Wall clock time and date at job start Mon Mar 30 2020 00:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99727 * 2 1 4 4 C 1.52998 * 109.47087 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47062 * 64.99663 * 4 3 2 6 6 C 1.46501 * 119.99882 * 90.00547 * 5 4 3 7 7 C 1.50697 * 109.47319 * 93.23098 * 6 5 4 8 8 H 1.08000 * 119.99899 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99782 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99917 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00325 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47255 * 89.99693 * 11 9 7 13 13 H 1.48506 * 109.47029 * 329.99992 * 11 9 7 14 14 H 1.48500 * 109.47610 * 209.99847 * 11 9 7 15 15 C 1.34775 * 119.99868 * 269.99504 * 5 4 3 16 16 O 1.21280 * 119.99929 * 4.65793 * 15 5 4 17 17 C 1.50700 * 119.99964 * 184.65168 * 15 5 4 18 18 H 1.09007 * 110.89041 * 51.33742 * 17 15 5 19 19 C 1.54769 * 111.01321 * 287.44265 * 17 15 5 20 20 C 1.51679 * 102.47826 * 217.98676 * 19 17 15 21 21 C 1.50697 * 125.77316 * 195.25823 * 20 19 17 22 22 N 1.27646 * 108.46031 * 15.27704 * 20 19 17 23 23 O 1.41377 * 113.17215 * 0.32298 * 22 20 19 24 24 H 1.09002 * 109.47534 * 60.00737 * 1 2 3 25 25 H 1.09003 * 109.46644 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47359 * 300.00195 * 1 2 3 27 27 H 1.09003 * 109.47561 * 59.99575 * 3 2 1 28 28 H 1.09005 * 109.46749 * 300.00108 * 3 2 1 29 29 H 1.09003 * 109.46826 * 304.99485 * 4 3 2 30 30 H 1.09000 * 109.46888 * 184.99584 * 4 3 2 31 31 H 1.09003 * 109.46880 * 333.22763 * 6 5 4 32 32 H 1.08998 * 109.46772 * 213.23558 * 6 5 4 33 33 H 0.97001 * 119.99868 * 179.97438 * 10 9 7 34 34 H 1.09001 * 110.80553 * 336.23406 * 19 17 15 35 35 H 1.09001 * 110.80892 * 99.54397 * 19 17 15 36 36 H 1.08998 * 109.47440 * 89.99765 * 21 20 19 37 37 H 1.08997 * 109.47191 * 210.00054 * 21 20 19 38 38 H 1.09007 * 109.46819 * 329.99784 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2864 1.4007 -2.4148 7 6 5.7600 1.7154 -2.4276 8 1 6.4012 1.3306 -1.6483 9 6 6.2900 2.4936 -3.4348 10 7 7.5762 2.7679 -3.4463 11 14 5.1812 3.1586 -4.7831 12 1 4.6491 4.4843 -4.3775 13 1 4.0528 2.2188 -5.0043 14 1 5.9602 3.3012 -6.0393 15 6 4.0949 -0.7755 -1.3354 16 8 3.7577 -1.4730 -0.4024 17 6 4.6471 -1.4069 -2.5874 18 1 5.5939 -0.9465 -2.8699 19 6 3.6243 -1.3284 -3.7462 20 6 3.8147 -2.6624 -4.4424 21 6 3.3188 -3.0154 -5.8210 22 7 4.4656 -3.4358 -3.6630 23 8 4.7923 -2.8330 -2.4266 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.8514 0.5684 0.8410 30 1 3.9784 2.1766 0.0888 31 1 3.7171 2.3285 -2.3574 32 1 4.0207 0.8674 -3.3276 33 1 7.9491 3.3151 -4.1551 34 1 2.6090 -1.2341 -3.3608 35 1 3.8607 -0.5015 -4.4160 36 1 4.0821 -2.7637 -6.5572 37 1 3.1064 -4.0834 -5.8683 38 1 2.4089 -2.4542 -6.0345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826015811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:19 Heat of formation + Delta-G solvation = -51.317472 kcal Electronic energy + Delta-G solvation = -21927.339481 eV Core-core repulsion = 18579.840024 eV Total energy + Delta-G solvation = -3347.499456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.28328 -38.63739 -37.32265 -35.17598 -33.55485 -32.69461 -31.25660 -29.44839 -28.29016 -27.69806 -26.15618 -24.26208 -22.79105 -21.93144 -19.72111 -18.52752 -17.27376 -16.85757 -16.37412 -15.93969 -15.76225 -15.37356 -15.19594 -14.76123 -14.29803 -13.92581 -13.84120 -13.12352 -13.02438 -12.77405 -12.59939 -12.49262 -12.23422 -12.19970 -11.87175 -11.75496 -11.58113 -11.20956 -11.08117 -10.85658 -10.71586 -10.43772 -10.28391 -9.73761 -9.47468 -9.38631 -8.82833 -8.80998 -7.83030 -6.31458 -4.34547 2.02893 3.03319 3.06600 3.12361 3.17187 3.32662 3.84831 4.06856 4.15096 4.29833 4.81807 4.85758 4.97446 5.10364 5.26028 5.33776 5.35431 5.44199 5.48416 5.53092 5.54008 5.57810 5.60810 5.73208 5.82629 5.94578 6.03684 6.24176 6.26400 6.33504 6.53745 7.20171 7.32047 7.43304 7.65598 8.02493 8.29972 8.74311 8.89309 9.26708 10.80941 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.009304 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.744704 B = 3008.868048 C = 4413.875265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.043 3.957 4 C 0.124 3.876 5 N -0.587 5.587 6 C 0.201 3.799 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.078 3.922 10 N -0.886 5.886 11 Si 0.870 3.130 12 H -0.273 1.273 13 H -0.264 1.264 14 H -0.282 1.282 15 C 0.530 3.470 16 O -0.526 6.526 17 C 0.030 3.970 18 H 0.129 0.871 19 C -0.141 4.141 20 C 0.078 3.922 21 C -0.083 4.083 22 N -0.296 5.296 23 O -0.175 6.175 24 H 0.034 0.966 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.032 0.968 32 H 0.035 0.965 33 H 0.268 0.732 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.764 -2.397 -2.734 13.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C -0.035 4.035 4 C 0.000 4.000 5 N -0.320 5.320 6 C 0.080 3.920 7 C -0.586 4.586 8 H 0.099 0.901 9 C -0.127 4.127 10 N -0.523 5.523 11 Si 0.696 3.304 12 H -0.198 1.198 13 H -0.189 1.189 14 H -0.207 1.207 15 C 0.315 3.685 16 O -0.401 6.401 17 C -0.032 4.032 18 H 0.146 0.854 19 C -0.180 4.180 20 C -0.115 4.115 21 C -0.141 4.141 22 N -0.037 5.037 23 O -0.193 6.193 24 H 0.053 0.947 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.166 -3.916 -1.996 12.935 hybrid contribution -0.873 1.918 -0.868 2.279 sum -13.039 -1.998 -2.863 13.498 Atomic orbital electron populations 1.22683 0.82485 1.02218 0.99188 1.88164 1.18233 1.27051 1.95153 1.23076 0.95355 0.85218 0.99812 1.21379 0.91045 0.99642 0.87884 1.47655 1.65512 1.05225 1.13581 1.19972 0.97481 0.90643 0.83889 1.21417 0.91524 1.33383 1.12305 0.90138 1.24898 0.94887 0.95387 0.97503 1.69892 1.11576 1.37313 1.33486 0.86958 0.81042 0.80228 0.82151 1.19816 1.18897 1.20726 1.19672 0.78227 0.82514 0.88043 1.90676 1.48582 1.61671 1.39217 1.23636 1.00957 0.84231 0.94351 0.85385 1.23102 1.01537 0.97232 0.96179 1.26216 0.93881 0.94047 0.97374 1.20389 1.01950 1.03217 0.88552 1.77786 1.11397 1.21364 0.93135 1.91317 1.87070 1.16481 1.24453 0.94730 0.90131 0.94633 0.92959 0.93391 0.89781 0.88426 0.95042 0.94776 0.92213 0.88228 0.86844 0.89235 0.90029 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.31 9.30 -47.90 -0.45 -6.76 16 3 C 0.04 0.65 6.28 37.16 0.23 0.89 16 4 C 0.12 2.17 5.83 -4.04 -0.02 2.14 16 5 N -0.59 -11.86 2.45 -175.06 -0.43 -12.28 16 6 C 0.20 4.18 3.95 -5.19 -0.02 4.16 16 7 C -0.55 -13.76 9.16 -34.44 -0.32 -14.07 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.89 -24.88 13.96 55.43 0.77 -24.11 16 11 Si 0.87 18.57 27.47 -169.99 -4.67 13.90 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.26 -5.13 6.54 56.52 0.37 -4.76 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.53 11.57 6.67 -10.99 -0.07 11.50 16 16 O -0.53 -12.84 15.19 -20.90 -0.32 -13.16 16 17 C 0.03 0.61 3.34 -26.95 -0.09 0.52 16 18 H 0.13 2.78 7.30 -51.93 -0.38 2.40 16 19 C -0.14 -2.31 5.45 -26.47 -0.14 -2.45 16 20 C 0.08 1.19 7.45 -78.58 -0.59 0.60 16 21 C -0.08 -0.81 10.49 36.00 0.38 -0.43 16 22 N -0.30 -5.56 12.45 35.65 0.44 -5.11 16 23 O -0.17 -3.86 11.84 -30.14 -0.36 -4.21 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.56 7.49 -51.93 -0.39 1.17 16 30 H 0.10 1.57 8.07 -51.93 -0.42 1.15 16 31 H 0.03 0.62 7.48 -51.93 -0.39 0.24 16 32 H 0.03 0.68 3.67 -51.93 -0.19 0.49 16 33 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.10 1.57 7.90 -51.93 -0.41 1.16 16 35 H 0.11 1.72 6.69 -51.93 -0.35 1.37 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -32.85 318.62 -5.32 -38.17 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.50 Total: 2.51 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 0.37 Total: 6.26 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.79 Total: -41.51 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.12 Total: -24.13 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.67 Total: 13.90 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.85 -5.32 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826015811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.146 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds