Wall clock time and date at job start Mon Mar 30 2020 01:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47027 * 2 1 4 4 C 1.52999 * 109.47005 * 119.99719 * 2 1 3 5 5 C 1.52998 * 109.47226 * 300.00132 * 4 2 1 6 6 C 1.50702 * 109.46918 * 180.02562 * 5 4 2 7 7 O 1.21293 * 120.00207 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99667 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99762 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99501 * 140.10520 * 9 8 6 11 11 C 1.38946 * 119.99889 * 320.10685 * 9 8 6 12 12 N 1.31413 * 120.00049 * 161.98274 * 11 9 8 13 13 Si 1.86803 * 120.00182 * 341.97189 * 11 9 8 14 14 H 1.48507 * 109.46666 * 93.80447 * 13 11 9 15 15 H 1.48494 * 109.47200 * 213.80459 * 13 11 9 16 16 H 1.48500 * 109.47261 * 333.81169 * 13 11 9 17 17 C 1.46496 * 120.00180 * 0.02562 * 8 6 5 18 18 C 1.52999 * 117.49838 * 182.29132 * 17 8 6 19 19 C 1.52992 * 117.50189 * 113.66510 * 17 8 6 20 20 N 1.46494 * 109.46930 * 240.00056 * 2 1 3 21 21 O 1.21809 * 119.99494 * 239.99537 * 20 2 1 22 22 O 1.21797 * 120.00447 * 59.99955 * 20 2 1 23 23 H 1.09003 * 109.47343 * 299.99790 * 1 2 3 24 24 H 1.09001 * 109.47535 * 60.00322 * 1 2 3 25 25 H 1.09005 * 109.47272 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47523 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47345 * 299.99966 * 3 2 1 28 28 H 1.09004 * 109.47279 * 59.99561 * 3 2 1 29 29 H 1.08998 * 109.47015 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47229 * 60.00593 * 4 2 1 31 31 H 1.09008 * 109.47273 * 299.99944 * 5 4 2 32 32 H 1.08998 * 109.47174 * 60.00035 * 5 4 2 33 33 H 0.96994 * 120.00091 * 179.97438 * 12 11 9 34 34 H 1.08998 * 115.55189 * 327.99078 * 17 8 6 35 35 H 1.09006 * 117.50278 * 359.97438 * 18 17 8 36 36 H 1.09002 * 117.50427 * 145.01987 * 18 17 8 37 37 H 1.09004 * 117.49818 * 214.97802 * 19 17 8 38 38 H 1.09004 * 117.49665 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 0.0001 2.4985 6 6 2.0328 -0.7100 3.7290 7 8 2.7301 -1.6962 3.6177 8 7 1.7068 -0.2497 4.9531 9 6 2.1639 -0.8960 6.0725 10 1 2.4951 -0.3257 6.9278 11 6 2.2010 -2.2845 6.1066 12 7 2.9454 -2.9003 6.9974 13 14 1.1925 -3.2761 4.8862 14 1 2.0313 -3.6107 3.7073 15 1 0.7248 -4.5285 5.5326 16 1 0.0198 -2.4771 4.4484 17 6 0.8633 0.9405 5.0874 18 6 0.5729 1.4444 6.5026 19 6 -0.5286 0.7549 5.6949 20 7 2.0183 -0.6906 -1.1961 21 8 2.7186 -1.6809 -1.0843 22 8 1.7240 -0.2745 -2.3024 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 -0.7208 1.2495 30 1 1.6767 -1.7489 1.2493 31 1 1.8933 1.0278 2.4985 32 1 0.4400 0.0001 2.4985 33 1 2.9710 -3.8696 7.0215 34 1 0.9734 1.6861 4.3001 35 1 1.0091 0.8902 7.3337 36 1 0.4920 2.5218 6.6465 37 1 -1.3341 1.3788 5.3074 38 1 -0.8169 -0.2528 5.9942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822747659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:20 Heat of formation + Delta-G solvation = -7.845276 kcal Electronic energy + Delta-G solvation = -21925.530533 eV Core-core repulsion = 18579.916173 eV Total energy + Delta-G solvation = -3345.614360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.35442 -39.44767 -37.28693 -36.41791 -36.36364 -33.04715 -31.70520 -30.68202 -28.10430 -27.07127 -25.86230 -23.70106 -22.07311 -21.56899 -20.62172 -19.14564 -18.51235 -18.00398 -17.43382 -16.91042 -16.27323 -15.70000 -14.98504 -14.65399 -14.12842 -13.96081 -13.59653 -13.50901 -13.10143 -13.00663 -12.59207 -12.29931 -12.03922 -11.85960 -11.78910 -11.41525 -11.31751 -11.17511 -11.04978 -10.89099 -10.87032 -10.77942 -10.42535 -10.14396 -10.04566 -9.70868 -8.66235 -8.54669 -7.61372 -6.25183 -4.03980 0.64926 1.70399 3.17527 3.38919 3.63261 3.69619 3.81137 4.02815 4.14867 4.34019 4.38031 4.56651 4.95172 4.96898 5.04550 5.10539 5.10858 5.16533 5.25797 5.31350 5.41497 5.46235 5.48196 5.54109 5.61238 5.71353 5.99582 6.03441 6.17195 6.21083 6.42062 6.54203 6.73409 7.70971 7.75782 7.84076 8.65938 8.78927 9.33656 9.67377 10.78440 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.006510 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.578583 B = 4299.876151 C = 5064.078118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.041 3.959 3 C -0.155 4.155 4 C -0.101 4.101 5 C -0.131 4.131 6 C 0.443 3.557 7 O -0.536 6.536 8 N -0.432 5.432 9 C -0.351 4.351 10 H 0.097 0.903 11 C 0.089 3.911 12 N -0.865 5.865 13 Si 0.921 3.079 14 H -0.248 1.248 15 H -0.314 1.314 16 H -0.286 1.286 17 C 0.061 3.939 18 C -0.171 4.171 19 C -0.199 4.199 20 N -0.013 5.013 21 O -0.154 6.154 22 O -0.174 6.174 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.273 0.727 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.510 10.769 -10.322 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.038 4.038 3 C -0.213 4.213 4 C -0.140 4.140 5 C -0.172 4.172 6 C 0.233 3.767 7 O -0.420 6.420 8 N -0.152 5.152 9 C -0.476 4.476 10 H 0.115 0.885 11 C -0.121 4.121 12 N -0.499 5.499 13 Si 0.753 3.247 14 H -0.174 1.174 15 H -0.244 1.244 16 H -0.212 1.212 17 C -0.045 4.045 18 C -0.209 4.209 19 C -0.238 4.238 20 N 0.509 4.491 21 O -0.376 6.376 22 O -0.391 6.391 23 H 0.120 0.880 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.331 10.515 -9.640 16.039 hybrid contribution -0.491 -0.604 -0.621 0.996 sum -7.822 9.911 -10.261 16.270 Atomic orbital electron populations 1.22254 0.88932 1.04822 1.05422 1.23700 0.98897 0.96286 0.84895 1.22238 1.02977 0.90675 1.05374 1.21572 1.03625 1.00069 0.88688 1.21702 1.01843 1.00321 0.93349 1.20011 0.84774 0.87641 0.84248 1.90558 1.40084 1.26112 1.85227 1.43141 1.42398 1.24441 1.05208 1.18787 1.44357 0.89797 0.94698 0.88504 1.25338 0.94096 0.97047 0.95583 1.69722 1.34524 1.09935 1.35758 0.86220 0.78560 0.77815 0.82092 1.17424 1.24419 1.21209 1.21815 0.93460 0.91937 0.97265 1.23129 1.02528 0.99341 0.95872 1.23284 0.92188 1.02438 1.05891 1.45073 0.98990 1.00736 1.04291 1.94581 1.33720 1.15529 1.93783 1.94474 1.61069 1.69090 1.14497 0.88030 0.89888 0.90772 0.90662 0.89947 0.88075 0.88697 0.89136 0.89420 0.89656 0.91679 0.87254 0.87027 0.89366 0.89488 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.22 37.16 0.31 -1.21 16 2 C 0.04 0.49 1.00 -131.82 -0.13 0.36 16 3 C -0.16 -1.43 8.22 37.16 0.31 -1.12 16 4 C -0.10 -1.54 2.83 -26.73 -0.08 -1.62 16 5 C -0.13 -1.98 3.62 -27.88 -0.10 -2.08 16 6 C 0.44 9.77 5.87 -10.98 -0.06 9.70 16 7 O -0.54 -14.22 10.83 5.55 0.06 -14.16 16 8 N -0.43 -9.72 2.56 -107.73 -0.28 -10.00 16 9 C -0.35 -9.48 8.77 -14.93 -0.13 -9.61 16 10 H 0.10 2.74 6.96 -52.49 -0.37 2.37 16 11 C 0.09 2.56 4.90 -17.47 -0.09 2.48 16 12 N -0.86 -26.10 13.96 55.50 0.77 -25.32 16 13 Si 0.92 24.24 24.53 -169.99 -4.17 20.07 16 14 H -0.25 -6.86 6.10 56.52 0.34 -6.52 16 15 H -0.31 -8.22 7.11 56.52 0.40 -7.82 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 C 0.06 1.04 5.85 -67.94 -0.40 0.64 16 18 C -0.17 -2.72 9.80 -26.73 -0.26 -2.98 16 19 C -0.20 -3.10 10.37 -26.73 -0.28 -3.38 16 20 N -0.01 -0.19 3.82 0.53 0.00 -0.18 16 21 O -0.15 -2.63 17.93 -29.46 -0.53 -3.16 16 22 O -0.17 -2.57 18.50 -29.46 -0.55 -3.12 16 23 H 0.10 0.79 6.43 -51.93 -0.33 0.46 16 24 H 0.08 0.69 8.03 -51.93 -0.42 0.28 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.67 8.03 -51.92 -0.42 0.25 16 28 H 0.10 0.73 6.43 -51.93 -0.33 0.39 16 29 H 0.09 1.59 8.02 -51.93 -0.42 1.17 16 30 H 0.09 1.58 8.02 -51.93 -0.42 1.16 16 31 H 0.09 1.05 5.86 -51.92 -0.30 0.75 16 32 H 0.09 1.11 6.39 -51.93 -0.33 0.78 16 33 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 34 H 0.11 1.45 6.99 -51.93 -0.36 1.08 16 35 H 0.11 2.08 6.49 -51.93 -0.34 1.74 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -33.57 308.57 -6.29 -39.86 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.34 Total: 0.18 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.91 Total: -8.82 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.50 Total: -35.51 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -1.01 Total: -20.43 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -4.17 Total: 20.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.57 -6.29 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822747659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.013 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds