Wall clock time and date at job start Mon Mar 30 2020 00:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 112.85331 * 2 1 4 4 C 1.42899 * 113.99607 * 50.33149 * 3 2 1 5 5 C 1.50702 * 109.46876 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72354 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.50694 * 109.47550 * 180.02562 * 8 7 5 10 10 O 1.21297 * 119.99707 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00262 * 180.02562 * 9 8 7 12 12 C 1.37096 * 119.99935 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00186 * 0.02562 * 12 11 9 14 14 C 1.38957 * 119.99926 * 179.97438 * 12 11 9 15 15 N 1.31403 * 119.99982 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00036 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46919 * 60.00231 * 16 14 12 18 18 H 1.48496 * 109.47105 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46877 * 300.00526 * 16 14 12 20 20 C 1.53776 * 113.61384 * 131.19909 * 2 1 3 21 21 C 1.53953 * 87.02233 * 89.22753 * 20 2 1 22 22 C 1.53779 * 113.61407 * 228.80474 * 2 1 3 23 23 H 1.09003 * 109.46687 * 69.66073 * 1 2 3 24 24 H 1.08995 * 109.47345 * 189.66747 * 1 2 3 25 25 H 1.08996 * 109.46734 * 309.66972 * 1 2 3 26 26 H 1.09004 * 109.47206 * 60.00168 * 4 3 2 27 27 H 1.08994 * 109.47548 * 299.99825 * 4 3 2 28 28 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 29 29 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 30 30 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 31 31 H 0.96996 * 120.00282 * 0.02562 * 11 9 8 32 32 H 0.97003 * 120.00258 * 180.02562 * 15 14 12 33 33 H 1.08998 * 113.61553 * 203.74712 * 20 2 1 34 34 H 1.09007 * 113.61374 * 334.65222 * 20 2 1 35 35 H 1.09004 * 113.54057 * 270.81696 * 21 20 2 36 36 H 1.09006 * 113.74721 * 139.94456 * 21 20 2 37 37 H 1.09009 * 113.61579 * 25.35106 * 22 2 1 38 38 H 1.08996 * 113.61959 * 156.25176 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0850 1.3168 0.0000 4 6 1.5428 2.1760 1.0049 5 6 2.1966 3.5307 0.9137 6 8 3.0433 3.7400 0.0709 7 7 1.8362 4.5116 1.7649 8 6 2.4675 5.8303 1.6724 9 6 1.8923 6.7379 2.7290 10 8 1.0392 6.3237 3.4853 11 7 2.3257 8.0098 2.8336 12 6 1.8028 8.8352 3.7952 13 1 1.0438 8.4662 4.4691 14 6 2.2500 10.1464 3.9034 15 7 3.1738 10.5952 3.0838 16 14 1.5379 11.2710 5.2141 17 1 1.7964 10.6918 6.5569 18 1 2.1773 12.6079 5.1198 19 1 0.0737 11.4072 5.0072 20 6 2.1460 -0.9281 1.0602 21 6 2.0950 -2.0420 -0.0013 22 6 2.1460 -0.9280 -1.0602 23 1 -0.3633 0.3572 -0.9636 24 1 -0.3634 -1.0130 0.1726 25 1 -0.3632 0.6560 0.7910 26 1 1.7310 1.7476 1.9894 27 1 0.4684 2.2798 0.8532 28 1 1.1590 4.3444 2.4389 29 1 3.5421 5.7303 1.8256 30 1 2.2792 6.2549 0.6864 31 1 3.0077 8.3411 2.2287 32 1 3.4863 11.5104 3.1596 33 1 3.1585 -0.6478 1.3506 34 1 1.4938 -1.1080 1.9149 35 1 1.1594 -2.6013 -0.0008 36 1 2.9737 -2.6870 -0.0033 37 1 1.4939 -1.1079 -1.9151 38 1 3.1585 -0.6478 -1.3507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:08 Heat of formation + Delta-G solvation = -124.440787 kcal Electronic energy + Delta-G solvation = -20136.071791 eV Core-core repulsion = 16785.401470 eV Total energy + Delta-G solvation = -3350.670321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25005 -40.60179 -39.78740 -36.83314 -36.24482 -35.32149 -33.39154 -30.58061 -29.99595 -28.21767 -26.66389 -26.15622 -24.04153 -21.64830 -21.40267 -20.09162 -19.81109 -18.72672 -17.98315 -17.38450 -17.20069 -16.77772 -16.43361 -16.29497 -15.93593 -15.84106 -15.25219 -15.06538 -14.53489 -14.35257 -13.94403 -13.60395 -13.54534 -13.33415 -13.05656 -12.90980 -12.86020 -12.47555 -12.19841 -12.14172 -12.11430 -11.69197 -11.56664 -11.16654 -10.94093 -10.57654 -10.45879 -10.24484 -10.09843 -8.51515 -6.02071 1.37764 1.42644 1.49859 1.53467 1.70564 1.89799 2.28732 2.92340 3.13752 3.15571 3.54567 3.63673 3.73941 3.87635 3.91457 4.14052 4.21216 4.24564 4.40254 4.41665 4.43702 4.61199 4.76210 4.86592 4.88085 5.03075 5.07253 5.14279 5.20626 5.28919 5.37579 5.46982 5.90547 6.17448 6.45143 6.51225 7.02274 7.11830 7.43040 7.92648 8.65181 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.057964 B = 0.002779 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.940688 B =10072.426210 C =10323.684089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.068 3.932 3 O -0.378 6.378 4 C 0.050 3.950 5 C 0.511 3.489 6 O -0.573 6.573 7 N -0.703 5.703 8 C 0.121 3.879 9 C 0.434 3.566 10 O -0.622 6.622 11 N -0.559 5.559 12 C -0.338 4.338 13 H 0.088 0.912 14 C -0.011 4.011 15 N -0.917 5.917 16 Si 0.998 3.002 17 H -0.269 1.269 18 H -0.272 1.272 19 H -0.269 1.269 20 C -0.164 4.164 21 C -0.127 4.127 22 C -0.127 4.127 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.417 0.583 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.399 0.601 32 H 0.280 0.720 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.327 -21.331 -4.820 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 O -0.297 6.297 4 C -0.029 4.029 5 C 0.298 3.702 6 O -0.452 6.452 7 N -0.359 5.359 8 C -0.006 4.006 9 C 0.221 3.779 10 O -0.511 6.511 11 N -0.195 5.195 12 C -0.467 4.467 13 H 0.106 0.894 14 C -0.212 4.212 15 N -0.557 5.557 16 Si 0.821 3.179 17 H -0.194 1.194 18 H -0.197 1.197 19 H -0.194 1.194 20 C -0.201 4.201 21 C -0.164 4.164 22 C -0.164 4.164 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.255 0.745 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.233 0.767 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.042 -21.189 -5.074 22.160 hybrid contribution -0.062 1.054 0.615 1.222 sum -4.104 -20.135 -4.459 21.028 Atomic orbital electron populations 1.22140 0.92025 1.04545 1.03260 1.23509 0.94451 0.80277 0.98858 1.88060 1.64035 1.23349 1.54242 1.22161 0.98999 0.87213 0.94526 1.20923 0.82365 0.86665 0.80219 1.90691 1.34198 1.83071 1.37194 1.45558 1.43377 1.10392 1.36583 1.20771 0.98275 0.83217 0.98368 1.20351 0.86046 0.83567 0.87955 1.90468 1.36864 1.75696 1.48024 1.41849 1.36781 1.09552 1.31279 1.19720 1.21807 0.93113 1.12100 0.89411 1.26155 0.96365 0.98491 1.00172 1.69674 1.29148 1.18559 1.38293 0.84915 0.78421 0.76822 0.77760 1.19406 1.19704 1.19403 1.23621 1.01681 0.96829 0.97997 1.22718 1.03755 0.95418 0.94504 1.23122 1.01555 0.94460 0.97300 0.91586 0.88866 0.90996 0.87925 0.87473 0.74456 0.88893 0.88848 0.76725 0.91041 0.90633 0.89695 0.87967 0.90153 0.89742 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.80 71.98 0.63 -1.49 16 2 C 0.07 1.23 1.39 -10.27 -0.01 1.21 16 3 O -0.38 -10.06 9.83 -129.94 -1.28 -11.33 16 4 C 0.05 1.16 5.79 71.24 0.41 1.57 16 5 C 0.51 16.39 7.91 87.66 0.69 17.08 16 6 O -0.57 -23.27 16.50 16.00 0.26 -23.01 16 7 N -0.70 -22.75 5.53 -466.79 -2.58 -25.33 16 8 C 0.12 4.46 6.15 85.63 0.53 4.99 16 9 C 0.43 19.86 7.85 87.66 0.69 20.55 16 10 O -0.62 -31.56 15.24 -3.08 -0.05 -31.61 16 11 N -0.56 -28.03 5.29 -306.98 -1.62 -29.66 16 12 C -0.34 -18.53 9.68 84.04 0.81 -17.71 16 13 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 14 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 15 N -0.92 -48.77 13.05 21.66 0.28 -48.49 16 16 Si 1.00 41.49 29.55 68.60 2.03 43.52 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 C -0.16 -2.45 7.33 31.18 0.23 -2.22 16 21 C -0.13 -1.48 7.74 31.18 0.24 -1.23 16 22 C -0.13 -2.05 7.50 31.12 0.23 -1.82 16 23 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 0.82 7.34 -2.39 -0.02 0.80 16 25 H 0.07 0.86 6.27 -2.39 -0.01 0.85 16 26 H 0.10 1.88 8.06 -2.38 -0.02 1.86 16 27 H 0.11 1.93 6.39 -2.39 -0.02 1.91 16 28 H 0.42 12.68 7.44 -92.71 -0.69 11.99 16 29 H 0.09 3.29 8.14 -2.39 -0.02 3.28 16 30 H 0.09 3.30 8.14 -2.39 -0.02 3.29 16 31 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 32 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.01 8.10 -2.38 -0.02 0.99 16 35 H 0.10 0.81 7.64 -2.38 -0.02 0.79 16 36 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.08 1.16 8.10 -2.38 -0.02 1.14 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -69.20 323.50 1.64 -67.56 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.33 Total: 37.54 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 4.92 Total: 20.80 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -3.92 Total: -103.48 kcal Atomic # 8 Polarization: -64.89 SS G_CDS: -1.06 Total: -65.95 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -69.20 1.64 -67.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.876 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds