Wall clock time and date at job start Mon Mar 30 2020 01:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46971 * 2 1 4 4 C 1.50703 * 109.47102 * 240.00337 * 2 1 3 5 5 H 1.07999 * 120.00000 * 239.99519 * 4 2 1 6 6 C 1.37875 * 119.99808 * 59.99744 * 4 2 1 7 7 N 1.31510 * 120.00644 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99695 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47237 * 60.00274 * 8 6 4 10 10 H 1.48500 * 109.47301 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46975 * 300.00247 * 8 6 4 12 12 C 1.52992 * 109.47212 * 120.00018 * 2 1 3 13 13 N 1.46501 * 109.47447 * 300.00169 * 12 2 1 14 14 C 1.34770 * 120.00246 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00373 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00146 * 179.97438 * 14 13 12 17 17 N 1.46499 * 109.46938 * 180.02562 * 16 14 13 18 18 C 1.47093 * 125.55889 * 90.00705 * 17 16 14 19 19 C 1.54091 * 103.77776 * 180.02562 * 18 17 16 20 20 O 1.45704 * 104.12991 * 359.92869 * 19 18 17 21 21 C 1.34001 * 125.56070 * 270.01771 * 17 16 14 22 22 O 1.21513 * 123.07229 * 0.03827 * 21 17 16 23 23 H 1.08989 * 109.47254 * 299.99644 * 1 2 3 24 24 H 1.08996 * 109.47219 * 60.00053 * 1 2 3 25 25 H 1.09003 * 109.46649 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47559 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47198 * 300.00495 * 3 2 1 28 28 H 1.09003 * 109.46964 * 60.00024 * 3 2 1 29 29 H 0.97000 * 120.00501 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47568 * 180.02562 * 12 2 1 31 31 H 1.09008 * 109.47440 * 60.00289 * 12 2 1 32 32 H 0.97003 * 119.99445 * 0.02562 * 13 12 2 33 33 H 1.09004 * 109.46863 * 60.00532 * 16 14 13 34 34 H 1.08996 * 109.46918 * 300.00602 * 16 14 13 35 35 H 1.09000 * 110.56724 * 61.43908 * 18 17 16 36 36 H 1.09004 * 110.68940 * 298.64853 * 18 17 16 37 37 H 1.09002 * 110.52360 * 118.62859 * 19 18 17 38 38 H 1.09002 * 110.51975 * 241.22721 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.8281 -2.5196 -4.0083 10 1 1.8279 -0.4190 -5.2205 11 1 3.8075 -1.1187 -4.0077 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6694 15 8 2.5742 -1.4775 3.7808 16 6 1.3750 0.2192 4.9000 17 7 1.8633 -0.4715 6.0961 18 6 3.1257 -0.1842 6.7943 19 6 3.1360 -1.1893 7.9623 20 8 1.8914 -1.9303 7.8049 21 6 1.2330 -1.4682 6.7323 22 8 0.1617 -1.9131 6.3705 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 0.7095 1.1619 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6768 -1.7490 1.2492 32 1 0.9937 0.7578 2.3564 33 1 0.2850 0.2199 4.8999 34 1 1.7391 1.2466 4.9000 35 1 3.1314 0.8391 7.1696 36 1 3.9775 -0.3541 6.1356 37 1 3.9922 -1.8592 7.8824 38 1 3.1503 -0.6648 8.9176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823519035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:56 Heat of formation + Delta-G solvation = -104.528077 kcal Electronic energy + Delta-G solvation = -21106.962255 eV Core-core repulsion = 17757.155414 eV Total energy + Delta-G solvation = -3349.806841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.62387 -39.28561 -37.20684 -36.50267 -35.31984 -33.35038 -31.13066 -30.34855 -28.16662 -25.75673 -25.55714 -24.73103 -23.84136 -21.68980 -20.16231 -18.85559 -17.78262 -17.48216 -16.97213 -16.68420 -15.77004 -15.46257 -15.00754 -14.64122 -14.57943 -14.23028 -13.93849 -13.65102 -13.12409 -13.00045 -12.84316 -12.59022 -12.22140 -12.02349 -11.38863 -11.21629 -10.86684 -10.84245 -10.75064 -10.68667 -10.41395 -10.24061 -9.97674 -9.66617 -9.41998 -8.92993 -8.79353 -8.50712 -8.35614 -6.04069 -4.14316 2.18038 2.68846 2.90183 3.29080 3.29419 3.33421 3.37090 3.71659 3.93861 4.38296 4.42402 4.47564 4.94119 4.97808 5.04732 5.12500 5.22725 5.28185 5.53737 6.07240 6.20716 6.28831 6.47237 6.72760 6.78960 6.89217 6.96256 6.98936 7.19853 7.32157 7.52816 7.67057 7.89511 7.98428 7.99025 8.11704 8.35673 8.58844 8.85926 9.51637 10.97285 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042144 B = 0.003668 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.223363 B = 7632.545036 C = 7688.569355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.133 3.867 13 N -0.713 5.713 14 C 0.484 3.516 15 O -0.543 6.543 16 C 0.127 3.873 17 N -0.613 5.613 18 C 0.067 3.933 19 C 0.043 3.957 20 O -0.328 6.328 21 C 0.649 3.351 22 O -0.518 6.518 23 H 0.007 0.993 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.086 0.914 28 H 0.006 0.994 29 H 0.261 0.739 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.399 0.601 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 4.614 17.479 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.267 3.733 15 O -0.421 6.421 16 C 0.002 3.998 17 N -0.359 5.359 18 C -0.056 4.056 19 C -0.032 4.032 20 O -0.239 6.239 21 C 0.403 3.597 22 O -0.402 6.402 23 H 0.026 0.974 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.234 0.766 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.720 3.598 17.362 18.117 hybrid contribution 0.301 0.025 -1.024 1.068 sum 4.021 3.623 16.338 17.211 Atomic orbital electron populations 1.21833 0.97655 0.99297 1.00105 1.18364 0.92880 0.92758 0.90511 1.21826 0.98511 0.98317 1.00101 1.20940 1.31611 1.12143 0.89903 0.92523 1.24869 0.94819 0.94912 0.98836 1.69785 1.36593 1.22698 1.23369 0.86629 0.79208 0.79843 0.82157 1.20256 1.21304 1.20296 1.21737 0.98046 0.95908 0.83268 1.46278 1.52481 1.31813 1.05870 1.20980 0.81516 0.85502 0.85282 1.90684 1.38396 1.26199 1.86783 1.21163 1.01776 0.95702 0.81124 1.47395 1.22106 1.37746 1.28701 1.22820 0.88403 1.00230 0.94138 1.24248 0.85758 0.93811 0.99380 1.87363 1.34238 1.57389 1.44864 1.18439 0.83841 0.78818 0.78617 1.91052 1.19704 1.62035 1.67442 0.97443 0.89572 0.95392 0.95484 0.89564 0.97507 0.92922 0.92712 0.92679 0.76593 0.86522 0.86794 0.88927 0.88666 0.87646 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 4 C -0.51 -13.20 8.01 -34.44 -0.28 -13.47 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.36 9.35 55.43 0.52 -22.84 16 8 Si 0.89 20.64 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.78 4.50 -4.05 -0.02 2.76 16 13 N -0.71 -12.04 4.96 -60.29 -0.30 -12.34 16 14 C 0.48 7.99 7.90 -10.99 -0.09 7.90 16 15 O -0.54 -11.22 16.43 5.56 0.09 -11.13 16 16 C 0.13 1.48 6.49 -5.19 -0.03 1.44 16 17 N -0.61 -7.51 2.45 -180.13 -0.44 -7.95 16 18 C 0.07 0.51 7.70 -3.15 -0.02 0.49 16 19 C 0.04 0.30 8.22 37.73 0.31 0.61 16 20 O -0.33 -4.28 11.11 -38.59 -0.43 -4.70 16 21 C 0.65 10.11 8.85 53.71 0.48 10.59 16 22 O -0.52 -10.25 17.55 -19.10 -0.34 -10.58 16 23 H 0.01 0.13 6.86 -51.94 -0.36 -0.23 16 24 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 29 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.40 5.85 6.16 -40.82 -0.25 5.60 16 33 H 0.12 1.30 7.93 -51.93 -0.41 0.88 16 34 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -33.86 315.47 -5.74 -39.60 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.35 Total: 1.58 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 0.78 Total: 8.01 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.22 Total: -43.13 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.67 Total: -26.42 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.86 -5.74 -39.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823519035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.929 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds