Wall clock time and date at job start Mon Mar 30 2020 00:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47349 * 295.00332 * 4 3 2 6 6 C 1.46501 * 119.99886 * 89.99708 * 5 4 3 7 7 C 1.50696 * 109.47358 * 90.00396 * 6 5 4 8 8 H 1.08008 * 119.99951 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00466 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00367 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99769 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47115 * 89.99472 * 11 9 7 13 13 H 1.48496 * 109.47138 * 209.99689 * 11 9 7 14 14 H 1.48505 * 109.47300 * 329.99894 * 11 9 7 15 15 C 1.34772 * 119.99888 * 270.00031 * 5 4 3 16 16 O 1.21284 * 120.00062 * 179.97438 * 15 5 4 17 17 C 1.50701 * 120.00285 * 359.97438 * 15 5 4 18 18 H 1.08999 * 110.88783 * 304.29861 * 17 15 5 19 19 C 1.54767 * 111.01251 * 68.19552 * 17 15 5 20 20 C 1.51685 * 102.47981 * 142.01622 * 19 17 15 21 21 C 1.50693 * 125.77079 * 164.74419 * 20 19 17 22 22 N 1.27644 * 108.45910 * 344.72131 * 20 19 17 23 23 O 1.41439 * 113.19102 * 359.70904 * 22 20 19 24 24 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 25 25 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 26 26 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 28 28 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 29 29 H 1.09008 * 109.47017 * 55.00070 * 4 3 2 30 30 H 1.08998 * 109.47192 * 175.00046 * 4 3 2 31 31 H 1.09008 * 109.46935 * 210.00197 * 6 5 4 32 32 H 1.09002 * 109.47658 * 329.99880 * 6 5 4 33 33 H 0.97001 * 120.00197 * 180.02562 * 10 9 7 34 34 H 1.09003 * 110.80745 * 260.26165 * 19 17 15 35 35 H 1.09000 * 110.80870 * 23.76946 * 19 17 15 36 36 H 1.08994 * 109.47057 * 90.00156 * 21 20 19 37 37 H 1.09003 * 109.47058 * 209.99943 * 21 20 19 38 38 H 1.09000 * 109.47422 * 329.99634 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9768 0.5638 1.2508 6 6 4.1063 -0.8927 1.3401 7 6 5.5017 -1.2983 0.9410 8 1 6.2202 -0.5464 0.6496 9 6 5.8614 -2.6293 0.9480 10 7 7.0790 -2.9834 0.5992 11 14 4.6186 -3.9299 1.4514 12 1 3.8743 -4.3936 0.2529 13 1 5.3277 -5.0793 2.0690 14 1 3.6659 -3.3509 2.4324 15 6 4.2635 1.3327 2.3200 16 8 4.6283 0.8188 3.3562 17 6 4.1307 2.8310 2.2280 18 1 4.7263 3.2241 1.4041 19 6 2.6470 3.2492 2.0890 20 6 2.5814 4.5093 2.9309 21 6 1.4705 5.5272 2.9079 22 7 3.6261 4.5615 3.6624 23 8 4.4933 3.4600 3.4744 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 3.8508 0.5684 -0.8428 30 1 3.9785 2.1765 -0.0902 31 1 3.9139 -1.2124 2.3644 32 1 3.3858 -1.3633 0.6712 33 1 7.3319 -3.9198 0.6037 34 1 2.4013 3.4650 1.0493 35 1 1.9885 2.4797 2.4919 36 1 0.7118 5.2535 3.6410 37 1 1.8733 6.5103 3.1516 38 1 1.0228 5.5541 1.9144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826015812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:22 Heat of formation + Delta-G solvation = -41.065827 kcal Electronic energy + Delta-G solvation = -21781.935341 eV Core-core repulsion = 18434.880429 eV Total energy + Delta-G solvation = -3347.054912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69810 -38.72647 -37.67296 -35.14763 -33.89089 -32.75478 -31.21909 -29.73688 -28.62378 -27.82581 -26.23290 -24.47875 -22.97169 -22.03865 -19.97172 -18.65302 -17.52156 -16.91483 -16.87685 -16.27643 -15.62221 -15.44283 -15.35459 -14.90151 -14.43824 -14.23442 -13.70283 -13.58091 -13.24478 -13.00990 -12.78257 -12.60828 -12.34789 -12.11744 -12.02155 -11.84098 -11.69601 -11.61883 -11.08296 -10.90237 -10.69360 -10.45284 -10.06799 -9.74570 -9.55801 -9.49482 -8.98964 -8.54140 -7.81427 -6.04432 -4.02920 1.66921 2.75354 3.10465 3.32561 3.39515 3.45551 3.64901 3.82962 3.88247 4.37552 4.42854 4.45053 4.58338 4.86258 5.03910 5.09843 5.12430 5.13972 5.22391 5.24854 5.29868 5.33750 5.37858 5.38261 5.46862 5.50313 5.65619 5.87424 6.04985 6.79363 7.01894 7.18930 7.23767 7.32865 7.65852 8.11680 8.48682 8.80471 8.98302 9.55865 11.08957 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.006376 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.025505 B = 4390.299120 C = 5339.384720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.026 3.974 4 C 0.106 3.894 5 N -0.577 5.577 6 C 0.221 3.779 7 C -0.530 4.530 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.898 5.898 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.264 1.264 15 C 0.511 3.489 16 O -0.511 6.511 17 C 0.025 3.975 18 H 0.109 0.891 19 C -0.146 4.146 20 C 0.076 3.924 21 C -0.084 4.084 22 N -0.291 5.291 23 O -0.166 6.166 24 H 0.036 0.964 25 H 0.038 0.962 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.264 0.736 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.972 15.042 -3.494 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.052 4.052 4 C -0.018 4.018 5 N -0.310 5.310 6 C 0.101 3.899 7 C -0.569 4.569 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.537 5.537 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.188 1.188 15 C 0.294 3.706 16 O -0.386 6.386 17 C -0.038 4.038 18 H 0.127 0.873 19 C -0.186 4.186 20 C -0.118 4.118 21 C -0.142 4.142 22 N -0.032 5.032 23 O -0.184 6.184 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.803 14.880 -2.052 21.803 hybrid contribution -1.025 -1.081 -0.657 1.628 sum -16.828 13.799 -2.709 21.930 Atomic orbital electron populations 1.22725 0.81809 1.02728 0.99333 1.88067 1.18913 1.27051 1.95199 1.23609 0.95255 0.85817 1.00479 1.21626 0.91293 0.99329 0.89596 1.47784 1.64555 1.08957 1.09713 1.19742 0.97745 0.74127 0.98295 1.21347 0.96166 0.93644 1.45720 0.90813 1.24819 0.95200 0.98332 0.94528 1.69897 1.18225 1.17279 1.48285 0.86857 0.81872 0.81673 0.79433 1.20017 1.21071 1.18825 1.19703 0.79415 0.86711 0.84721 1.90736 1.44791 1.73819 1.29221 1.23639 0.95096 0.94806 0.90254 0.87346 1.23437 0.96890 0.95697 1.02545 1.26275 0.94898 0.95808 0.94845 1.20409 0.93827 0.95874 1.04075 1.77876 1.02307 1.04918 1.18085 1.91438 1.50190 1.39028 1.37732 0.94494 0.94384 0.89751 0.92598 0.92456 0.88148 0.89918 0.94411 0.94030 0.92602 0.87107 0.87381 0.89290 0.89714 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.37 -5.46 9.53 -35.23 -0.34 -5.79 16 3 C 0.03 0.30 5.36 37.16 0.20 0.50 16 4 C 0.11 1.54 5.34 -4.04 -0.02 1.52 16 5 N -0.58 -11.72 2.42 -175.05 -0.42 -12.14 16 6 C 0.22 5.49 4.05 -5.20 -0.02 5.47 16 7 C -0.53 -15.45 9.94 -34.44 -0.34 -15.79 16 8 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 9 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 10 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 11 Si 0.87 22.09 27.47 -169.99 -4.67 17.42 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 15 C 0.51 10.78 7.03 -10.99 -0.08 10.70 16 16 O -0.51 -13.54 16.17 -13.28 -0.21 -13.75 16 17 C 0.02 0.39 3.24 -26.95 -0.09 0.31 16 18 H 0.11 1.48 7.22 -51.93 -0.38 1.11 16 19 C -0.15 -1.61 4.23 -26.47 -0.11 -1.73 16 20 C 0.08 0.82 7.45 -78.58 -0.59 0.24 16 21 C -0.08 -0.49 10.49 36.00 0.38 -0.11 16 22 N -0.29 -4.48 12.45 35.65 0.44 -4.03 16 23 O -0.17 -3.17 11.84 -30.23 -0.36 -3.53 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.59 4.03 -51.93 -0.21 0.38 16 29 H 0.10 1.58 8.07 -51.92 -0.42 1.16 16 30 H 0.08 0.92 6.15 -51.93 -0.32 0.60 16 31 H 0.04 1.03 6.48 -51.92 -0.34 0.69 16 32 H 0.04 1.00 6.54 -51.93 -0.34 0.66 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 34 H 0.11 0.80 6.40 -51.93 -0.33 0.47 16 35 H 0.11 1.26 6.85 -51.93 -0.36 0.90 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -38.62 313.30 -4.95 -43.57 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -5.24 Total: -3.73 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 0.35 Total: 4.62 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.79 Total: -43.53 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.91 Total: -23.07 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -38.62 -4.95 -43.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826015812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.508 kcal (2) G-P(sol) polarization free energy of solvation -38.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds