Wall clock time and date at job start Mon Mar 30 2020 02:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.57733 * 2 1 4 4 C 1.53113 * 109.52446 * 239.83362 * 2 1 3 5 5 C 1.53035 * 109.27991 * 182.44309 * 4 2 1 6 6 N 1.46846 * 109.52468 * 59.18062 * 5 4 2 7 7 C 1.46902 * 111.00030 * 174.16020 * 6 5 4 8 8 C 1.50703 * 109.46924 * 294.21058 * 7 6 5 9 9 O 1.21290 * 120.00285 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99541 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99649 * 179.97438 * 10 8 7 12 12 H 1.08003 * 120.00266 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00025 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00069 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99709 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99702 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99882 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99875 * 15 13 11 19 19 C 1.46842 * 111.19935 * 298.26003 * 6 5 4 20 20 C 1.53037 * 109.52374 * 61.73806 * 19 6 5 21 21 H 1.09001 * 109.50388 * 60.76872 * 20 19 6 22 22 C 1.50699 * 109.50403 * 180.88347 * 20 19 6 23 23 O 1.20830 * 120.00652 * 120.00155 * 22 20 19 24 24 O 1.34234 * 119.99809 * 299.99798 * 22 20 19 25 25 H 1.09005 * 109.47175 * 299.84772 * 1 2 3 26 26 H 1.09003 * 109.47019 * 59.84507 * 1 2 3 27 27 H 1.08996 * 109.47149 * 179.84948 * 1 2 3 28 28 H 1.09002 * 109.50723 * 302.38779 * 4 2 1 29 29 H 1.09003 * 109.50066 * 62.46186 * 4 2 1 30 30 H 1.08998 * 109.46072 * 299.16581 * 5 4 2 31 31 H 1.09004 * 109.45871 * 179.19818 * 5 4 2 32 32 H 1.08996 * 109.46937 * 174.21372 * 7 6 5 33 33 H 1.08999 * 109.46810 * 54.21210 * 7 6 5 34 34 H 0.96993 * 120.00289 * 359.97438 * 10 8 7 35 35 H 0.97008 * 120.00016 * 179.97438 * 14 13 11 36 36 H 1.08989 * 109.46574 * 181.75692 * 19 6 5 37 37 H 1.09001 * 109.46003 * 301.72893 * 19 6 5 38 38 H 0.96705 * 116.99995 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0417 -0.7252 -1.2477 5 6 3.5708 -0.7753 -1.2114 6 7 4.0102 -1.4790 0.0003 7 6 5.4671 -1.6679 0.0003 8 6 5.8530 -2.5981 -1.1209 9 8 4.9985 -3.0587 -1.8481 10 7 7.1476 -2.9189 -1.3148 11 6 7.4986 -3.7655 -2.3345 12 1 6.7377 -4.1757 -2.9820 13 6 8.8333 -4.0959 -2.5348 14 7 9.1697 -4.9077 -3.5118 15 14 10.1492 -3.3870 -1.4144 16 1 10.6401 -2.1036 -1.9776 17 1 11.2786 -4.3455 -1.3092 18 1 9.5752 -3.1484 -0.0658 19 6 3.5708 -0.7752 1.2118 20 6 2.0417 -0.7250 1.2479 21 1 1.6446 -1.7399 1.2677 22 6 1.5916 0.0163 2.4804 23 8 0.9265 1.0193 2.3731 24 8 1.9295 -0.4378 3.6975 25 1 -0.3634 0.5115 0.8914 26 1 -0.3633 0.5163 -0.8886 27 1 -0.3633 -1.0276 -0.0027 28 1 1.6447 -1.7401 -1.2673 29 1 1.7156 -0.1896 -2.1393 30 1 3.9675 0.2399 -1.2058 31 1 3.9378 -1.3036 -2.0915 32 1 5.7776 -2.0981 0.9524 33 1 5.9582 -0.7051 -0.1409 34 1 7.8308 -2.5508 -0.7331 35 1 10.1016 -5.1381 -3.6519 36 1 3.9377 -1.3032 2.0918 37 1 3.9674 0.2401 1.2060 38 1 1.6179 0.0715 4.4583 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822087906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:15 Heat of formation + Delta-G solvation = -150.470027 kcal Electronic energy + Delta-G solvation = -21186.313285 eV Core-core repulsion = 17834.514251 eV Total energy + Delta-G solvation = -3351.799034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.76224 -40.53498 -39.15872 -37.18088 -36.05384 -35.24184 -33.71837 -32.33058 -30.36653 -27.93761 -25.96883 -25.14178 -23.15736 -22.47093 -21.22117 -20.62763 -20.17797 -18.96552 -17.82530 -17.76308 -16.90681 -16.60326 -16.30226 -16.15894 -15.47110 -15.37681 -15.11621 -14.97583 -14.65294 -14.31097 -14.04995 -13.72773 -13.52757 -13.31179 -13.00852 -12.76930 -12.57326 -12.44129 -12.39527 -12.29643 -11.96365 -11.83700 -11.68498 -11.45181 -11.36326 -11.10126 -10.30909 -10.19184 -9.23728 -8.38586 -5.98975 1.17330 1.32254 1.37353 1.46314 1.99580 2.06879 2.25298 2.66529 3.17914 3.23159 3.53969 3.70649 3.90012 4.07421 4.21434 4.28858 4.38267 4.46108 4.50352 4.52649 4.55461 4.67668 4.78174 4.82153 4.85425 5.04881 5.15789 5.21443 5.33774 5.42117 5.56157 5.69483 5.91278 6.03759 6.16671 6.62970 6.91971 7.03557 7.43535 8.01030 8.79120 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034529 B = 0.004061 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.726888 B = 6892.948928 C = 7464.553998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 H 0.072 0.928 4 C -0.101 4.101 5 C 0.048 3.952 6 N -0.532 5.532 7 C 0.054 3.946 8 C 0.452 3.548 9 O -0.603 6.603 10 N -0.593 5.593 11 C -0.325 4.325 12 H 0.056 0.944 13 C -0.015 4.015 14 N -0.936 5.936 15 Si 0.963 3.037 16 H -0.258 1.258 17 H -0.277 1.277 18 H -0.230 1.230 19 C 0.070 3.930 20 C -0.073 4.073 21 H 0.119 0.881 22 C 0.497 3.503 23 O -0.536 6.536 24 O -0.509 6.509 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.389 0.611 35 H 0.278 0.722 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 13.232 16.082 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 H 0.091 0.909 4 C -0.138 4.138 5 C -0.079 4.079 6 N -0.257 5.257 7 C -0.077 4.077 8 C 0.240 3.760 9 O -0.486 6.486 10 N -0.235 5.235 11 C -0.455 4.455 12 H 0.074 0.926 13 C -0.214 4.214 14 N -0.577 5.577 15 Si 0.784 3.216 16 H -0.183 1.183 17 H -0.202 1.202 18 H -0.153 1.153 19 C -0.058 4.058 20 C -0.092 4.092 21 H 0.137 0.863 22 C 0.340 3.660 23 O -0.426 6.426 24 O -0.323 6.323 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.097 0.903 34 H 0.225 0.775 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.065 0.935 38 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -11.403 12.397 15.129 22.641 hybrid contribution 1.110 0.887 0.338 1.461 sum -10.293 13.284 15.467 22.840 Atomic orbital electron populations 1.21953 0.93847 1.02097 1.02948 1.21016 0.96856 0.98798 0.92214 0.90920 1.21556 0.93587 1.01015 0.97670 1.22229 0.96702 0.95631 0.93357 1.61389 1.11184 1.50599 1.02494 1.21821 0.89049 0.98478 0.98320 1.20846 0.81968 0.85309 0.87862 1.90521 1.50056 1.57607 1.50455 1.42037 1.07422 1.44120 1.29943 1.18995 0.93827 1.23882 1.08764 0.92616 1.26090 0.99734 0.96809 0.98739 1.69807 1.19474 1.35979 1.32458 0.85385 0.77759 0.78873 0.79629 1.18298 1.20191 1.15284 1.22020 0.92477 0.97829 0.93463 1.21113 0.97335 1.01322 0.89445 0.86288 1.23258 0.75521 0.82099 0.85124 1.90674 1.37877 1.26441 1.87582 1.84531 1.72907 1.57892 1.16937 0.91665 0.91821 0.92496 0.91829 0.90074 0.94499 0.91721 0.85785 0.90344 0.77549 0.91232 0.87836 0.93508 0.71037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.91 71.98 0.64 -2.32 16 2 C -0.07 -1.48 1.93 -10.71 -0.02 -1.50 16 3 H 0.07 1.59 8.05 -2.39 -0.02 1.57 16 4 C -0.10 -2.50 5.38 30.64 0.16 -2.33 16 5 C 0.05 1.45 5.10 86.33 0.44 1.89 16 6 N -0.53 -15.28 4.40 -900.96 -3.96 -19.24 16 7 C 0.05 1.60 5.45 85.56 0.47 2.07 16 8 C 0.45 19.91 7.46 87.66 0.65 20.57 16 9 O -0.60 -32.46 13.90 -3.06 -0.04 -32.50 16 10 N -0.59 -27.46 5.09 -306.98 -1.56 -29.02 16 11 C -0.33 -18.87 10.16 84.04 0.85 -18.02 16 12 H 0.06 3.86 7.39 -2.91 -0.02 3.83 16 13 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 14 N -0.94 -56.32 13.96 21.66 0.30 -56.02 16 15 Si 0.96 38.36 27.74 68.60 1.90 40.26 16 16 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 17 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 19 C 0.07 1.44 4.67 86.33 0.40 1.85 16 20 C -0.07 -1.45 2.30 -11.49 -0.03 -1.48 16 21 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 22 C 0.50 9.20 7.35 71.24 0.52 9.72 16 23 O -0.54 -12.44 14.58 21.95 0.32 -12.12 16 24 O -0.51 -6.66 13.34 -51.46 -0.69 -7.35 16 25 H 0.06 1.39 5.74 -2.38 -0.01 1.38 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 2.52 5.78 -2.38 -0.01 2.50 16 32 H 0.12 2.93 7.99 -2.39 -0.02 2.91 16 33 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 34 H 0.39 14.83 5.76 -92.71 -0.53 14.30 16 35 H 0.28 15.31 8.31 -92.70 -0.77 14.54 16 36 H 0.10 1.84 8.01 -2.39 -0.02 1.82 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.43 1.84 9.10 -74.05 -0.67 1.17 16 Total: -1.00 -77.06 309.18 0.66 -76.40 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.18 Total: 29.52 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 4.57 Total: 10.07 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -5.22 Total: -104.28 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -0.41 Total: -51.97 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.26 kcal Total: -77.06 0.66 -76.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822087906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.069 kcal (2) G-P(sol) polarization free energy of solvation -77.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds