Wall clock time and date at job start Mon Mar 30 2020 02:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.57733 * 2 1 4 4 C 1.53113 * 109.52446 * 239.83362 * 2 1 3 5 5 C 1.53035 * 109.27991 * 182.44309 * 4 2 1 6 6 N 1.46846 * 109.52468 * 59.18062 * 5 4 2 7 7 C 1.46902 * 111.00030 * 174.16020 * 6 5 4 8 8 C 1.50703 * 109.46924 * 294.21058 * 7 6 5 9 9 O 1.21290 * 120.00285 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99541 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99649 * 179.97438 * 10 8 7 12 12 H 1.08003 * 120.00266 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00025 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00069 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99709 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99702 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99882 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99875 * 15 13 11 19 19 C 1.46842 * 111.19935 * 298.26003 * 6 5 4 20 20 C 1.53037 * 109.52374 * 61.73806 * 19 6 5 21 21 H 1.09001 * 109.50388 * 60.76872 * 20 19 6 22 22 C 1.50699 * 109.50403 * 180.88347 * 20 19 6 23 23 O 1.20830 * 120.00652 * 120.00155 * 22 20 19 24 24 O 1.34234 * 119.99809 * 299.99798 * 22 20 19 25 25 H 1.09005 * 109.47175 * 299.84772 * 1 2 3 26 26 H 1.09003 * 109.47019 * 59.84507 * 1 2 3 27 27 H 1.08996 * 109.47149 * 179.84948 * 1 2 3 28 28 H 1.09002 * 109.50723 * 302.38779 * 4 2 1 29 29 H 1.09003 * 109.50066 * 62.46186 * 4 2 1 30 30 H 1.08998 * 109.46072 * 299.16581 * 5 4 2 31 31 H 1.09004 * 109.45871 * 179.19818 * 5 4 2 32 32 H 1.08996 * 109.46937 * 174.21372 * 7 6 5 33 33 H 1.08999 * 109.46810 * 54.21210 * 7 6 5 34 34 H 0.96993 * 120.00289 * 359.97438 * 10 8 7 35 35 H 0.97008 * 120.00016 * 179.97438 * 14 13 11 36 36 H 1.08989 * 109.46574 * 181.75692 * 19 6 5 37 37 H 1.09001 * 109.46003 * 301.72893 * 19 6 5 38 38 H 0.96705 * 116.99995 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0417 -0.7252 -1.2477 5 6 3.5708 -0.7753 -1.2114 6 7 4.0102 -1.4790 0.0003 7 6 5.4671 -1.6679 0.0003 8 6 5.8530 -2.5981 -1.1209 9 8 4.9985 -3.0587 -1.8481 10 7 7.1476 -2.9189 -1.3148 11 6 7.4986 -3.7655 -2.3345 12 1 6.7377 -4.1757 -2.9820 13 6 8.8333 -4.0959 -2.5348 14 7 9.1697 -4.9077 -3.5118 15 14 10.1492 -3.3870 -1.4144 16 1 10.6401 -2.1036 -1.9776 17 1 11.2786 -4.3455 -1.3092 18 1 9.5752 -3.1484 -0.0658 19 6 3.5708 -0.7752 1.2118 20 6 2.0417 -0.7250 1.2479 21 1 1.6446 -1.7399 1.2677 22 6 1.5916 0.0163 2.4804 23 8 0.9265 1.0193 2.3731 24 8 1.9295 -0.4378 3.6975 25 1 -0.3634 0.5115 0.8914 26 1 -0.3633 0.5163 -0.8886 27 1 -0.3633 -1.0276 -0.0027 28 1 1.6447 -1.7401 -1.2673 29 1 1.7156 -0.1896 -2.1393 30 1 3.9675 0.2399 -1.2058 31 1 3.9378 -1.3036 -2.0915 32 1 5.7776 -2.0981 0.9524 33 1 5.9582 -0.7051 -0.1409 34 1 7.8308 -2.5508 -0.7331 35 1 10.1016 -5.1381 -3.6519 36 1 3.9377 -1.3032 2.0918 37 1 3.9674 0.2401 1.2060 38 1 1.6179 0.0715 4.4583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822087906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:15 Heat of formation + Delta-G solvation = -124.048662 kcal Electronic energy + Delta-G solvation = -21185.167568 eV Core-core repulsion = 17834.514251 eV Total energy + Delta-G solvation = -3350.653317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89045 -39.12927 -37.80118 -36.38318 -34.46626 -33.76721 -31.68522 -31.33644 -29.17456 -26.54515 -24.56603 -23.84816 -22.26057 -21.37272 -19.69082 -19.37457 -18.37352 -18.12796 -16.88181 -16.28207 -15.72523 -15.12199 -15.01617 -14.83835 -14.38177 -14.07389 -13.86275 -13.65916 -13.21083 -13.00044 -12.56378 -12.47512 -12.34414 -12.03064 -11.85248 -11.61111 -11.46813 -11.40366 -11.11696 -10.84846 -10.68966 -10.59459 -10.42980 -10.14524 -9.97449 -9.52601 -8.58497 -8.18896 -7.99969 -6.31478 -3.82870 1.98259 2.82173 3.02363 3.06328 3.14919 3.72784 3.88713 4.09979 4.42440 4.62831 4.73645 4.84324 5.08190 5.18594 5.20842 5.34483 5.42671 5.47008 5.52470 5.63587 5.68065 5.73865 5.77506 5.81499 5.92295 5.99982 6.09693 6.12334 6.38214 6.42135 6.46664 7.13116 7.26699 7.57976 7.69710 8.14144 8.59762 8.94901 9.42094 9.82766 10.81619 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034529 B = 0.004061 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.726888 B = 6892.948928 C = 7464.553998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.077 4.077 3 H 0.074 0.926 4 C -0.107 4.107 5 C 0.046 3.954 6 N -0.512 5.512 7 C 0.044 3.956 8 C 0.453 3.547 9 O -0.558 6.558 10 N -0.591 5.591 11 C -0.304 4.304 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.881 5.881 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.269 1.269 19 C 0.066 3.934 20 C -0.072 4.072 21 H 0.120 0.880 22 C 0.486 3.514 23 O -0.512 6.512 24 O -0.515 6.515 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.087 0.913 37 H 0.035 0.965 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.338 11.146 12.722 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.095 4.095 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.081 4.081 6 N -0.237 5.237 7 C -0.088 4.088 8 C 0.239 3.761 9 O -0.440 6.440 10 N -0.230 5.230 11 C -0.433 4.433 12 H 0.138 0.862 13 C -0.161 4.161 14 N -0.521 5.521 15 Si 0.705 3.295 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.063 4.063 20 C -0.091 4.091 21 H 0.138 0.862 22 C 0.328 3.672 23 O -0.400 6.400 24 O -0.326 6.326 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -12.004 10.293 11.721 19.683 hybrid contribution 1.441 1.587 1.431 2.578 sum -10.563 11.880 13.152 20.632 Atomic orbital electron populations 1.22009 0.94542 1.01850 1.02937 1.21109 0.96360 0.99241 0.92822 0.90770 1.21631 0.95229 1.01404 0.96224 1.22364 0.95209 0.95812 0.94701 1.61461 1.11657 1.49227 1.01318 1.21876 0.88025 0.98814 1.00040 1.19600 0.83007 0.86031 0.87494 1.90527 1.48771 1.56115 1.48555 1.42212 1.06232 1.44209 1.30394 1.19426 0.94444 1.21979 1.07452 0.86239 1.25030 0.97181 0.96939 0.96969 1.69620 1.18436 1.34115 1.29975 0.86683 0.82372 0.79733 0.80665 1.19683 1.20182 1.19465 1.21981 0.92114 0.97394 0.94802 1.21167 0.97693 1.01261 0.89014 0.86227 1.23581 0.76086 0.82814 0.84683 1.90668 1.36754 1.25464 1.87160 1.84589 1.73327 1.57757 1.16926 0.91075 0.92473 0.92845 0.90428 0.91006 0.95773 0.87373 0.89030 0.93239 0.79725 0.91619 0.89432 0.94700 0.73455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 8.91 37.16 0.33 -1.32 16 2 C -0.08 -0.88 1.93 -90.50 -0.17 -1.05 16 3 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 4 C -0.11 -1.36 5.38 -26.65 -0.14 -1.50 16 5 C 0.05 0.71 5.10 -3.84 -0.02 0.69 16 6 N -0.51 -7.86 4.40 -236.12 -1.04 -8.89 16 7 C 0.04 0.71 5.45 -4.97 -0.03 0.68 16 8 C 0.45 9.99 7.46 -10.98 -0.08 9.91 16 9 O -0.56 -14.39 13.90 5.55 0.08 -14.31 16 10 N -0.59 -13.79 5.09 -10.96 -0.06 -13.85 16 11 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 12 H 0.12 3.80 7.39 -52.48 -0.39 3.42 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 14 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 15 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 19 C 0.07 0.79 4.67 -3.84 -0.02 0.77 16 20 C -0.07 -0.81 2.30 -91.69 -0.21 -1.02 16 21 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 22 C 0.49 5.20 7.35 36.01 0.26 5.46 16 23 O -0.51 -6.57 14.58 -18.75 -0.27 -6.84 16 24 O -0.51 -4.28 13.34 -39.27 -0.52 -4.80 16 25 H 0.07 0.82 5.74 -51.93 -0.30 0.52 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.11 2.03 5.78 -51.93 -0.30 1.73 16 32 H 0.09 1.29 7.99 -51.93 -0.41 0.88 16 33 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.09 0.97 8.01 -51.93 -0.42 0.56 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.41 1.61 9.10 45.56 0.41 2.02 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -33.04 309.18 -6.03 -39.06 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.60 Total: 10.29 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -0.33 Total: 5.03 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.32 Total: -47.51 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.72 Total: -25.95 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.04 -6.03 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822087906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.986 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds