Wall clock time and date at job start Mon Mar 30 2020 00:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00035 * 2 1 4 4 O 1.21588 * 119.99629 * 180.27524 * 3 2 1 5 5 N 1.34773 * 119.99816 * 0.02562 * 3 2 1 6 6 C 1.46505 * 119.99901 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.46885 * 179.97438 * 6 5 3 8 8 H 1.07994 * 120.00426 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99395 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00544 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99389 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47539 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47315 * 119.99977 * 11 9 7 14 14 H 1.48498 * 109.46947 * 239.99648 * 11 9 7 15 15 C 1.46503 * 120.00093 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.36503 * 183.44654 * 15 2 1 17 17 C 1.54473 * 110.40312 * 305.77814 * 15 2 1 18 18 C 1.54369 * 103.04441 * 119.16068 * 17 15 2 19 19 C 1.53004 * 110.32258 * 136.71796 * 18 17 15 20 20 C 1.52996 * 110.32457 * 258.92153 * 18 17 15 21 21 O 1.45950 * 105.06881 * 17.82117 * 18 17 15 22 22 C 1.34555 * 108.40118 * 327.55675 * 21 18 17 23 23 O 1.20830 * 125.94945 * 213.37167 * 22 21 18 24 24 H 1.09003 * 109.46986 * 85.44829 * 1 2 3 25 25 H 1.09004 * 109.46794 * 205.44763 * 1 2 3 26 26 H 1.08996 * 109.47100 * 325.44591 * 1 2 3 27 27 H 0.96993 * 120.00360 * 359.97438 * 5 3 2 28 28 H 1.09002 * 109.46870 * 299.99672 * 6 5 3 29 29 H 1.09006 * 109.47074 * 59.99646 * 6 5 3 30 30 H 0.97001 * 120.00162 * 180.02562 * 10 9 7 31 31 H 1.09000 * 110.69950 * 237.55172 * 17 15 2 32 32 H 1.09003 * 110.70053 * 0.59893 * 17 15 2 33 33 H 1.08995 * 109.46616 * 59.99598 * 19 18 17 34 34 H 1.08997 * 109.47333 * 179.97438 * 19 18 17 35 35 H 1.09005 * 109.47147 * 300.00452 * 19 18 17 36 36 H 1.09004 * 109.47074 * 66.12769 * 20 18 17 37 37 H 1.08992 * 109.47358 * 186.12527 * 20 18 17 38 38 H 1.09003 * 109.47206 * 306.12952 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1671 -0.0051 5 7 1.4650 2.3344 0.0005 6 6 2.1975 3.6031 0.0011 7 6 1.2182 4.7485 0.0010 8 1 0.1564 4.5512 0.0001 9 6 1.6778 6.0484 0.0009 10 7 2.9708 6.2888 0.0015 11 14 0.4639 7.4682 0.0015 12 1 -0.9219 6.9347 0.0013 13 1 0.6747 8.2993 1.2140 14 1 0.6739 8.2995 -1.2110 15 6 2.1975 -1.2687 -0.0006 16 1 3.2706 -1.0872 0.0609 17 6 1.7337 -2.1589 1.1736 18 6 1.1792 -3.4121 0.4630 19 6 1.6443 -4.6801 1.1818 20 6 -0.3490 -3.3603 0.4097 21 8 1.7354 -3.3609 -0.8854 22 6 1.8652 -2.0701 -1.2427 23 8 1.7382 -1.6270 -2.3596 24 1 -0.3633 0.0816 -1.0245 25 1 -0.3633 -0.9280 0.4416 26 1 -0.3633 0.8463 0.5829 27 1 0.4950 2.3344 0.0005 28 1 2.8241 3.6605 0.8912 29 1 2.8242 3.6612 -0.8889 30 1 3.2941 7.2033 0.0018 31 1 2.5755 -2.4203 1.8148 32 1 0.9527 -1.6617 1.7490 33 1 1.2853 -4.6666 2.2109 34 1 1.2450 -5.5554 0.6695 35 1 2.7335 -4.7215 1.1775 36 1 -0.6625 -2.5344 -0.2289 37 1 -0.7304 -4.2976 0.0049 38 1 -0.7428 -3.2118 1.4153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813739815.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:19 Heat of formation + Delta-G solvation = -102.430388 kcal Electronic energy + Delta-G solvation = -21408.005051 eV Core-core repulsion = 18058.289173 eV Total energy + Delta-G solvation = -3349.715879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59429 -39.28619 -37.84156 -35.52350 -34.28282 -33.72919 -32.39890 -30.52481 -28.11550 -27.15251 -26.59676 -24.61778 -22.79579 -21.63128 -20.62435 -19.37450 -18.35186 -16.94895 -16.67198 -16.38361 -15.92991 -15.63096 -15.10995 -14.84917 -14.47085 -14.07458 -13.93356 -13.43192 -13.28467 -13.03126 -12.92974 -12.63778 -12.51463 -12.41040 -12.03185 -11.86575 -11.82717 -11.59940 -11.24067 -10.93467 -10.91983 -10.80588 -10.47160 -10.29867 -9.49668 -9.35919 -8.75282 -8.54882 -7.81275 -6.15710 -4.22405 1.73223 2.95894 3.09871 3.24184 3.31413 3.34439 3.62689 3.88147 4.13779 4.24899 4.30968 4.31306 4.57403 4.75591 4.91364 5.05245 5.12200 5.20582 5.20857 5.26967 5.34569 5.39923 5.56352 5.60507 5.62985 5.69583 5.78260 6.37766 6.59676 6.97717 7.38476 7.45437 7.48804 7.55824 7.79186 7.99718 8.71390 8.84444 9.23190 9.45065 10.94580 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038906 B = 0.003916 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.505579 B = 7148.491518 C = 7299.190858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.623 5.623 3 C 0.699 3.301 4 O -0.594 6.594 5 N -0.722 5.722 6 C 0.265 3.735 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.064 3.936 10 N -0.885 5.885 11 Si 0.904 3.096 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.104 3.896 16 H 0.146 0.854 17 C -0.159 4.159 18 C 0.104 3.896 19 C -0.142 4.142 20 C -0.172 4.172 21 O -0.347 6.347 22 C 0.472 3.528 23 O -0.430 6.430 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.388 0.612 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 -20.799 5.255 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.364 5.364 3 C 0.401 3.599 4 O -0.472 6.472 5 N -0.375 5.375 6 C 0.144 3.856 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.140 4.140 10 N -0.522 5.522 11 Si 0.732 3.268 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.004 4.004 16 H 0.163 0.837 17 C -0.197 4.197 18 C 0.067 3.933 19 C -0.199 4.199 20 C -0.229 4.229 21 O -0.265 6.265 22 C 0.309 3.691 23 O -0.309 6.309 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.222 0.778 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.710 -20.531 4.571 22.078 hybrid contribution -1.070 0.913 -0.026 1.407 sum -7.780 -19.617 4.544 21.588 Atomic orbital electron populations 1.21924 0.80108 1.03261 1.02289 1.46754 1.05819 1.03603 1.80206 1.16024 0.85456 0.80315 0.78150 1.90866 1.11672 1.85894 1.58806 1.45827 1.09759 1.05428 1.76440 1.19047 0.92088 0.76706 0.97773 1.21239 0.92971 0.90664 1.53140 0.91912 1.24943 0.95416 0.98901 0.94728 1.69987 1.12557 1.20726 1.48936 0.86353 0.80889 0.81853 0.77747 1.19662 1.20801 1.20790 1.22062 1.01817 0.84230 0.92311 0.83694 1.23378 1.03771 0.94755 0.97825 1.23013 0.93942 0.97386 0.78944 1.21884 1.02803 0.95163 1.00028 1.22429 0.92989 1.03801 1.03678 1.87343 1.77036 1.27884 1.34212 1.23756 0.72895 0.81946 0.90524 1.90717 1.43164 1.72407 1.24593 0.92464 0.90836 0.90435 0.77824 0.95579 0.95564 0.92487 0.87935 0.87911 0.89954 0.91157 0.90973 0.91413 0.90790 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 9.15 59.84 0.55 1.34 16 2 N -0.62 -9.85 2.80 -179.65 -0.50 -10.35 16 3 C 0.70 14.83 8.28 -86.92 -0.72 14.11 16 4 O -0.59 -14.92 15.71 5.29 0.08 -14.84 16 5 N -0.72 -15.78 5.41 -66.41 -0.36 -16.14 16 6 C 0.26 7.15 5.43 -5.19 -0.03 7.12 16 7 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.88 -26.19 13.29 55.43 0.74 -25.46 16 11 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.10 1.43 3.44 -67.91 -0.23 1.20 16 16 H 0.15 2.24 6.98 -51.93 -0.36 1.87 16 17 C -0.16 -1.40 5.60 -25.24 -0.14 -1.54 16 18 C 0.10 0.85 1.25 -89.90 -0.11 0.74 16 19 C -0.14 -0.80 8.82 37.16 0.33 -0.47 16 20 C -0.17 -1.13 7.97 37.16 0.30 -0.83 16 21 O -0.35 -4.28 10.59 -39.71 -0.42 -4.70 16 22 C 0.47 7.09 7.31 36.40 0.27 7.35 16 23 O -0.43 -8.14 17.98 -18.32 -0.33 -8.47 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.63 3.82 -51.93 -0.20 0.43 16 26 H 0.08 0.86 6.61 -51.93 -0.34 0.51 16 27 H 0.39 7.29 6.15 -40.82 -0.25 7.03 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.10 0.74 7.82 -51.93 -0.41 0.34 16 32 H 0.10 0.79 6.42 -51.93 -0.33 0.46 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.53 5.97 -51.93 -0.31 0.22 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -35.31 313.40 -6.42 -41.73 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.12 Total: 2.05 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -0.21 Total: 15.59 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.13 Total: -51.95 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.67 Total: -28.01 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.31 -6.42 -41.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813739815.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.696 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds