -1.75 16 4 O -0.42 -11.20 9.39 -148.98 -1.40 -12.60 16 5 C 0.07 1.29 5.53 71.98 0.40 1.69 16 6 C 0.11 2.76 3.86 44.37 0.17 2.93 16 7 H 0.18 3.06 8.14 -2.39 -0.02 3.04 16 8 C 0.52 21.73 7.17 87.94 0.63 22.36 16 9 O -0.51 -24.22 17.76 -2.90 -0.05 -24.27 16 10 N -0.57 -28.10 2.59 -777.20 -2.01 -30.11 16 11 C 0.25 15.10 4.77 85.64 0.41 15.51 16 12 C -0.63 -38.96 9.39 25.60 0.24 -38.72 16 13 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 14 C -0.03 -1.54 5.46 84.65 0.46 -1.07 16 15 N -0.92 -59.25 13.65 21.45 0.29 -58.95 16 16 Si 1.12 52.57 29.90 68.60 2.05 54.63 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.69 31.36 8.31 179.44 1.49 32.85 16 21 O -0.59 -31.58 17.15 -3.84 -0.07 -31.65 16 22 N -0.61 -18.29 3.05 -842.70 -2.57 -20.85 16 23 C 0.12 2.19 10.97 127.77 1.40 3.59 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.21 7.79 -2.39 -0.02 1.19 16 28 H 0.07 0.82 7.87 -2.38 -0.02 0.80 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 1.16 7.85 -2.39 -0.02 1.15 16 32 H 0.09 1.46 8.09 -2.38 -0.02 1.44 16 33 H 0.02 1.16 7.87 -2.39 -0.02 1.14 16 34 H 0.01 0.85 7.72 -2.38 -0.02 0.83 16 35 H 0.25 16.68 7.22 -92.71 -0.67 16.01 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.48 8.03 -2.39 -0.02 1.46 16 38 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -87.72 328.09 4.07 -83.65 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.14 Total: 3.79 kcal Atomic # 6 Polarization: 29.70 SS G_CDS: 6.68 Total: 36.38 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.29 Total: -109.92 kcal Atomic # 8 Polarization: -67.00 SS G_CDS: -1.52 Total: -68.52 kcal Atomic # 14 Polarization: 52.57 SS G_CDS: 2.05 Total: 54.63 kcal Total: -87.72 4.07 -83.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794790188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.497 kcal (2) G-P(sol) polarization free energy of solvation -87.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds