Wall clock time and date at job start Mon Mar 30 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.52136 * 2 1 4 4 C 1.53116 * 109.52162 * 120.12940 * 2 1 3 5 5 C 1.53041 * 109.27614 * 177.55725 * 4 2 1 6 6 N 1.46850 * 109.52467 * 300.81983 * 5 4 2 7 7 C 1.46899 * 111.00051 * 185.83888 * 6 5 4 8 8 C 1.50702 * 109.47217 * 293.95488 * 7 6 5 9 9 O 1.21297 * 119.99791 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00304 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00311 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99638 * 359.97438 * 11 10 8 13 13 C 1.38942 * 120.00041 * 179.97438 * 11 10 8 14 14 N 1.31417 * 120.00102 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 120.00054 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47102 * 90.00323 * 15 13 11 17 17 H 1.48499 * 109.47082 * 210.00042 * 15 13 11 18 18 H 1.48490 * 109.46973 * 329.99844 * 15 13 11 19 19 C 1.46850 * 111.19678 * 61.74156 * 6 5 4 20 20 C 1.53042 * 109.57373 * 298.29100 * 19 6 5 21 21 H 1.08998 * 109.45612 * 299.17163 * 20 19 6 22 22 C 1.50704 * 109.55395 * 179.05357 * 20 19 6 23 23 O 1.20826 * 119.99884 * 240.16143 * 22 20 19 24 24 O 1.34229 * 119.99749 * 60.17092 * 22 20 19 25 25 H 1.09001 * 109.47002 * 299.99540 * 1 2 3 26 26 H 1.08993 * 109.46955 * 59.99977 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.50611 * 297.49543 * 4 2 1 29 29 H 1.08997 * 109.50462 * 57.61903 * 4 2 1 30 30 H 1.08996 * 109.46234 * 60.83761 * 5 4 2 31 31 H 1.09003 * 109.46459 * 180.81822 * 5 4 2 32 32 H 1.08999 * 109.47236 * 53.95523 * 7 6 5 33 33 H 1.08999 * 109.46865 * 173.95911 * 7 6 5 34 34 H 0.97003 * 119.99708 * 0.02562 * 10 8 7 35 35 H 0.97001 * 119.99814 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.46320 * 58.27396 * 19 6 5 37 37 H 1.08991 * 109.46188 * 178.25435 * 19 6 5 38 38 H 0.96707 * 116.99641 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 1.2482 5 6 3.5709 -0.7746 1.2120 6 7 4.0103 -1.4790 0.0007 7 6 5.4671 -1.6679 0.0007 8 6 6.1475 -0.3268 -0.0976 9 8 5.4841 0.6867 -0.1610 10 7 7.4931 -0.2535 -0.1151 11 6 8.1122 0.9665 -0.2041 12 1 7.5215 1.8689 -0.2606 13 6 9.4994 1.0420 -0.2216 14 7 10.0928 2.2115 -0.3074 15 14 10.5212 -0.5188 -0.1233 16 1 10.7795 -1.0285 -1.4939 17 1 11.8131 -0.2233 0.5467 18 1 9.7831 -1.5452 0.6557 19 6 3.5708 -0.7759 -1.2113 20 6 2.0417 -0.7243 -1.2482 21 1 1.6446 -1.7392 -1.2685 22 6 1.5916 0.0176 -2.4804 23 8 0.9294 1.0224 -2.3723 24 8 1.9262 -0.4381 -3.6978 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7163 -0.1879 2.1394 29 1 1.6447 -1.7393 1.2683 30 1 3.9675 0.2406 1.2058 31 1 3.9379 -1.3025 2.0921 32 1 5.7694 -2.1618 0.9242 33 1 5.7536 -2.2840 -0.8516 34 1 8.0237 -1.0641 -0.0648 35 1 11.0613 2.2642 -0.3193 36 1 3.9674 0.2394 -1.2062 37 1 3.9376 -1.3046 -2.0910 38 1 1.6141 0.0713 -4.4583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822087905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:12 Heat of formation + Delta-G solvation = -124.239962 kcal Electronic energy + Delta-G solvation = -21647.354677 eV Core-core repulsion = 18296.693064 eV Total energy + Delta-G solvation = -3350.661613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69210 -39.30912 -37.56028 -36.12023 -34.46551 -33.62006 -31.78120 -31.17632 -29.10442 -26.38039 -24.47236 -23.81693 -22.07590 -21.21672 -19.56644 -19.47431 -18.32113 -17.95447 -16.69036 -16.15496 -15.75462 -15.23210 -14.75793 -14.60411 -14.41626 -13.98474 -13.76996 -13.45548 -13.38002 -12.85369 -12.52044 -12.27409 -12.17023 -12.01418 -11.63963 -11.38785 -11.32082 -11.23858 -11.03106 -10.66815 -10.56554 -10.54472 -10.23779 -10.06774 -9.96351 -9.57052 -9.36652 -8.24940 -7.56677 -6.38966 -3.90469 2.25290 2.97799 3.02323 3.09032 3.11028 3.60415 4.03794 4.20791 4.60131 4.64319 4.91839 4.98571 5.13472 5.28189 5.47612 5.49607 5.56329 5.64632 5.70854 5.77842 5.81128 5.86060 5.87316 5.98217 6.15600 6.19502 6.30486 6.35389 6.47471 6.57816 6.65923 7.19277 7.29715 7.48696 7.95279 8.07213 8.49604 8.86534 9.34102 9.72023 10.73762 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.004776 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.952392 B = 5861.383462 C = 6193.415755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.076 4.076 3 H 0.081 0.919 4 C -0.105 4.105 5 C 0.036 3.964 6 N -0.510 5.510 7 C 0.039 3.961 8 C 0.413 3.587 9 O -0.576 6.576 10 N -0.582 5.582 11 C -0.309 4.309 12 H 0.119 0.881 13 C 0.043 3.957 14 N -0.878 5.878 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.268 1.268 19 C 0.041 3.959 20 C -0.068 4.068 21 H 0.109 0.891 22 C 0.488 3.512 23 O -0.513 6.513 24 O -0.516 6.516 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.372 0.628 35 H 0.274 0.726 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.724 -10.743 -0.894 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.095 4.095 3 H 0.099 0.901 4 C -0.142 4.142 5 C -0.092 4.092 6 N -0.233 5.233 7 C -0.093 4.093 8 C 0.199 3.801 9 O -0.461 6.461 10 N -0.220 5.220 11 C -0.438 4.438 12 H 0.136 0.864 13 C -0.161 4.161 14 N -0.517 5.517 15 Si 0.706 3.294 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.194 1.194 19 C -0.086 4.086 20 C -0.087 4.087 21 H 0.127 0.873 22 C 0.330 3.670 23 O -0.401 6.401 24 O -0.327 6.327 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.204 0.796 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -14.221 -10.353 -0.567 17.600 hybrid contribution 1.285 -0.012 -0.479 1.372 sum -12.936 -10.365 -1.046 16.610 Atomic orbital electron populations 1.22014 0.94896 1.01366 1.02974 1.21051 0.95766 1.00105 0.92585 0.90099 1.21598 0.95337 1.00503 0.96808 1.22315 0.94879 0.99972 0.92042 1.62410 1.09906 1.48558 1.02434 1.22095 0.87782 0.95653 1.03730 1.21060 0.82893 0.91573 0.84572 1.90441 1.63209 1.37166 1.55323 1.42403 1.05876 1.08555 1.65142 1.19453 0.90598 0.85776 1.47927 0.86351 1.25082 0.96515 0.97126 0.97342 1.69629 1.10360 1.23192 1.48510 0.86659 0.80896 0.82819 0.78978 1.19516 1.20105 1.19365 1.22345 0.90878 1.02293 0.93131 1.21109 0.98545 1.00131 0.88953 0.87349 1.23546 0.75867 0.82951 0.84656 1.90657 1.37048 1.25247 1.87127 1.84572 1.73556 1.57614 1.16947 0.92641 0.91003 0.93249 0.91214 0.91467 0.91129 0.91323 0.88965 0.88976 0.79552 0.91504 0.89065 0.90541 0.73564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.91 37.16 0.33 -1.49 16 2 C -0.08 -1.03 1.92 -90.49 -0.17 -1.20 16 3 H 0.08 1.30 8.04 -51.93 -0.42 0.89 16 4 C -0.10 -1.30 5.38 -26.65 -0.14 -1.45 16 5 C 0.04 0.54 5.09 -3.83 -0.02 0.52 16 6 N -0.51 -7.76 4.86 -236.11 -1.15 -8.91 16 7 C 0.04 0.62 5.86 -4.98 -0.03 0.59 16 8 C 0.41 8.84 7.20 -10.99 -0.08 8.76 16 9 O -0.58 -14.28 11.20 5.54 0.06 -14.22 16 10 N -0.58 -13.36 5.09 -10.96 -0.06 -13.42 16 11 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 12 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 13 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 14 N -0.88 -25.30 13.96 55.50 0.77 -24.52 16 15 Si 0.88 18.95 27.74 -169.99 -4.71 14.24 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.27 -5.23 6.52 56.52 0.37 -4.87 16 19 C 0.04 0.66 4.19 -3.83 -0.02 0.64 16 20 C -0.07 -0.92 2.30 -91.69 -0.21 -1.13 16 21 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 22 C 0.49 6.78 7.35 36.01 0.26 7.04 16 23 O -0.51 -8.27 14.59 -18.75 -0.27 -8.54 16 24 O -0.52 -5.88 13.35 -39.26 -0.52 -6.41 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.95 5.75 -51.93 -0.30 0.65 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.33 6.00 -51.93 -0.31 1.02 16 31 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 32 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.09 1.82 5.36 -51.93 -0.28 1.54 16 37 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 38 H 0.41 2.86 9.10 45.56 0.41 3.28 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -32.42 304.18 -6.10 -38.52 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -4.48 Total: 14.02 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.32 Total: 4.66 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.43 Total: -46.85 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.74 Total: -29.17 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.42 -6.10 -38.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822087905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.724 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds