Wall clock time and date at job start Mon Mar 30 2020 01:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47027 * 2 1 4 4 C 1.52999 * 109.47005 * 119.99719 * 2 1 3 5 5 C 1.52998 * 109.47226 * 300.00132 * 4 2 1 6 6 C 1.50702 * 109.46918 * 180.02562 * 5 4 2 7 7 O 1.21293 * 120.00207 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99667 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99762 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99501 * 140.10520 * 9 8 6 11 11 C 1.38946 * 119.99889 * 320.10685 * 9 8 6 12 12 N 1.31413 * 120.00049 * 161.98274 * 11 9 8 13 13 Si 1.86803 * 120.00182 * 341.97189 * 11 9 8 14 14 H 1.48507 * 109.46666 * 93.80447 * 13 11 9 15 15 H 1.48494 * 109.47200 * 213.80459 * 13 11 9 16 16 H 1.48500 * 109.47261 * 333.81169 * 13 11 9 17 17 C 1.46496 * 120.00180 * 0.02562 * 8 6 5 18 18 C 1.52999 * 117.49838 * 182.29132 * 17 8 6 19 19 C 1.52992 * 117.50189 * 113.66510 * 17 8 6 20 20 N 1.46494 * 109.46930 * 240.00056 * 2 1 3 21 21 O 1.21809 * 119.99494 * 239.99537 * 20 2 1 22 22 O 1.21797 * 120.00447 * 59.99955 * 20 2 1 23 23 H 1.09003 * 109.47343 * 299.99790 * 1 2 3 24 24 H 1.09001 * 109.47535 * 60.00322 * 1 2 3 25 25 H 1.09005 * 109.47272 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47523 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47345 * 299.99966 * 3 2 1 28 28 H 1.09004 * 109.47279 * 59.99561 * 3 2 1 29 29 H 1.08998 * 109.47015 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47229 * 60.00593 * 4 2 1 31 31 H 1.09008 * 109.47273 * 299.99944 * 5 4 2 32 32 H 1.08998 * 109.47174 * 60.00035 * 5 4 2 33 33 H 0.96994 * 120.00091 * 179.97438 * 12 11 9 34 34 H 1.08998 * 115.55189 * 327.99078 * 17 8 6 35 35 H 1.09006 * 117.50278 * 359.97438 * 18 17 8 36 36 H 1.09002 * 117.50427 * 145.01987 * 18 17 8 37 37 H 1.09004 * 117.49818 * 214.97802 * 19 17 8 38 38 H 1.09004 * 117.49665 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 0.0001 2.4985 6 6 2.0328 -0.7100 3.7290 7 8 2.7301 -1.6962 3.6177 8 7 1.7068 -0.2497 4.9531 9 6 2.1639 -0.8960 6.0725 10 1 2.4951 -0.3257 6.9278 11 6 2.2010 -2.2845 6.1066 12 7 2.9454 -2.9003 6.9974 13 14 1.1925 -3.2761 4.8862 14 1 2.0313 -3.6107 3.7073 15 1 0.7248 -4.5285 5.5326 16 1 0.0198 -2.4771 4.4484 17 6 0.8633 0.9405 5.0874 18 6 0.5729 1.4444 6.5026 19 6 -0.5286 0.7549 5.6949 20 7 2.0183 -0.6906 -1.1961 21 8 2.7186 -1.6809 -1.0843 22 8 1.7240 -0.2745 -2.3024 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 -0.7208 1.2495 30 1 1.6767 -1.7489 1.2493 31 1 1.8933 1.0278 2.4985 32 1 0.4400 0.0001 2.4985 33 1 2.9710 -3.8696 7.0215 34 1 0.9734 1.6861 4.3001 35 1 1.0091 0.8902 7.3337 36 1 0.4920 2.5218 6.6465 37 1 -1.3341 1.3788 5.3074 38 1 -0.8169 -0.2528 5.9942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822747659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:19 Heat of formation + Delta-G solvation = -30.675823 kcal Electronic energy + Delta-G solvation = -21926.520540 eV Core-core repulsion = 18579.916173 eV Total energy + Delta-G solvation = -3346.604367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.45270 -41.10439 -38.47724 -37.78740 -37.54792 -34.95881 -33.50752 -32.03999 -28.78574 -28.07445 -27.58147 -25.21904 -23.37762 -22.93578 -21.86853 -20.77883 -19.65549 -19.31411 -18.49901 -18.46307 -17.71050 -17.39262 -16.51053 -15.93416 -15.53986 -15.39700 -14.91453 -14.74909 -14.63723 -14.11392 -14.03928 -13.56049 -13.27318 -13.11388 -12.92271 -12.69455 -12.57886 -12.44454 -12.29474 -12.22701 -12.20190 -12.07222 -12.00648 -11.90171 -11.60037 -11.19976 -10.75472 -10.44016 -9.43521 -8.44553 -6.19133 -0.54544 0.68942 1.15976 1.25499 1.48978 1.88579 2.40315 2.50025 2.93614 3.01140 3.18008 3.24036 3.31308 3.78951 3.96715 3.98468 4.10221 4.19001 4.25837 4.33674 4.44039 4.45961 4.48505 4.57121 4.69689 4.88154 4.91411 5.00246 5.00615 5.03007 5.25673 5.29717 5.47599 5.66423 5.81917 6.48583 6.72057 6.86284 7.32217 7.83022 8.62600 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.006510 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.578583 B = 4299.876151 C = 5064.078118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.046 3.954 3 C -0.155 4.155 4 C -0.097 4.097 5 C -0.116 4.116 6 C 0.435 3.565 7 O -0.591 6.591 8 N -0.451 5.451 9 C -0.336 4.336 10 H 0.072 0.928 11 C 0.037 3.963 12 N -0.915 5.915 13 Si 0.970 3.030 14 H -0.278 1.278 15 H -0.319 1.319 16 H -0.261 1.261 17 C 0.044 3.956 18 C -0.174 4.174 19 C -0.184 4.184 20 N -0.010 5.010 21 O -0.236 6.236 22 O -0.134 6.134 23 H 0.133 0.867 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.270 0.730 34 H 0.165 0.835 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 15.085 -12.388 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.032 4.032 3 C -0.212 4.212 4 C -0.136 4.136 5 C -0.156 4.156 6 C 0.227 3.773 7 O -0.477 6.477 8 N -0.171 5.171 9 C -0.463 4.463 10 H 0.090 0.910 11 C -0.167 4.167 12 N -0.553 5.553 13 Si 0.802 3.198 14 H -0.206 1.206 15 H -0.250 1.250 16 H -0.185 1.185 17 C -0.059 4.059 18 C -0.212 4.212 19 C -0.223 4.223 20 N 0.509 4.491 21 O -0.440 6.440 22 O -0.367 6.367 23 H 0.151 0.849 24 H 0.123 0.877 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.153 0.847 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.182 0.818 35 H 0.088 0.912 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.357 14.755 -11.611 21.443 hybrid contribution 0.442 -1.726 -0.063 1.782 sum -9.915 13.029 -11.674 20.109 Atomic orbital electron populations 1.22428 0.86236 1.04796 1.08051 1.23912 1.00567 0.96850 0.81821 1.22417 1.02526 0.88263 1.08034 1.21390 1.02043 0.99090 0.91039 1.21730 1.03848 1.01291 0.88758 1.21306 0.83151 0.86809 0.86018 1.90530 1.42220 1.28786 1.86210 1.43370 1.43729 1.25921 1.04046 1.18687 1.42933 0.89359 0.95305 0.91029 1.25984 0.95349 0.98501 0.96845 1.69818 1.37365 1.09866 1.38258 0.85399 0.77921 0.77030 0.79422 1.20574 1.25005 1.18511 1.22350 0.93464 0.90575 0.99556 1.23160 1.02586 1.01345 0.94078 1.23343 0.92705 1.01511 1.04708 1.45590 0.98250 1.00299 1.05005 1.94623 1.37218 1.18019 1.94102 1.94422 1.59004 1.67857 1.15463 0.84876 0.87750 0.92199 0.91712 0.87933 0.84730 0.91434 0.92558 0.84705 0.85922 0.92050 0.81772 0.91227 0.85116 0.84417 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.22 71.98 0.59 -1.63 16 2 C 0.05 0.95 1.00 3.60 0.00 0.96 16 3 C -0.16 -2.01 8.22 71.98 0.59 -1.42 16 4 C -0.10 -2.82 2.83 30.59 0.09 -2.73 16 5 C -0.12 -3.00 3.62 29.85 0.11 -2.89 16 6 C 0.43 18.53 5.87 87.66 0.51 19.05 16 7 O -0.59 -32.11 10.83 -3.07 -0.03 -32.14 16 8 N -0.45 -19.56 2.56 -613.15 -1.57 -21.13 16 9 C -0.34 -18.56 8.77 84.04 0.74 -17.82 16 10 H 0.07 4.24 6.96 -2.91 -0.02 4.22 16 11 C 0.04 2.20 4.90 84.93 0.42 2.62 16 12 N -0.91 -58.33 13.96 21.66 0.30 -58.03 16 13 Si 0.97 52.03 24.53 68.60 1.68 53.71 16 14 H -0.28 -16.10 6.10 99.48 0.61 -15.49 16 15 H -0.32 -17.02 7.11 99.48 0.71 -16.31 16 16 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 17 C 0.04 1.29 5.85 44.99 0.26 1.56 16 18 C -0.17 -4.94 9.80 30.59 0.30 -4.64 16 19 C -0.18 -4.87 10.37 30.59 0.32 -4.56 16 20 N -0.01 -0.27 3.82 -152.23 -0.58 -0.85 16 21 O -0.24 -8.43 17.93 18.88 0.34 -8.09 16 22 O -0.13 -3.59 18.50 18.89 0.35 -3.24 16 23 H 0.13 1.06 6.43 -2.39 -0.02 1.04 16 24 H 0.10 1.10 8.03 -2.39 -0.02 1.08 16 25 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.01 8.03 -2.38 -0.02 0.99 16 28 H 0.13 0.86 6.43 -2.38 -0.02 0.85 16 29 H 0.07 2.31 8.02 -2.39 -0.02 2.29 16 30 H 0.06 2.01 8.02 -2.39 -0.02 1.99 16 31 H 0.14 2.26 5.86 -2.38 -0.01 2.25 16 32 H 0.12 2.36 6.39 -2.39 -0.02 2.34 16 33 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 34 H 0.17 2.99 6.99 -2.39 -0.02 2.97 16 35 H 0.07 2.59 6.49 -2.38 -0.02 2.57 16 36 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -83.08 308.57 5.38 -77.69 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 0.96 Total: 3.59 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 3.93 Total: -11.52 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.85 Total: -80.01 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: 0.65 Total: -43.47 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 1.68 Total: 53.71 kcal Total: -83.08 5.38 -77.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822747659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.018 kcal (2) G-P(sol) polarization free energy of solvation -83.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds