Wall clock time and date at job start Mon Mar 30 2020 00:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00035 * 2 1 4 4 O 1.21588 * 119.99629 * 180.27524 * 3 2 1 5 5 N 1.34773 * 119.99816 * 0.02562 * 3 2 1 6 6 C 1.46505 * 119.99901 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.46885 * 179.97438 * 6 5 3 8 8 H 1.07994 * 120.00426 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99395 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00544 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99389 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47539 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47315 * 119.99977 * 11 9 7 14 14 H 1.48498 * 109.46947 * 239.99648 * 11 9 7 15 15 C 1.46503 * 120.00093 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.36503 * 183.44654 * 15 2 1 17 17 C 1.54473 * 110.40312 * 305.77814 * 15 2 1 18 18 C 1.54369 * 103.04441 * 119.16068 * 17 15 2 19 19 C 1.53004 * 110.32258 * 136.71796 * 18 17 15 20 20 C 1.52996 * 110.32457 * 258.92153 * 18 17 15 21 21 O 1.45950 * 105.06881 * 17.82117 * 18 17 15 22 22 C 1.34555 * 108.40118 * 327.55675 * 21 18 17 23 23 O 1.20830 * 125.94945 * 213.37167 * 22 21 18 24 24 H 1.09003 * 109.46986 * 85.44829 * 1 2 3 25 25 H 1.09004 * 109.46794 * 205.44763 * 1 2 3 26 26 H 1.08996 * 109.47100 * 325.44591 * 1 2 3 27 27 H 0.96993 * 120.00360 * 359.97438 * 5 3 2 28 28 H 1.09002 * 109.46870 * 299.99672 * 6 5 3 29 29 H 1.09006 * 109.47074 * 59.99646 * 6 5 3 30 30 H 0.97001 * 120.00162 * 180.02562 * 10 9 7 31 31 H 1.09000 * 110.69950 * 237.55172 * 17 15 2 32 32 H 1.09003 * 110.70053 * 0.59893 * 17 15 2 33 33 H 1.08995 * 109.46616 * 59.99598 * 19 18 17 34 34 H 1.08997 * 109.47333 * 179.97438 * 19 18 17 35 35 H 1.09005 * 109.47147 * 300.00452 * 19 18 17 36 36 H 1.09004 * 109.47074 * 66.12769 * 20 18 17 37 37 H 1.08992 * 109.47358 * 186.12527 * 20 18 17 38 38 H 1.09003 * 109.47206 * 306.12952 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1671 -0.0051 5 7 1.4650 2.3344 0.0005 6 6 2.1975 3.6031 0.0011 7 6 1.2182 4.7485 0.0010 8 1 0.1564 4.5512 0.0001 9 6 1.6778 6.0484 0.0009 10 7 2.9708 6.2888 0.0015 11 14 0.4639 7.4682 0.0015 12 1 -0.9219 6.9347 0.0013 13 1 0.6747 8.2993 1.2140 14 1 0.6739 8.2995 -1.2110 15 6 2.1975 -1.2687 -0.0006 16 1 3.2706 -1.0872 0.0609 17 6 1.7337 -2.1589 1.1736 18 6 1.1792 -3.4121 0.4630 19 6 1.6443 -4.6801 1.1818 20 6 -0.3490 -3.3603 0.4097 21 8 1.7354 -3.3609 -0.8854 22 6 1.8652 -2.0701 -1.2427 23 8 1.7382 -1.6270 -2.3596 24 1 -0.3633 0.0816 -1.0245 25 1 -0.3633 -0.9280 0.4416 26 1 -0.3633 0.8463 0.5829 27 1 0.4950 2.3344 0.0005 28 1 2.8241 3.6605 0.8912 29 1 2.8242 3.6612 -0.8889 30 1 3.2941 7.2033 0.0018 31 1 2.5755 -2.4203 1.8148 32 1 0.9527 -1.6617 1.7490 33 1 1.2853 -4.6666 2.2109 34 1 1.2450 -5.5554 0.6695 35 1 2.7335 -4.7215 1.1775 36 1 -0.6625 -2.5344 -0.2289 37 1 -0.7304 -4.2976 0.0049 38 1 -0.7428 -3.2118 1.4153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813739815.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:19 Heat of formation + Delta-G solvation = -127.967892 kcal Electronic energy + Delta-G solvation = -21409.112441 eV Core-core repulsion = 18058.289173 eV Total energy + Delta-G solvation = -3350.823268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.65384 -40.87325 -39.02319 -36.91012 -36.23742 -34.66242 -34.27374 -31.66102 -29.20385 -28.55917 -27.65986 -25.70642 -24.66046 -22.80265 -21.71504 -20.87205 -19.88490 -18.20080 -18.11119 -17.81637 -17.26083 -16.92923 -16.66338 -16.36400 -15.63274 -15.23242 -15.12101 -14.88922 -14.44299 -14.26425 -14.04738 -13.81674 -13.77258 -13.44248 -13.13900 -13.04917 -12.86986 -12.75328 -12.63265 -12.47457 -12.20842 -11.95222 -11.77249 -11.48727 -11.45192 -11.28413 -10.82440 -10.12272 -9.56504 -8.28670 -6.45361 0.56346 1.43702 1.45797 1.57292 1.62503 2.00977 2.16771 2.38327 2.80848 3.06501 3.08312 3.31640 3.53345 3.66830 3.94416 4.03156 4.12999 4.42122 4.60565 4.64283 4.71604 4.79057 4.80275 4.89006 4.94388 5.01522 5.20090 5.24848 5.28081 5.31689 5.45644 5.57856 5.67621 5.81336 5.94634 6.21719 6.65408 7.05802 7.24301 7.56769 8.83989 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038906 B = 0.003916 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.505579 B = 7148.491518 C = 7299.190858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.613 5.613 3 C 0.695 3.305 4 O -0.642 6.642 5 N -0.716 5.716 6 C 0.284 3.716 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.004 3.996 10 N -0.931 5.931 11 Si 0.987 3.013 12 H -0.252 1.252 13 H -0.277 1.277 14 H -0.281 1.281 15 C 0.094 3.906 16 H 0.123 0.877 17 C -0.145 4.145 18 C 0.098 3.902 19 C -0.140 4.140 20 C -0.174 4.174 21 O -0.353 6.353 22 C 0.479 3.521 23 O -0.481 6.481 24 H 0.053 0.947 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.405 0.595 28 H -0.008 1.008 29 H -0.018 1.018 30 H 0.269 0.731 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.727 -22.011 6.998 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.352 5.352 3 C 0.396 3.604 4 O -0.524 6.524 5 N -0.371 5.371 6 C 0.161 3.839 7 C -0.592 4.592 8 H 0.102 0.898 9 C -0.195 4.195 10 N -0.569 5.569 11 Si 0.810 3.190 12 H -0.175 1.175 13 H -0.202 1.202 14 H -0.207 1.207 15 C -0.013 4.013 16 H 0.141 0.859 17 C -0.183 4.183 18 C 0.062 3.938 19 C -0.197 4.197 20 C -0.231 4.231 21 O -0.271 6.271 22 C 0.318 3.682 23 O -0.364 6.364 24 H 0.071 0.929 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.242 0.758 28 H 0.010 0.990 29 H 0.000 1.000 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.771 -21.838 6.344 24.751 hybrid contribution -0.099 1.128 -0.548 1.258 sum -9.870 -20.710 5.796 23.662 Atomic orbital electron populations 1.22248 0.77232 1.05958 1.02785 1.46693 1.07506 1.02475 1.78492 1.16210 0.84994 0.81455 0.77719 1.90827 1.14022 1.86887 1.60663 1.45408 1.10326 1.04344 1.76998 1.18474 0.91932 0.79427 0.94088 1.21602 0.93822 0.90810 1.52974 0.89781 1.26070 0.97407 1.02254 0.93798 1.70149 1.15169 1.21689 1.49906 0.85079 0.78796 0.77452 0.77668 1.17541 1.20224 1.20678 1.22310 1.00738 0.83909 0.94325 0.85939 1.23456 1.05186 0.93690 0.95973 1.23509 0.95139 0.98290 0.76821 1.21962 1.02759 0.93665 1.01270 1.22514 0.91362 1.03756 1.05420 1.87348 1.76778 1.26067 1.36879 1.23873 0.71517 0.82845 0.89927 1.90685 1.45665 1.73669 1.26424 0.92880 0.86932 0.89240 0.75811 0.99050 0.99994 0.92209 0.85927 0.85829 0.86975 0.90704 0.91290 0.92760 0.90035 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.27 9.15 127.77 1.17 2.44 16 2 N -0.61 -19.18 2.80 -840.54 -2.35 -21.53 16 3 C 0.70 30.37 8.28 179.06 1.48 31.85 16 4 O -0.64 -34.06 15.71 -3.99 -0.06 -34.12 16 5 N -0.72 -32.00 5.41 -482.29 -2.61 -34.61 16 6 C 0.28 16.03 5.43 85.63 0.46 16.50 16 7 C -0.55 -30.45 9.28 25.60 0.24 -30.22 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.00 0.24 5.46 84.66 0.46 0.70 16 10 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 11 Si 0.99 42.39 29.54 68.60 2.03 44.42 16 12 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 13 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.09 2.57 3.44 45.00 0.15 2.73 16 16 H 0.12 3.95 6.98 -2.39 -0.02 3.93 16 17 C -0.15 -2.13 5.60 31.56 0.18 -1.95 16 18 C 0.10 1.30 1.25 -10.33 -0.01 1.28 16 19 C -0.14 -1.04 8.82 71.98 0.64 -0.41 16 20 C -0.17 -1.59 7.97 71.98 0.57 -1.02 16 21 O -0.35 -8.32 10.59 -55.01 -0.58 -8.90 16 22 C 0.48 14.47 7.31 71.49 0.52 14.99 16 23 O -0.48 -18.90 17.98 21.54 0.39 -18.51 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.11 1.53 3.82 -2.38 -0.01 1.52 16 26 H 0.09 1.74 6.61 -2.39 -0.02 1.72 16 27 H 0.40 14.97 6.15 -92.71 -0.57 14.40 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 30 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.12 1.38 7.82 -2.39 -0.02 1.36 16 32 H 0.12 1.35 6.42 -2.39 -0.02 1.34 16 33 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.05 0.67 5.97 -2.39 -0.01 0.65 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.11 0.36 8.09 -2.39 -0.02 0.34 16 Total: -1.00 -82.20 313.40 3.47 -78.73 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.51 Total: 13.91 kcal Atomic # 6 Polarization: 31.04 SS G_CDS: 5.87 Total: 36.91 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -4.68 Total: -112.43 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -0.26 Total: -61.54 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -82.20 3.47 -78.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813739815.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.238 kcal (2) G-P(sol) polarization free energy of solvation -82.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds