Wall clock time and date at job start Mon Mar 30 2020 01:10:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52999 * 109.46971 * 2 1
4 4 C 1.50703 * 109.47102 * 240.00337 * 2 1 3
5 5 H 1.07999 * 120.00000 * 239.99519 * 4 2 1
6 6 C 1.37875 * 119.99808 * 59.99744 * 4 2 1
7 7 N 1.31510 * 120.00644 * 0.02562 * 6 4 2
8 8 Si 1.86802 * 119.99695 * 179.97438 * 6 4 2
9 9 H 1.48500 * 109.47237 * 60.00274 * 8 6 4
10 10 H 1.48500 * 109.47301 * 180.02562 * 8 6 4
11 11 H 1.48502 * 109.46975 * 300.00247 * 8 6 4
12 12 C 1.52992 * 109.47212 * 120.00018 * 2 1 3
13 13 N 1.46501 * 109.47447 * 300.00169 * 12 2 1
14 14 C 1.34770 * 120.00246 * 179.97438 * 13 12 2
15 15 O 1.21282 * 120.00373 * 0.02562 * 14 13 12
16 16 C 1.50703 * 120.00146 * 179.97438 * 14 13 12
17 17 N 1.46499 * 109.46938 * 180.02562 * 16 14 13
18 18 C 1.47093 * 125.55889 * 90.00705 * 17 16 14
19 19 C 1.54091 * 103.77776 * 180.02562 * 18 17 16
20 20 O 1.45704 * 104.12991 * 359.92869 * 19 18 17
21 21 C 1.34001 * 125.56070 * 270.01771 * 17 16 14
22 22 O 1.21513 * 123.07229 * 0.03827 * 21 17 16
23 23 H 1.08989 * 109.47254 * 299.99644 * 1 2 3
24 24 H 1.08996 * 109.47219 * 60.00053 * 1 2 3
25 25 H 1.09003 * 109.46649 * 179.97438 * 1 2 3
26 26 H 1.08996 * 109.47559 * 179.97438 * 3 2 1
27 27 H 1.09000 * 109.47198 * 300.00495 * 3 2 1
28 28 H 1.09003 * 109.46964 * 60.00024 * 3 2 1
29 29 H 0.97000 * 120.00501 * 179.97438 * 7 6 4
30 30 H 1.08998 * 109.47568 * 180.02562 * 12 2 1
31 31 H 1.09008 * 109.47440 * 60.00289 * 12 2 1
32 32 H 0.97003 * 119.99445 * 0.02562 * 13 12 2
33 33 H 1.09004 * 109.46863 * 60.00532 * 16 14 13
34 34 H 1.08996 * 109.46918 * 300.00602 * 16 14 13
35 35 H 1.09000 * 110.56724 * 61.43908 * 18 17 16
36 36 H 1.09004 * 110.68940 * 298.64853 * 18 17 16
37 37 H 1.09002 * 110.52360 * 118.62859 * 19 18 17
38 38 H 1.09002 * 110.51975 * 241.22721 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0324 -0.7104 -1.2305
5 1 2.6534 -1.5884 -1.1315
6 6 1.6992 -0.2392 -2.4827
7 7 0.9436 0.8303 -2.6034
8 14 2.3225 -1.1193 -4.0080
9 1 1.8281 -2.5196 -4.0083
10 1 1.8279 -0.4190 -5.2205
11 1 3.8075 -1.1187 -4.0077
12 6 2.0401 -0.7212 1.2492
13 7 1.5517 -0.0307 2.4454
14 6 1.8769 -0.4914 3.6694
15 8 2.5742 -1.4775 3.7808
16 6 1.3750 0.2192 4.9000
17 7 1.8633 -0.4715 6.0961
18 6 3.1257 -0.1842 6.7943
19 6 3.1360 -1.1893 7.9623
20 8 1.8914 -1.9303 7.8049
21 6 1.2330 -1.4682 6.7323
22 8 0.1617 -1.9131 6.3705
23 1 -0.3633 0.5137 0.8899
24 1 -0.3633 0.5138 -0.8899
25 1 -0.3633 -1.0277 -0.0005
26 1 3.1300 1.4426 0.0005
27 1 1.6766 1.9564 -0.8899
28 1 1.6766 1.9563 0.8900
29 1 0.7095 1.1619 -3.4844
30 1 3.1300 -0.7208 1.2495
31 1 1.6768 -1.7490 1.2492
32 1 0.9937 0.7578 2.3564
33 1 0.2850 0.2199 4.8999
34 1 1.7391 1.2466 4.9000
35 1 3.1314 0.8391 7.1696
36 1 3.9775 -0.3541 6.1356
37 1 3.9922 -1.8592 7.8824
38 1 3.1503 -0.6648 8.9176
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000823519035.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:10:56
Heat of formation + Delta-G solvation = -128.953992 kcal
Electronic energy + Delta-G solvation = -21108.021442 eV
Core-core repulsion = 17757.155414 eV
Total energy + Delta-G solvation = -3350.866028 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-42.56419 -40.67158 -38.37572 -38.15659 -36.33705 -35.02305 -32.84962 -31.23478
-29.21404 -27.54786 -27.39449 -26.40303 -24.53795 -22.85363 -21.42981 -20.61161
-18.91095 -18.47361 -17.97016 -17.87315 -17.50783 -16.72959 -16.55540 -16.26722
-15.76837 -15.05796 -15.04129 -14.87609 -14.67840 -14.62866 -14.02597 -13.80536
-13.36851 -13.17672 -13.08244 -12.95980 -12.65444 -12.63483 -12.24052 -12.13847
-11.88220 -11.71010 -11.47884 -11.34077 -11.11488 -10.71217 -10.39653 -9.97475
-9.93910 -8.02597 -6.18286 1.23523 1.43227 1.44862 1.51173 1.59982
1.63123 2.33802 2.49037 2.64899 3.20935 3.37047 3.69229 3.79278
4.02750 4.30156 4.40927 4.42935 4.50972 4.51499 4.72184 4.77179
4.82509 4.98938 5.07172 5.10639 5.20635 5.22100 5.36188 5.58159
5.66987 5.68739 6.16616 6.22747 6.26364 6.43803 6.61534 6.85488
6.86700 7.28272 7.49367 8.95847
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.042144 B = 0.003668 C = 0.003641
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 664.223363 B = 7632.545036 C = 7688.569355
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C 0.050 3.950
3 C -0.119 4.119
4 C -0.532 4.532
5 H 0.041 0.959
6 C 0.030 3.970
7 N -0.897 5.897
8 Si 0.943 3.057
9 H -0.280 1.280
10 H -0.282 1.282
11 H -0.276 1.276
12 C 0.150 3.850
13 N -0.705 5.705
14 C 0.481 3.519
15 O -0.590 6.590
16 C 0.133 3.867
17 N -0.611 5.611
18 C 0.064 3.936
19 C 0.037 3.963
20 O -0.348 6.348
21 C 0.640 3.360
22 O -0.577 6.577
23 H 0.041 0.959
24 H 0.063 0.937
25 H 0.012 0.988
26 H 0.019 0.981
27 H 0.061 0.939
28 H 0.044 0.956
29 H 0.261 0.739
30 H 0.041 0.959
31 H 0.028 0.972
32 H 0.413 0.587
33 H 0.124 0.876
34 H 0.171 0.829
35 H 0.138 0.862
36 H 0.092 0.908
37 H 0.118 0.882
38 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.675 6.554 19.106 20.733
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.050 3.950
3 C -0.176 4.176
4 C -0.571 4.571
5 H 0.060 0.940
6 C -0.170 4.170
7 N -0.536 5.536
8 Si 0.769 3.231
9 H -0.206 1.206
10 H -0.207 1.207
11 H -0.201 1.201
12 C 0.026 3.974
13 N -0.358 5.358
14 C 0.267 3.733
15 O -0.470 6.470
16 C 0.008 3.992
17 N -0.356 5.356
18 C -0.058 4.058
19 C -0.037 4.037
20 O -0.258 6.258
21 C 0.395 3.605
22 O -0.466 6.466
23 H 0.059 0.941
24 H 0.082 0.918
25 H 0.031 0.969
26 H 0.039 0.961
27 H 0.080 0.920
28 H 0.062 0.938
29 H 0.070 0.930
30 H 0.060 0.940
31 H 0.046 0.954
32 H 0.251 0.749
33 H 0.142 0.858
34 H 0.188 0.812
35 H 0.156 0.844
36 H 0.110 0.890
37 H 0.136 0.864
38 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 4.497 5.587 19.016 20.324
hybrid contribution 0.154 -0.592 -1.473 1.595
sum 4.652 4.996 17.543 18.825
Atomic orbital electron populations
1.21686 0.97265 0.98409 1.00603 1.18370 0.93126 0.93416 0.90122
1.21646 0.97987 0.97330 1.00682 1.21252 1.31853 1.12187 0.91759
0.94034 1.25415 0.95131 0.95588 1.00846 1.69885 1.36841 1.23160
1.23679 0.85859 0.78711 0.78730 0.79750 1.20601 1.20688 1.20130
1.21228 0.97062 0.94719 0.84418 1.46068 1.52644 1.32022 1.05056
1.21931 0.80256 0.84862 0.86240 1.90668 1.40541 1.28368 1.87457
1.21362 1.02313 0.97246 0.78243 1.47592 1.23231 1.36525 1.28300
1.23214 0.86050 1.02789 0.93739 1.24775 0.83723 0.93942 1.01235
1.87314 1.36299 1.58354 1.43870 1.18749 0.83598 0.79053 0.79129
1.90987 1.22405 1.63978 1.69228 0.94057 0.91830 0.96925 0.96141
0.92024 0.93762 0.92983 0.94032 0.95367 0.74935 0.85789 0.81213
0.84372 0.88952 0.86424 0.83669
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16
2 C 0.05 2.28 0.50 -52.93 -0.03 2.26 16
3 C -0.12 -4.99 8.08 71.98 0.58 -4.41 16
4 C -0.53 -28.11 8.01 25.60 0.21 -27.90 16
5 H 0.04 2.25 7.74 -2.91 -0.02 2.23 16
6 C 0.03 1.59 5.15 84.65 0.44 2.02 16
7 N -0.90 -47.35 9.35 21.45 0.20 -47.15 16
8 Si 0.94 42.55 29.54 68.60 2.03 44.58 16
9 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16
10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16
11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
12 C 0.15 6.28 4.50 86.38 0.39 6.67 16
13 N -0.71 -22.62 4.96 -463.07 -2.30 -24.92 16
14 C 0.48 15.12 7.90 87.66 0.69 15.81 16
15 O -0.59 -24.30 16.43 -3.04 -0.05 -24.35 16
16 C 0.13 2.65 6.49 85.63 0.56 3.21 16
17 N -0.61 -13.45 2.45 -955.37 -2.34 -15.79 16
18 C 0.06 0.72 7.70 86.64 0.67 1.39 16
19 C 0.04 0.40 8.22 72.35 0.59 0.99 16
20 O -0.35 -8.69 11.11 -50.08 -0.56 -9.25 16
21 C 0.64 19.52 8.85 129.91 1.15 20.67 16
22 O -0.58 -23.30 17.55 19.63 0.34 -22.95 16
23 H 0.04 1.49 6.86 -2.39 -0.02 1.48 16
24 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16
25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16
26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16
27 H 0.06 2.93 6.07 -2.39 -0.01 2.91 16
28 H 0.04 1.48 6.86 -2.39 -0.02 1.47 16
29 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16
30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16
31 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16
32 H 0.41 10.80 6.16 -92.71 -0.57 10.23 16
33 H 0.12 2.40 7.93 -2.38 -0.02 2.38 16
34 H 0.17 1.52 8.14 -2.39 -0.02 1.50 16
35 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16
36 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16
37 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16
38 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16
Total: -1.00 -77.76 315.47 3.65 -74.10
By element:
Atomic # 1 Polarization: 9.32 SS G_CDS: 0.50 Total: 9.83 kcal
Atomic # 6 Polarization: 10.08 SS G_CDS: 5.83 Total: 15.91 kcal
Atomic # 7 Polarization: -83.43 SS G_CDS: -4.44 Total: -87.86 kcal
Atomic # 8 Polarization: -56.29 SS G_CDS: -0.26 Total: -56.55 kcal
Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal
Total: -77.76 3.65 -74.10 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000823519035.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.851 kcal
(2) G-P(sol) polarization free energy of solvation -77.758 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.608 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.103 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.954 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds