Wall clock time and date at job start Mon Mar 30 2020 02:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.52390 * 2 1 4 4 C 1.53116 * 109.52215 * 239.86553 * 2 1 3 5 5 C 1.53039 * 109.28281 * 297.69065 * 4 2 1 6 6 N 1.46844 * 109.51840 * 300.82033 * 5 4 2 7 7 C 1.46904 * 110.99518 * 185.83808 * 6 5 4 8 8 C 1.50703 * 109.47094 * 66.04622 * 7 6 5 9 9 O 1.21288 * 120.00019 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99735 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99872 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99705 * 0.02562 * 11 10 8 13 13 C 1.38942 * 120.00084 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00191 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99853 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00033 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00027 * 15 13 11 19 19 C 1.46850 * 111.20227 * 61.74327 * 6 5 4 20 20 C 1.53041 * 109.52036 * 298.25750 * 19 6 5 21 21 H 1.08997 * 109.53292 * 299.21641 * 20 19 6 22 22 C 1.50701 * 109.50223 * 179.11998 * 20 19 6 23 23 O 1.20827 * 120.00015 * 240.19819 * 22 20 19 24 24 O 1.34232 * 119.99958 * 60.19056 * 22 20 19 25 25 H 1.08996 * 109.47364 * 180.12905 * 1 2 3 26 26 H 1.08999 * 109.46785 * 300.13256 * 1 2 3 27 27 H 1.09000 * 109.46830 * 60.13152 * 1 2 3 28 28 H 1.08998 * 109.50434 * 177.74554 * 4 2 1 29 29 H 1.09009 * 109.53413 * 57.65254 * 4 2 1 30 30 H 1.08994 * 109.46309 * 180.80561 * 5 4 2 31 31 H 1.08998 * 109.45978 * 60.83516 * 5 4 2 32 32 H 1.09002 * 109.47117 * 306.04318 * 7 6 5 33 33 H 1.08998 * 109.47117 * 186.04435 * 7 6 5 34 34 H 0.96998 * 120.00302 * 0.02562 * 10 8 7 35 35 H 0.97009 * 120.00103 * 0.02562 * 14 13 11 36 36 H 1.09002 * 109.46088 * 58.26589 * 19 6 5 37 37 H 1.08992 * 109.46547 * 178.23914 * 19 6 5 38 38 H 0.96700 * 116.99757 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7245 -1.2481 5 6 1.5779 -2.1825 -1.2119 6 7 2.0950 -2.8319 -0.0006 7 6 1.7861 -4.2681 -0.0006 8 6 2.5380 -4.9436 -1.1184 9 8 3.2597 -4.2926 -1.8440 10 7 2.4083 -6.2711 -1.3119 11 6 3.0919 -6.8856 -2.3291 12 1 3.7346 -6.3059 -2.9751 13 6 2.9579 -8.2540 -2.5288 14 7 2.1756 -8.9593 -1.7431 15 14 3.8899 -9.0914 -3.9143 16 1 5.2137 -9.5449 -3.4172 17 1 4.0828 -8.1323 -5.0316 18 1 3.1142 -10.2626 -4.3958 19 6 1.5792 -2.1827 1.2114 20 6 2.0430 -0.7247 1.2475 21 1 3.1322 -0.6892 1.2669 22 6 1.4956 -0.0530 2.4804 23 8 0.7695 0.9069 2.3735 24 8 1.8144 -0.5211 3.6974 25 1 -0.3634 -1.0276 0.0023 26 1 -0.3633 0.5159 0.8888 27 1 -0.3633 0.5118 -0.8912 28 1 3.1310 -0.6895 -1.2683 29 1 1.6455 -0.2386 -2.1398 30 1 1.9527 -2.7047 -2.0921 31 1 0.4885 -2.2169 -1.2057 32 1 0.7150 -4.4093 -0.1458 33 1 2.0841 -4.7038 0.9530 34 1 1.8308 -6.7917 -0.7319 35 1 1.6913 -8.5244 -1.0238 36 1 0.4897 -2.2172 1.2062 37 1 1.9548 -2.7052 2.0911 38 1 1.4388 -0.0575 4.4584 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822087903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:06 Heat of formation + Delta-G solvation = -124.216148 kcal Electronic energy + Delta-G solvation = -21335.603627 eV Core-core repulsion = 17984.943047 eV Total energy + Delta-G solvation = -3350.660580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99279 -39.17714 -37.86465 -36.37735 -34.54236 -33.75636 -31.36901 -31.07960 -28.53862 -26.73077 -24.41232 -24.23561 -22.69529 -21.61946 -19.59666 -18.63380 -18.20561 -17.88770 -16.84226 -16.48471 -16.03162 -15.36822 -14.96780 -14.81587 -14.34027 -13.99821 -13.82996 -13.67260 -13.46901 -13.41347 -12.57525 -12.35148 -12.14548 -11.76313 -11.60397 -11.42261 -11.27304 -11.19252 -10.95120 -10.76050 -10.66877 -10.37872 -10.21806 -10.11150 -9.85395 -9.49590 -8.50024 -8.04330 -7.92054 -6.75028 -3.88241 1.97984 2.82985 3.31178 3.35409 3.54447 3.83505 3.90422 4.30225 4.44147 4.65831 4.84683 4.91072 5.11725 5.19370 5.24105 5.30572 5.43271 5.45322 5.52500 5.64506 5.73270 5.74109 5.82535 5.87512 6.00961 6.01408 6.09647 6.17817 6.33626 6.44501 6.54022 7.16806 7.29521 7.70518 7.81575 8.08649 8.60616 8.80706 9.48027 9.88588 10.68495 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039739 B = 0.003858 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.433425 B = 7256.671641 C = 7618.596003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.076 4.076 3 H 0.077 0.923 4 C -0.107 4.107 5 C 0.047 3.953 6 N -0.511 5.511 7 C 0.047 3.953 8 C 0.447 3.553 9 O -0.570 6.570 10 N -0.576 5.576 11 C -0.381 4.381 12 H 0.100 0.900 13 C -0.009 4.009 14 N -0.902 5.902 15 Si 1.093 2.907 16 H -0.285 1.285 17 H -0.284 1.284 18 H -0.281 1.281 19 C 0.064 3.936 20 C -0.072 4.072 21 H 0.119 0.881 22 C 0.486 3.514 23 O -0.511 6.511 24 O -0.514 6.514 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.375 0.625 35 H 0.261 0.739 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.712 14.609 8.333 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.094 4.094 3 H 0.095 0.905 4 C -0.145 4.145 5 C -0.080 4.080 6 N -0.236 5.236 7 C -0.085 4.085 8 C 0.233 3.767 9 O -0.453 6.453 10 N -0.215 5.215 11 C -0.510 4.510 12 H 0.117 0.883 13 C -0.212 4.212 14 N -0.542 5.542 15 Si 0.919 3.081 16 H -0.211 1.211 17 H -0.209 1.209 18 H -0.207 1.207 19 C -0.064 4.064 20 C -0.091 4.091 21 H 0.137 0.863 22 C 0.329 3.671 23 O -0.399 6.399 24 O -0.326 6.326 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.208 0.792 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -2.465 13.667 6.703 15.421 hybrid contribution -1.769 1.396 1.794 2.880 sum -4.234 15.063 8.496 17.805 Atomic orbital electron populations 1.22238 0.94869 1.01918 1.03321 1.21054 0.96580 0.99023 0.92792 0.90486 1.21596 1.01991 0.94654 0.96270 1.22347 0.96267 0.94761 0.94620 1.61464 1.59491 1.01348 1.01259 1.21839 0.98123 0.88481 1.00026 1.19619 0.86750 0.82739 0.87625 1.90491 1.42009 1.63781 1.49028 1.41946 1.42517 1.06678 1.30327 1.20559 1.26356 0.94258 1.09866 0.88261 1.26491 0.98598 0.93141 1.02948 1.70873 1.27235 1.38252 1.17793 0.83095 0.75387 0.75532 0.74037 1.21107 1.20939 1.20693 1.22002 0.97574 0.92061 0.94766 1.21119 1.03226 0.95768 0.89021 0.86320 1.23579 0.77246 0.81627 0.84691 1.90634 1.34901 1.27394 1.87010 1.84591 1.70831 1.60230 1.16911 0.92944 0.90237 0.92635 0.90588 0.91055 0.87696 0.95487 0.93476 0.89247 0.79197 0.92745 0.94381 0.89613 0.73445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 8.26 37.16 0.31 -1.64 16 2 C -0.08 -0.89 2.42 -90.50 -0.22 -1.11 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.40 5.60 -26.65 -0.15 -1.55 16 5 C 0.05 0.75 4.86 -3.83 -0.02 0.73 16 6 N -0.51 -8.19 4.39 -236.11 -1.04 -9.23 16 7 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 8 C 0.45 10.33 7.46 -10.98 -0.08 10.25 16 9 O -0.57 -15.05 13.92 5.55 0.08 -14.97 16 10 N -0.58 -14.30 5.28 -10.96 -0.06 -14.36 16 11 C -0.38 -10.60 9.68 -14.94 -0.14 -10.74 16 12 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 13 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 14 N -0.90 -25.13 13.68 55.50 0.76 -24.38 16 15 Si 1.09 24.17 29.92 -169.99 -5.09 19.09 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.06 0.82 4.43 -3.83 -0.02 0.80 16 20 C -0.07 -0.83 2.58 -91.69 -0.24 -1.07 16 21 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 22 C 0.49 5.33 7.34 36.01 0.26 5.60 16 23 O -0.51 -6.63 14.28 -18.75 -0.27 -6.90 16 24 O -0.51 -4.45 13.35 -39.26 -0.52 -4.97 16 25 H 0.05 0.63 4.93 -51.93 -0.26 0.38 16 26 H 0.08 1.00 5.34 -51.93 -0.28 0.72 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 30 H 0.10 2.04 5.80 -51.93 -0.30 1.74 16 31 H 0.03 0.40 6.52 -51.93 -0.34 0.06 16 32 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.09 1.38 7.98 -51.93 -0.41 0.97 16 34 H 0.38 8.61 6.73 -40.82 -0.27 8.33 16 35 H 0.26 6.99 6.78 -40.82 -0.28 6.71 16 36 H 0.04 0.47 6.51 -51.93 -0.34 0.13 16 37 H 0.09 1.02 8.01 -51.93 -0.42 0.61 16 38 H 0.41 1.72 9.10 45.56 0.41 2.14 16 LS Contribution 303.40 15.07 4.57 4.57 Total: -1.00 -33.12 303.40 -6.17 -39.28 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.18 Total: 10.17 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.42 Total: 1.69 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.34 Total: -47.97 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.71 Total: -26.84 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.09 Total: 19.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.12 -6.17 -39.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822087903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.934 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds