Wall clock time and date at job start Mon Mar 30 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.52136 * 2 1 4 4 C 1.53116 * 109.52162 * 120.12940 * 2 1 3 5 5 C 1.53041 * 109.27614 * 177.55725 * 4 2 1 6 6 N 1.46850 * 109.52467 * 300.81983 * 5 4 2 7 7 C 1.46899 * 111.00051 * 185.83888 * 6 5 4 8 8 C 1.50702 * 109.47217 * 293.95488 * 7 6 5 9 9 O 1.21297 * 119.99791 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00304 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00311 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99638 * 359.97438 * 11 10 8 13 13 C 1.38942 * 120.00041 * 179.97438 * 11 10 8 14 14 N 1.31417 * 120.00102 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 120.00054 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47102 * 90.00323 * 15 13 11 17 17 H 1.48499 * 109.47082 * 210.00042 * 15 13 11 18 18 H 1.48490 * 109.46973 * 329.99844 * 15 13 11 19 19 C 1.46850 * 111.19678 * 61.74156 * 6 5 4 20 20 C 1.53042 * 109.57373 * 298.29100 * 19 6 5 21 21 H 1.08998 * 109.45612 * 299.17163 * 20 19 6 22 22 C 1.50704 * 109.55395 * 179.05357 * 20 19 6 23 23 O 1.20826 * 119.99884 * 240.16143 * 22 20 19 24 24 O 1.34229 * 119.99749 * 60.17092 * 22 20 19 25 25 H 1.09001 * 109.47002 * 299.99540 * 1 2 3 26 26 H 1.08993 * 109.46955 * 59.99977 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.50611 * 297.49543 * 4 2 1 29 29 H 1.08997 * 109.50462 * 57.61903 * 4 2 1 30 30 H 1.08996 * 109.46234 * 60.83761 * 5 4 2 31 31 H 1.09003 * 109.46459 * 180.81822 * 5 4 2 32 32 H 1.08999 * 109.47236 * 53.95523 * 7 6 5 33 33 H 1.08999 * 109.46865 * 173.95911 * 7 6 5 34 34 H 0.97003 * 119.99708 * 0.02562 * 10 8 7 35 35 H 0.97001 * 119.99814 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.46320 * 58.27396 * 19 6 5 37 37 H 1.08991 * 109.46188 * 178.25435 * 19 6 5 38 38 H 0.96707 * 116.99641 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 1.2482 5 6 3.5709 -0.7746 1.2120 6 7 4.0103 -1.4790 0.0007 7 6 5.4671 -1.6679 0.0007 8 6 6.1475 -0.3268 -0.0976 9 8 5.4841 0.6867 -0.1610 10 7 7.4931 -0.2535 -0.1151 11 6 8.1122 0.9665 -0.2041 12 1 7.5215 1.8689 -0.2606 13 6 9.4994 1.0420 -0.2216 14 7 10.0928 2.2115 -0.3074 15 14 10.5212 -0.5188 -0.1233 16 1 10.7795 -1.0285 -1.4939 17 1 11.8131 -0.2233 0.5467 18 1 9.7831 -1.5452 0.6557 19 6 3.5708 -0.7759 -1.2113 20 6 2.0417 -0.7243 -1.2482 21 1 1.6446 -1.7392 -1.2685 22 6 1.5916 0.0176 -2.4804 23 8 0.9294 1.0224 -2.3723 24 8 1.9262 -0.4381 -3.6978 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7163 -0.1879 2.1394 29 1 1.6447 -1.7393 1.2683 30 1 3.9675 0.2406 1.2058 31 1 3.9379 -1.3025 2.0921 32 1 5.7694 -2.1618 0.9242 33 1 5.7536 -2.2840 -0.8516 34 1 8.0237 -1.0641 -0.0648 35 1 11.0613 2.2642 -0.3193 36 1 3.9674 0.2394 -1.2062 37 1 3.9376 -1.3046 -2.0910 38 1 1.6141 0.0713 -4.4583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822087905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:12 Heat of formation + Delta-G solvation = -150.932345 kcal Electronic energy + Delta-G solvation = -21648.512145 eV Core-core repulsion = 18296.693064 eV Total energy + Delta-G solvation = -3351.819081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.84747 -40.78419 -38.95194 -37.21478 -36.14407 -35.09037 -33.79213 -32.31517 -30.34427 -27.85300 -25.97087 -25.17094 -23.18093 -22.44957 -21.31339 -20.72575 -20.11781 -19.02597 -17.82998 -17.82134 -16.97756 -16.86339 -16.18357 -15.94610 -15.70405 -15.37058 -15.08650 -15.06360 -14.60556 -14.47738 -13.94100 -13.66023 -13.29204 -13.23621 -13.00994 -12.75909 -12.46887 -12.44470 -12.34910 -12.28513 -12.00769 -11.80120 -11.64763 -11.39176 -11.32709 -11.06388 -11.02752 -10.23547 -9.07415 -8.43863 -6.04650 1.14754 1.29896 1.34832 1.44272 1.90892 2.11006 2.21825 2.96045 2.98324 3.13522 3.56281 3.80228 3.90926 4.15675 4.20998 4.36848 4.45363 4.47599 4.52146 4.65545 4.69607 4.76535 4.82166 4.88943 5.04456 5.12514 5.18290 5.20829 5.34374 5.47605 5.51265 5.66679 5.88022 5.98039 6.03029 6.55834 6.86501 6.98169 7.37225 7.94138 8.73863 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.004776 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.952392 B = 5861.383462 C = 6193.415755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 H 0.039 0.961 4 C -0.096 4.096 5 C 0.034 3.966 6 N -0.492 5.492 7 C 0.046 3.954 8 C 0.415 3.585 9 O -0.615 6.615 10 N -0.587 5.587 11 C -0.329 4.329 12 H 0.051 0.949 13 C -0.016 4.016 14 N -0.936 5.936 15 Si 0.966 3.034 16 H -0.257 1.257 17 H -0.277 1.277 18 H -0.228 1.228 19 C 0.046 3.954 20 C -0.063 4.063 21 H 0.139 0.861 22 C 0.488 3.512 23 O -0.542 6.542 24 O -0.510 6.510 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.023 0.977 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.390 0.610 35 H 0.279 0.721 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.316 -15.363 -0.484 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.057 0.943 4 C -0.133 4.133 5 C -0.094 4.094 6 N -0.214 5.214 7 C -0.086 4.086 8 C 0.202 3.798 9 O -0.501 6.501 10 N -0.228 5.228 11 C -0.458 4.458 12 H 0.069 0.931 13 C -0.214 4.214 14 N -0.576 5.576 15 Si 0.786 3.214 16 H -0.181 1.181 17 H -0.202 1.202 18 H -0.151 1.151 19 C -0.082 4.082 20 C -0.082 4.082 21 H 0.157 0.843 22 C 0.331 3.669 23 O -0.432 6.432 24 O -0.323 6.323 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.041 0.959 31 H 0.107 0.893 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.226 0.774 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -14.850 -14.994 -0.175 21.104 hybrid contribution 1.338 1.552 -0.663 2.154 sum -13.512 -13.441 -0.838 19.077 Atomic orbital electron populations 1.21928 0.93180 1.02792 1.02526 1.21025 0.97130 0.98018 0.93444 0.94281 1.21574 0.93208 1.01984 0.96557 1.22358 0.96846 0.97508 0.92722 1.62530 1.09308 1.47444 1.02132 1.22346 0.87263 0.92065 1.06905 1.22432 0.82320 0.93575 0.81442 1.90482 1.64117 1.39723 1.55756 1.42240 1.06575 1.07440 1.66562 1.18988 0.90984 0.85865 1.49996 0.93078 1.26167 0.97432 1.01875 0.95944 1.69819 1.11034 1.26699 1.50064 0.85351 0.78269 0.77757 0.80067 1.18139 1.20192 1.15069 1.22198 0.92591 0.99552 0.93905 1.21112 0.96730 1.01579 0.88826 0.84332 1.23664 0.75265 0.82459 0.85495 1.90656 1.38529 1.26418 1.87643 1.84518 1.73142 1.57696 1.16982 0.91883 0.92738 0.90746 0.90157 0.88675 0.95897 0.89340 0.85526 0.85686 0.77390 0.91166 0.94012 0.89602 0.71360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.91 71.98 0.64 -2.56 16 2 C -0.08 -2.03 1.92 -10.71 -0.02 -2.05 16 3 H 0.04 1.34 8.04 -2.39 -0.02 1.32 16 4 C -0.10 -2.16 5.38 30.65 0.16 -2.00 16 5 C 0.03 0.96 5.09 86.33 0.44 1.40 16 6 N -0.49 -13.72 4.86 -900.91 -4.38 -18.10 16 7 C 0.05 1.30 5.86 85.56 0.50 1.80 16 8 C 0.41 17.76 7.20 87.66 0.63 18.39 16 9 O -0.61 -32.22 11.20 -3.08 -0.03 -32.25 16 10 N -0.59 -26.85 5.09 -306.99 -1.56 -28.41 16 11 C -0.33 -19.07 10.16 84.04 0.85 -18.21 16 12 H 0.05 3.57 7.39 -2.91 -0.02 3.54 16 13 C -0.02 -0.86 5.50 84.92 0.47 -0.39 16 14 N -0.94 -56.45 13.96 21.66 0.30 -56.15 16 15 Si 0.97 38.18 27.74 68.60 1.90 40.08 16 16 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 17 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 19 C 0.05 1.41 4.19 86.33 0.36 1.77 16 20 C -0.06 -1.61 2.30 -11.48 -0.03 -1.64 16 21 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 22 C 0.49 13.30 7.35 71.24 0.52 13.82 16 23 O -0.54 -17.79 14.59 21.96 0.32 -17.47 16 24 O -0.51 -10.92 13.35 -51.41 -0.69 -11.61 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.40 5.75 -2.39 -0.01 1.39 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.02 0.89 6.00 -2.39 -0.01 0.87 16 31 H 0.09 2.18 8.06 -2.39 -0.02 2.16 16 32 H 0.13 2.85 8.06 -2.39 -0.02 2.83 16 33 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16 35 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.04 1.75 5.36 -2.39 -0.01 1.73 16 37 H 0.09 2.45 8.12 -2.39 -0.02 2.43 16 38 H 0.43 5.44 9.10 -74.05 -0.67 4.77 16 Total: -1.00 -78.65 304.18 0.23 -78.42 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.17 Total: 35.15 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 4.54 Total: 10.33 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -5.64 Total: -102.66 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -0.40 Total: -61.33 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.08 kcal Total: -78.65 0.23 -78.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822087905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.511 kcal (2) G-P(sol) polarization free energy of solvation -78.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds