Wall clock time and date at job start Mon Mar 30 2020 00:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 112.85331 * 2 1 4 4 C 1.42899 * 113.99607 * 50.33149 * 3 2 1 5 5 C 1.50702 * 109.46876 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72354 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.50694 * 109.47550 * 180.02562 * 8 7 5 10 10 O 1.21297 * 119.99707 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00262 * 180.02562 * 9 8 7 12 12 C 1.37096 * 119.99935 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00186 * 0.02562 * 12 11 9 14 14 C 1.38957 * 119.99926 * 179.97438 * 12 11 9 15 15 N 1.31403 * 119.99982 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00036 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46919 * 60.00231 * 16 14 12 18 18 H 1.48496 * 109.47105 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46877 * 300.00526 * 16 14 12 20 20 C 1.53776 * 113.61384 * 131.19909 * 2 1 3 21 21 C 1.53953 * 87.02233 * 89.22753 * 20 2 1 22 22 C 1.53779 * 113.61407 * 228.80474 * 2 1 3 23 23 H 1.09003 * 109.46687 * 69.66073 * 1 2 3 24 24 H 1.08995 * 109.47345 * 189.66747 * 1 2 3 25 25 H 1.08996 * 109.46734 * 309.66972 * 1 2 3 26 26 H 1.09004 * 109.47206 * 60.00168 * 4 3 2 27 27 H 1.08994 * 109.47548 * 299.99825 * 4 3 2 28 28 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 29 29 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 30 30 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 31 31 H 0.96996 * 120.00282 * 0.02562 * 11 9 8 32 32 H 0.97003 * 120.00258 * 180.02562 * 15 14 12 33 33 H 1.08998 * 113.61553 * 203.74712 * 20 2 1 34 34 H 1.09007 * 113.61374 * 334.65222 * 20 2 1 35 35 H 1.09004 * 113.54057 * 270.81696 * 21 20 2 36 36 H 1.09006 * 113.74721 * 139.94456 * 21 20 2 37 37 H 1.09009 * 113.61579 * 25.35106 * 22 2 1 38 38 H 1.08996 * 113.61959 * 156.25176 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0850 1.3168 0.0000 4 6 1.5428 2.1760 1.0049 5 6 2.1966 3.5307 0.9137 6 8 3.0433 3.7400 0.0709 7 7 1.8362 4.5116 1.7649 8 6 2.4675 5.8303 1.6724 9 6 1.8923 6.7379 2.7290 10 8 1.0392 6.3237 3.4853 11 7 2.3257 8.0098 2.8336 12 6 1.8028 8.8352 3.7952 13 1 1.0438 8.4662 4.4691 14 6 2.2500 10.1464 3.9034 15 7 3.1738 10.5952 3.0838 16 14 1.5379 11.2710 5.2141 17 1 1.7964 10.6918 6.5569 18 1 2.1773 12.6079 5.1198 19 1 0.0737 11.4072 5.0072 20 6 2.1460 -0.9281 1.0602 21 6 2.0950 -2.0420 -0.0013 22 6 2.1460 -0.9280 -1.0602 23 1 -0.3633 0.3572 -0.9636 24 1 -0.3634 -1.0130 0.1726 25 1 -0.3632 0.6560 0.7910 26 1 1.7310 1.7476 1.9894 27 1 0.4684 2.2798 0.8532 28 1 1.1590 4.3444 2.4389 29 1 3.5421 5.7303 1.8256 30 1 2.2792 6.2549 0.6864 31 1 3.0077 8.3411 2.2287 32 1 3.4863 11.5104 3.1596 33 1 3.1585 -0.6478 1.3506 34 1 1.4938 -1.1080 1.9149 35 1 1.1594 -2.6013 -0.0008 36 1 2.9737 -2.6870 -0.0033 37 1 1.4939 -1.1079 -1.9151 38 1 3.1585 -0.6478 -1.3507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:09 Heat of formation + Delta-G solvation = -101.380022 kcal Electronic energy + Delta-G solvation = -20135.071801 eV Core-core repulsion = 16785.401470 eV Total energy + Delta-G solvation = -3349.670331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26317 -39.33231 -38.09418 -35.92589 -34.44574 -33.67393 -31.40748 -29.42447 -29.22623 -26.80045 -25.93194 -24.41685 -23.33592 -20.31544 -19.60809 -19.08015 -18.15042 -17.52291 -16.93817 -16.07623 -15.79539 -15.44213 -15.20467 -14.77772 -14.67326 -14.33868 -13.98973 -13.77190 -13.35671 -13.23953 -12.66729 -12.45689 -12.23634 -12.16457 -11.87015 -11.64553 -11.57134 -11.39330 -11.11572 -11.02796 -10.51867 -10.49237 -10.32616 -9.66595 -9.64151 -9.59995 -8.81979 -8.65429 -8.11829 -6.52644 -3.94904 2.78940 2.87174 3.12826 3.20831 3.24697 3.72335 3.89695 4.10784 4.25865 4.28398 4.48696 4.50095 4.85964 4.89960 5.01064 5.07778 5.14329 5.16081 5.17363 5.38145 5.43918 5.52082 5.57889 5.67892 5.73373 5.89147 5.92748 5.95102 6.05434 6.07632 6.63698 7.02026 7.44510 7.78183 7.90257 8.41404 8.45505 9.02930 9.37624 9.85376 10.64131 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.057964 B = 0.002779 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.940688 B =10072.426210 C =10323.684089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 O -0.344 6.344 4 C 0.044 3.956 5 C 0.511 3.489 6 O -0.530 6.530 7 N -0.707 5.707 8 C 0.111 3.889 9 C 0.428 3.572 10 O -0.598 6.598 11 N -0.548 5.548 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.163 4.163 21 C -0.140 4.140 22 C -0.119 4.119 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.411 0.589 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.396 0.604 32 H 0.275 0.725 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.311 -20.204 -5.291 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 O -0.262 6.262 4 C -0.036 4.036 5 C 0.296 3.704 6 O -0.406 6.406 7 N -0.363 5.363 8 C -0.017 4.017 9 C 0.213 3.787 10 O -0.485 6.485 11 N -0.183 5.183 12 C -0.436 4.436 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.201 4.201 21 C -0.177 4.177 22 C -0.157 4.157 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.249 0.751 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.020 -20.037 -5.543 21.008 hybrid contribution -0.390 0.778 0.808 1.187 sum -3.410 -19.260 -4.735 20.124 Atomic orbital electron populations 1.22125 0.93732 1.03086 1.03249 1.23114 0.93078 0.81847 0.97776 1.88098 1.62837 1.21595 1.53673 1.22143 0.98359 0.89651 0.93478 1.20175 0.83166 0.85548 0.81511 1.90713 1.32172 1.82199 1.35486 1.45572 1.43421 1.11040 1.36262 1.20949 0.98008 0.82987 0.99733 1.19723 0.87091 0.83830 0.88007 1.90491 1.35908 1.75235 1.46891 1.41790 1.36334 1.08932 1.31214 1.19683 1.20963 0.91917 1.11010 0.87709 1.25334 0.96328 0.97668 0.98361 1.69604 1.28566 1.17997 1.37263 0.85865 0.79078 0.78546 0.80433 1.19759 1.20838 1.19763 1.23640 1.02349 0.96655 0.97413 1.22718 1.02439 0.96078 0.96464 1.23060 1.02351 0.93748 0.96505 0.91211 0.90950 0.91473 0.90303 0.90015 0.75142 0.89764 0.89751 0.76992 0.91493 0.89113 0.91135 0.89962 0.90743 0.90722 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.80 37.16 0.33 -0.96 16 2 C 0.08 0.80 1.39 -89.81 -0.12 0.68 16 3 O -0.34 -4.72 9.83 -55.14 -0.54 -5.26 16 4 C 0.04 0.54 5.79 36.01 0.21 0.75 16 5 C 0.51 8.39 7.91 -10.98 -0.09 8.31 16 6 O -0.53 -10.75 16.50 -14.35 -0.24 -10.99 16 7 N -0.71 -11.75 5.53 -61.47 -0.34 -12.09 16 8 C 0.11 2.06 6.15 -5.20 -0.03 2.03 16 9 C 0.43 9.78 7.85 -10.99 -0.09 9.69 16 10 O -0.60 -15.16 15.24 5.54 0.08 -15.07 16 11 N -0.55 -13.58 5.29 -10.96 -0.06 -13.64 16 12 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 13 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -23.87 13.05 55.50 0.72 -23.15 16 16 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.16 -1.37 7.33 -25.83 -0.19 -1.56 16 21 C -0.14 -0.97 7.74 -25.83 -0.20 -1.17 16 22 C -0.12 -1.03 7.50 -25.92 -0.19 -1.23 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.44 7.34 -51.93 -0.38 0.06 16 25 H 0.07 0.50 6.27 -51.93 -0.33 0.17 16 26 H 0.08 0.81 8.06 -51.93 -0.42 0.40 16 27 H 0.08 0.83 6.39 -51.93 -0.33 0.50 16 28 H 0.41 6.49 7.44 -40.82 -0.30 6.18 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 32 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.08 0.47 7.64 -51.93 -0.40 0.07 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.56 8.10 -51.92 -0.42 0.14 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -32.22 323.50 -6.50 -38.73 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.37 Total: 12.49 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -0.62 Total: 8.67 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.33 Total: -48.88 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.69 Total: -31.32 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.22 -6.50 -38.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.654 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds