Wall clock time and date at job start Mon Mar 30 2020 00:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99727 * 2 1 4 4 C 1.52998 * 109.47087 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47062 * 64.99663 * 4 3 2 6 6 C 1.46501 * 119.99882 * 90.00547 * 5 4 3 7 7 C 1.50697 * 109.47319 * 93.23098 * 6 5 4 8 8 H 1.08000 * 119.99899 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99782 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99917 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00325 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47255 * 89.99693 * 11 9 7 13 13 H 1.48506 * 109.47029 * 329.99992 * 11 9 7 14 14 H 1.48500 * 109.47610 * 209.99847 * 11 9 7 15 15 C 1.34775 * 119.99868 * 269.99504 * 5 4 3 16 16 O 1.21280 * 119.99929 * 4.65793 * 15 5 4 17 17 C 1.50700 * 119.99964 * 184.65168 * 15 5 4 18 18 H 1.09007 * 110.89041 * 51.33742 * 17 15 5 19 19 C 1.54769 * 111.01321 * 287.44265 * 17 15 5 20 20 C 1.51679 * 102.47826 * 217.98676 * 19 17 15 21 21 C 1.50697 * 125.77316 * 195.25823 * 20 19 17 22 22 N 1.27646 * 108.46031 * 15.27704 * 20 19 17 23 23 O 1.41377 * 113.17215 * 0.32298 * 22 20 19 24 24 H 1.09002 * 109.47534 * 60.00737 * 1 2 3 25 25 H 1.09003 * 109.46644 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47359 * 300.00195 * 1 2 3 27 27 H 1.09003 * 109.47561 * 59.99575 * 3 2 1 28 28 H 1.09005 * 109.46749 * 300.00108 * 3 2 1 29 29 H 1.09003 * 109.46826 * 304.99485 * 4 3 2 30 30 H 1.09000 * 109.46888 * 184.99584 * 4 3 2 31 31 H 1.09003 * 109.46880 * 333.22763 * 6 5 4 32 32 H 1.08998 * 109.46772 * 213.23558 * 6 5 4 33 33 H 0.97001 * 119.99868 * 179.97438 * 10 9 7 34 34 H 1.09001 * 110.80553 * 336.23406 * 19 17 15 35 35 H 1.09001 * 110.80892 * 99.54397 * 19 17 15 36 36 H 1.08998 * 109.47440 * 89.99765 * 21 20 19 37 37 H 1.08997 * 109.47191 * 210.00054 * 21 20 19 38 38 H 1.09007 * 109.46819 * 329.99784 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2864 1.4007 -2.4148 7 6 5.7600 1.7154 -2.4276 8 1 6.4012 1.3306 -1.6483 9 6 6.2900 2.4936 -3.4348 10 7 7.5762 2.7679 -3.4463 11 14 5.1812 3.1586 -4.7831 12 1 4.6491 4.4843 -4.3775 13 1 4.0528 2.2188 -5.0043 14 1 5.9602 3.3012 -6.0393 15 6 4.0949 -0.7755 -1.3354 16 8 3.7577 -1.4730 -0.4024 17 6 4.6471 -1.4069 -2.5874 18 1 5.5939 -0.9465 -2.8699 19 6 3.6243 -1.3284 -3.7462 20 6 3.8147 -2.6624 -4.4424 21 6 3.3188 -3.0154 -5.8210 22 7 4.4656 -3.4358 -3.6630 23 8 4.7923 -2.8330 -2.4266 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.8514 0.5684 0.8410 30 1 3.9784 2.1766 0.0888 31 1 3.7171 2.3285 -2.3574 32 1 4.0207 0.8674 -3.3276 33 1 7.9491 3.3151 -4.1551 34 1 2.6090 -1.2341 -3.3608 35 1 3.8607 -0.5015 -4.4160 36 1 4.0821 -2.7637 -6.5572 37 1 3.1064 -4.0834 -5.8683 38 1 2.4089 -2.4542 -6.0345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826015811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:18 Heat of formation + Delta-G solvation = -74.362528 kcal Electronic energy + Delta-G solvation = -21928.338789 eV Core-core repulsion = 18579.840024 eV Total energy + Delta-G solvation = -3348.498765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.78037 -40.12127 -38.58289 -36.86100 -34.87617 -34.58058 -32.71031 -30.90679 -29.41722 -29.25679 -27.22633 -25.72421 -24.49499 -23.38515 -21.00016 -20.08811 -19.15062 -18.44185 -17.77334 -17.27077 -17.08652 -16.77081 -16.51543 -16.26539 -15.78731 -15.33127 -15.12222 -14.63113 -14.39420 -14.15444 -13.99065 -13.75885 -13.47882 -13.38864 -13.26571 -13.07954 -12.97287 -12.59696 -12.56101 -12.41052 -12.01648 -11.93780 -11.72479 -11.58630 -10.99537 -10.76403 -10.55747 -10.37597 -9.49702 -8.28857 -6.38873 0.81072 1.42477 1.44226 1.46571 1.54464 1.75263 2.36212 2.40226 2.96402 3.03766 3.05017 3.37077 3.57928 3.60667 3.98036 4.14247 4.21600 4.37155 4.40694 4.50942 4.52978 4.54774 4.59011 4.70033 4.73404 4.76814 4.79320 4.83608 4.87528 4.95604 5.29482 5.42050 5.64237 6.15124 6.30856 6.35046 6.52300 6.68290 7.18666 7.30309 8.87546 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.009304 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.744704 B = 3008.868048 C = 4413.875265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.050 3.950 4 C 0.114 3.886 5 N -0.585 5.585 6 C 0.209 3.791 7 C -0.549 4.549 8 H 0.024 0.976 9 C 0.017 3.983 10 N -0.944 5.944 11 Si 0.941 3.059 12 H -0.264 1.264 13 H -0.221 1.221 14 H -0.287 1.287 15 C 0.525 3.475 16 O -0.561 6.561 17 C 0.025 3.975 18 H 0.103 0.897 19 C -0.136 4.136 20 C 0.107 3.893 21 C -0.083 4.083 22 N -0.333 5.333 23 O -0.223 6.223 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.269 0.731 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.268 -1.380 -5.349 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.027 4.027 4 C -0.008 4.008 5 N -0.317 5.317 6 C 0.088 3.912 7 C -0.587 4.587 8 H 0.042 0.958 9 C -0.182 4.182 10 N -0.583 5.583 11 Si 0.763 3.237 12 H -0.189 1.189 13 H -0.144 1.144 14 H -0.213 1.213 15 C 0.311 3.689 16 O -0.439 6.439 17 C -0.037 4.037 18 H 0.121 0.879 19 C -0.175 4.175 20 C -0.086 4.086 21 C -0.141 4.141 22 N -0.079 5.079 23 O -0.237 6.237 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.693 -2.886 -4.565 16.596 hybrid contribution 0.270 1.579 -0.015 1.602 sum -15.423 -1.306 -4.580 16.142 Atomic orbital electron populations 1.22856 0.80255 1.02938 1.00865 1.88117 1.20801 1.28254 1.95510 1.23019 0.92789 0.85017 1.01893 1.21614 0.93720 0.99407 0.86105 1.47737 1.64788 1.04759 1.14375 1.19907 0.94569 0.91866 0.84891 1.21528 0.93431 1.32904 1.10840 0.95751 1.25900 0.96357 0.95491 1.00443 1.70080 1.14390 1.38873 1.34927 0.85820 0.79779 0.80478 0.77669 1.18882 1.14354 1.21297 1.19999 0.77805 0.82933 0.88152 1.90641 1.50384 1.62481 1.40435 1.23527 1.00952 0.83861 0.95379 0.87918 1.23163 1.00795 0.98656 0.94935 1.27133 0.90642 0.92446 0.98401 1.20742 1.03720 1.04611 0.84989 1.77831 1.15122 1.22126 0.92848 1.91279 1.88060 1.17022 1.27308 0.93123 0.90033 0.92759 0.90040 0.91898 0.91838 0.87296 0.92456 0.92775 0.92245 0.86923 0.84711 0.87123 0.88896 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.35 9.30 -136.87 -1.27 -14.63 16 3 C 0.05 1.39 6.28 71.98 0.45 1.84 16 4 C 0.11 3.96 5.83 86.38 0.50 4.46 16 5 N -0.58 -23.52 2.45 -826.15 -2.02 -25.54 16 6 C 0.21 8.30 3.95 85.63 0.34 8.64 16 7 C -0.55 -28.03 9.16 25.60 0.23 -27.79 16 8 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 9 C 0.02 0.88 5.47 84.65 0.46 1.34 16 10 N -0.94 -54.63 13.96 21.45 0.30 -54.33 16 11 Si 0.94 36.20 27.47 68.60 1.88 38.09 16 12 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 13 H -0.22 -6.93 6.54 99.48 0.65 -6.28 16 14 H -0.29 -11.29 7.11 99.48 0.71 -10.59 16 15 C 0.53 23.45 6.67 87.66 0.58 24.03 16 16 O -0.56 -28.47 15.19 22.27 0.34 -28.13 16 17 C 0.02 1.03 3.34 30.45 0.10 1.13 16 18 H 0.10 4.69 7.30 -2.38 -0.02 4.68 16 19 C -0.14 -4.12 5.45 30.76 0.17 -3.96 16 20 C 0.11 2.96 7.45 46.89 0.35 3.31 16 21 C -0.08 -1.23 10.49 71.23 0.75 -0.48 16 22 N -0.33 -12.47 12.45 -40.62 -0.51 -12.97 16 23 O -0.22 -10.22 11.84 -20.33 -0.24 -10.46 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.55 8.14 -2.38 -0.02 1.54 16 29 H 0.06 2.44 7.49 -2.39 -0.02 2.42 16 30 H 0.11 3.44 8.07 -2.39 -0.02 3.42 16 31 H 0.06 2.04 7.48 -2.39 -0.02 2.02 16 32 H 0.05 1.96 3.67 -2.39 -0.01 1.95 16 33 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.11 3.19 7.90 -2.39 -0.02 3.17 16 35 H 0.14 3.49 6.69 -2.39 -0.02 3.48 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -77.41 318.62 4.67 -72.73 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.00 Total: 20.85 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 5.19 Total: 14.39 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -2.23 Total: -92.84 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -1.18 Total: -53.22 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 1.88 Total: 38.09 kcal Total: -77.41 4.67 -72.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826015811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.628 kcal (2) G-P(sol) polarization free energy of solvation -77.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds