Wall clock time and date at job start Mon Mar 30 2020 01:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46971 * 2 1 4 4 C 1.50703 * 109.47102 * 240.00337 * 2 1 3 5 5 H 1.07999 * 120.00000 * 239.99519 * 4 2 1 6 6 C 1.37875 * 119.99808 * 59.99744 * 4 2 1 7 7 N 1.31510 * 120.00644 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99695 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47237 * 60.00274 * 8 6 4 10 10 H 1.48500 * 109.47301 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46975 * 300.00247 * 8 6 4 12 12 C 1.52992 * 109.47212 * 120.00018 * 2 1 3 13 13 N 1.46501 * 109.47447 * 300.00169 * 12 2 1 14 14 C 1.34770 * 120.00246 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00373 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00146 * 179.97438 * 14 13 12 17 17 N 1.46499 * 109.46938 * 180.02562 * 16 14 13 18 18 C 1.47093 * 125.55889 * 90.00705 * 17 16 14 19 19 C 1.54091 * 103.77776 * 180.02562 * 18 17 16 20 20 O 1.45704 * 104.12991 * 359.92869 * 19 18 17 21 21 C 1.34001 * 125.56070 * 270.01771 * 17 16 14 22 22 O 1.21513 * 123.07229 * 0.03827 * 21 17 16 23 23 H 1.08989 * 109.47254 * 299.99644 * 1 2 3 24 24 H 1.08996 * 109.47219 * 60.00053 * 1 2 3 25 25 H 1.09003 * 109.46649 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47559 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47198 * 300.00495 * 3 2 1 28 28 H 1.09003 * 109.46964 * 60.00024 * 3 2 1 29 29 H 0.97000 * 120.00501 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47568 * 180.02562 * 12 2 1 31 31 H 1.09008 * 109.47440 * 60.00289 * 12 2 1 32 32 H 0.97003 * 119.99445 * 0.02562 * 13 12 2 33 33 H 1.09004 * 109.46863 * 60.00532 * 16 14 13 34 34 H 1.08996 * 109.46918 * 300.00602 * 16 14 13 35 35 H 1.09000 * 110.56724 * 61.43908 * 18 17 16 36 36 H 1.09004 * 110.68940 * 298.64853 * 18 17 16 37 37 H 1.09002 * 110.52360 * 118.62859 * 19 18 17 38 38 H 1.09002 * 110.51975 * 241.22721 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.8281 -2.5196 -4.0083 10 1 1.8279 -0.4190 -5.2205 11 1 3.8075 -1.1187 -4.0077 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6694 15 8 2.5742 -1.4775 3.7808 16 6 1.3750 0.2192 4.9000 17 7 1.8633 -0.4715 6.0961 18 6 3.1257 -0.1842 6.7943 19 6 3.1360 -1.1893 7.9623 20 8 1.8914 -1.9303 7.8049 21 6 1.2330 -1.4682 6.7323 22 8 0.1617 -1.9131 6.3705 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 0.7095 1.1619 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6768 -1.7490 1.2492 32 1 0.9937 0.7578 2.3564 33 1 0.2850 0.2199 4.8999 34 1 1.7391 1.2466 4.9000 35 1 3.1314 0.8391 7.1696 36 1 3.9775 -0.3541 6.1356 37 1 3.9922 -1.8592 7.8824 38 1 3.1503 -0.6648 8.9176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823519035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:56 Heat of formation + Delta-G solvation = -128.953992 kcal Electronic energy + Delta-G solvation = -21108.021442 eV Core-core repulsion = 17757.155414 eV Total energy + Delta-G solvation = -3350.866028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.56419 -40.67158 -38.37572 -38.15659 -36.33705 -35.02305 -32.84962 -31.23478 -29.21404 -27.54786 -27.39449 -26.40303 -24.53795 -22.85363 -21.42981 -20.61161 -18.91095 -18.47361 -17.97016 -17.87315 -17.50783 -16.72959 -16.55540 -16.26722 -15.76837 -15.05796 -15.04129 -14.87609 -14.67840 -14.62866 -14.02597 -13.80536 -13.36851 -13.17672 -13.08244 -12.95980 -12.65444 -12.63483 -12.24052 -12.13847 -11.88220 -11.71010 -11.47884 -11.34077 -11.11488 -10.71217 -10.39653 -9.97475 -9.93910 -8.02597 -6.18286 1.23523 1.43227 1.44862 1.51173 1.59982 1.63123 2.33802 2.49037 2.64899 3.20935 3.37047 3.69229 3.79278 4.02750 4.30156 4.40927 4.42935 4.50972 4.51499 4.72184 4.77179 4.82509 4.98938 5.07172 5.10639 5.20635 5.22100 5.36188 5.58159 5.66987 5.68739 6.16616 6.22747 6.26364 6.43803 6.61534 6.85488 6.86700 7.28272 7.49367 8.95847 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042144 B = 0.003668 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.223363 B = 7632.545036 C = 7688.569355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.119 4.119 4 C -0.532 4.532 5 H 0.041 0.959 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.150 3.850 13 N -0.705 5.705 14 C 0.481 3.519 15 O -0.590 6.590 16 C 0.133 3.867 17 N -0.611 5.611 18 C 0.064 3.936 19 C 0.037 3.963 20 O -0.348 6.348 21 C 0.640 3.360 22 O -0.577 6.577 23 H 0.041 0.959 24 H 0.063 0.937 25 H 0.012 0.988 26 H 0.019 0.981 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.261 0.739 30 H 0.041 0.959 31 H 0.028 0.972 32 H 0.413 0.587 33 H 0.124 0.876 34 H 0.171 0.829 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.675 6.554 19.106 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.201 1.201 12 C 0.026 3.974 13 N -0.358 5.358 14 C 0.267 3.733 15 O -0.470 6.470 16 C 0.008 3.992 17 N -0.356 5.356 18 C -0.058 4.058 19 C -0.037 4.037 20 O -0.258 6.258 21 C 0.395 3.605 22 O -0.466 6.466 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.031 0.969 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.251 0.749 33 H 0.142 0.858 34 H 0.188 0.812 35 H 0.156 0.844 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.497 5.587 19.016 20.324 hybrid contribution 0.154 -0.592 -1.473 1.595 sum 4.652 4.996 17.543 18.825 Atomic orbital electron populations 1.21686 0.97265 0.98409 1.00603 1.18370 0.93126 0.93416 0.90122 1.21646 0.97987 0.97330 1.00682 1.21252 1.31853 1.12187 0.91759 0.94034 1.25415 0.95131 0.95588 1.00846 1.69885 1.36841 1.23160 1.23679 0.85859 0.78711 0.78730 0.79750 1.20601 1.20688 1.20130 1.21228 0.97062 0.94719 0.84418 1.46068 1.52644 1.32022 1.05056 1.21931 0.80256 0.84862 0.86240 1.90668 1.40541 1.28368 1.87457 1.21362 1.02313 0.97246 0.78243 1.47592 1.23231 1.36525 1.28300 1.23214 0.86050 1.02789 0.93739 1.24775 0.83723 0.93942 1.01235 1.87314 1.36299 1.58354 1.43870 1.18749 0.83598 0.79053 0.79129 1.90987 1.22405 1.63978 1.69228 0.94057 0.91830 0.96925 0.96141 0.92024 0.93762 0.92983 0.94032 0.95367 0.74935 0.85789 0.81213 0.84372 0.88952 0.86424 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 2 C 0.05 2.28 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -4.99 8.08 71.98 0.58 -4.41 16 4 C -0.53 -28.11 8.01 25.60 0.21 -27.90 16 5 H 0.04 2.25 7.74 -2.91 -0.02 2.23 16 6 C 0.03 1.59 5.15 84.65 0.44 2.02 16 7 N -0.90 -47.35 9.35 21.45 0.20 -47.15 16 8 Si 0.94 42.55 29.54 68.60 2.03 44.58 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.15 6.28 4.50 86.38 0.39 6.67 16 13 N -0.71 -22.62 4.96 -463.07 -2.30 -24.92 16 14 C 0.48 15.12 7.90 87.66 0.69 15.81 16 15 O -0.59 -24.30 16.43 -3.04 -0.05 -24.35 16 16 C 0.13 2.65 6.49 85.63 0.56 3.21 16 17 N -0.61 -13.45 2.45 -955.37 -2.34 -15.79 16 18 C 0.06 0.72 7.70 86.64 0.67 1.39 16 19 C 0.04 0.40 8.22 72.35 0.59 0.99 16 20 O -0.35 -8.69 11.11 -50.08 -0.56 -9.25 16 21 C 0.64 19.52 8.85 129.91 1.15 20.67 16 22 O -0.58 -23.30 17.55 19.63 0.34 -22.95 16 23 H 0.04 1.49 6.86 -2.39 -0.02 1.48 16 24 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 2.93 6.07 -2.39 -0.01 2.91 16 28 H 0.04 1.48 6.86 -2.39 -0.02 1.47 16 29 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.41 10.80 6.16 -92.71 -0.57 10.23 16 33 H 0.12 2.40 7.93 -2.38 -0.02 2.38 16 34 H 0.17 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -77.76 315.47 3.65 -74.10 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.50 Total: 9.83 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 5.83 Total: 15.91 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -4.44 Total: -87.86 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.26 Total: -56.55 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -77.76 3.65 -74.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823519035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.851 kcal (2) G-P(sol) polarization free energy of solvation -77.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds