Wall clock time and date at job start Mon Mar 30 2020 00:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47349 * 295.00332 * 4 3 2 6 6 C 1.46501 * 119.99886 * 89.99708 * 5 4 3 7 7 C 1.50696 * 109.47358 * 90.00396 * 6 5 4 8 8 H 1.08008 * 119.99951 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00466 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00367 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99769 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47115 * 89.99472 * 11 9 7 13 13 H 1.48496 * 109.47138 * 209.99689 * 11 9 7 14 14 H 1.48505 * 109.47300 * 329.99894 * 11 9 7 15 15 C 1.34772 * 119.99888 * 270.00031 * 5 4 3 16 16 O 1.21284 * 120.00062 * 179.97438 * 15 5 4 17 17 C 1.50701 * 120.00285 * 359.97438 * 15 5 4 18 18 H 1.08999 * 110.88783 * 304.29861 * 17 15 5 19 19 C 1.54767 * 111.01251 * 68.19552 * 17 15 5 20 20 C 1.51685 * 102.47981 * 142.01622 * 19 17 15 21 21 C 1.50693 * 125.77079 * 164.74419 * 20 19 17 22 22 N 1.27644 * 108.45910 * 344.72131 * 20 19 17 23 23 O 1.41439 * 113.19102 * 359.70904 * 22 20 19 24 24 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 25 25 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 26 26 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 28 28 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 29 29 H 1.09008 * 109.47017 * 55.00070 * 4 3 2 30 30 H 1.08998 * 109.47192 * 175.00046 * 4 3 2 31 31 H 1.09008 * 109.46935 * 210.00197 * 6 5 4 32 32 H 1.09002 * 109.47658 * 329.99880 * 6 5 4 33 33 H 0.97001 * 120.00197 * 180.02562 * 10 9 7 34 34 H 1.09003 * 110.80745 * 260.26165 * 19 17 15 35 35 H 1.09000 * 110.80870 * 23.76946 * 19 17 15 36 36 H 1.08994 * 109.47057 * 90.00156 * 21 20 19 37 37 H 1.09003 * 109.47058 * 209.99943 * 21 20 19 38 38 H 1.09000 * 109.47422 * 329.99634 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9768 0.5638 1.2508 6 6 4.1063 -0.8927 1.3401 7 6 5.5017 -1.2983 0.9410 8 1 6.2202 -0.5464 0.6496 9 6 5.8614 -2.6293 0.9480 10 7 7.0790 -2.9834 0.5992 11 14 4.6186 -3.9299 1.4514 12 1 3.8743 -4.3936 0.2529 13 1 5.3277 -5.0793 2.0690 14 1 3.6659 -3.3509 2.4324 15 6 4.2635 1.3327 2.3200 16 8 4.6283 0.8188 3.3562 17 6 4.1307 2.8310 2.2280 18 1 4.7263 3.2241 1.4041 19 6 2.6470 3.2492 2.0890 20 6 2.5814 4.5093 2.9309 21 6 1.4705 5.5272 2.9079 22 7 3.6261 4.5615 3.6624 23 8 4.4933 3.4600 3.4744 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 3.8508 0.5684 -0.8428 30 1 3.9785 2.1765 -0.0902 31 1 3.9139 -1.2124 2.3644 32 1 3.3858 -1.3633 0.6712 33 1 7.3319 -3.9198 0.6037 34 1 2.4013 3.4650 1.0493 35 1 1.9885 2.4797 2.4919 36 1 0.7118 5.2535 3.6410 37 1 1.8733 6.5103 3.1516 38 1 1.0228 5.5541 1.9144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826015812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:21 Heat of formation + Delta-G solvation = -71.513667 kcal Electronic energy + Delta-G solvation = -21783.255658 eV Core-core repulsion = 18434.880429 eV Total energy + Delta-G solvation = -3348.375229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.92708 -40.08931 -38.77177 -36.72463 -34.90071 -34.86575 -32.64698 -30.96726 -29.59546 -29.26194 -27.08995 -25.95036 -24.09554 -23.83347 -20.93846 -20.09620 -19.18905 -18.71906 -17.96680 -17.35474 -17.06720 -16.66777 -16.42249 -16.26518 -15.80512 -15.46018 -15.17597 -14.65463 -14.52591 -14.24948 -13.82708 -13.76277 -13.54156 -13.49404 -13.23318 -13.06342 -12.95777 -12.71964 -12.58370 -12.43354 -12.12670 -11.89465 -11.77891 -11.59333 -11.03556 -10.83133 -10.44283 -10.41372 -9.53522 -8.35845 -6.40434 0.80554 1.29782 1.33441 1.41871 1.45669 1.65281 2.29919 2.35238 2.93583 2.95874 3.00380 3.27384 3.44208 3.54891 3.78074 4.12135 4.21284 4.31956 4.38229 4.46339 4.51535 4.59437 4.67194 4.73760 4.77385 4.83113 4.89348 4.92979 4.95306 4.96384 5.32099 5.43859 5.53058 6.19273 6.29876 6.35736 6.57103 6.60476 7.13696 7.27243 8.81192 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.006376 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.025505 B = 4390.299120 C = 5339.384720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.029 3.971 4 C 0.093 3.907 5 N -0.579 5.579 6 C 0.236 3.764 7 C -0.539 4.539 8 H 0.030 0.970 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.946 3.054 12 H -0.249 1.249 13 H -0.281 1.281 14 H -0.261 1.261 15 C 0.501 3.499 16 O -0.584 6.584 17 C 0.027 3.973 18 H 0.132 0.868 19 C -0.139 4.139 20 C 0.109 3.891 21 C -0.085 4.085 22 N -0.336 5.336 23 O -0.227 6.227 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.009 0.991 32 H 0.057 0.943 33 H 0.269 0.731 34 H 0.164 0.836 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.992 16.875 -5.162 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.048 4.048 4 C -0.029 4.029 5 N -0.310 5.310 6 C 0.114 3.886 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.769 3.231 12 H -0.173 1.173 13 H -0.206 1.206 14 H -0.185 1.185 15 C 0.287 3.713 16 O -0.464 6.464 17 C -0.035 4.035 18 H 0.149 0.851 19 C -0.178 4.178 20 C -0.084 4.084 21 C -0.142 4.142 22 N -0.082 5.082 23 O -0.240 6.240 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.182 0.818 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.839 16.734 -3.784 26.229 hybrid contribution 0.196 -1.542 -0.198 1.567 sum -19.644 15.192 -3.982 25.150 Atomic orbital electron populations 1.22888 0.79742 1.03201 1.01151 1.87996 1.21322 1.28920 1.95625 1.23663 0.92174 0.85485 1.03429 1.22095 0.94431 1.00339 0.86022 1.47817 1.64050 1.07325 1.11819 1.19268 0.95218 0.77637 0.96485 1.21597 0.97580 0.93070 1.45495 0.95177 1.25798 0.97366 1.00958 0.94348 1.70045 1.20498 1.18151 1.49740 0.85735 0.79216 0.78233 0.79930 1.17258 1.20608 1.18529 1.20714 0.77712 0.89190 0.83647 1.90682 1.48043 1.75690 1.31980 1.23626 0.99195 0.90370 0.90340 0.85098 1.23569 0.93042 0.95480 1.05716 1.27189 0.94090 0.95605 0.91531 1.20763 0.92125 0.94269 1.07036 1.77954 1.04446 1.04574 1.21235 1.91404 1.52547 1.40873 1.39206 0.93274 0.91808 0.90198 0.87934 0.90781 0.89838 0.86176 0.97269 0.92508 0.92231 0.81819 0.87457 0.87654 0.89171 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.97 9.53 -148.98 -1.42 -12.39 16 3 C 0.03 0.55 5.36 71.98 0.39 0.93 16 4 C 0.09 2.51 5.34 86.38 0.46 2.97 16 5 N -0.58 -23.71 2.42 -826.14 -2.00 -25.71 16 6 C 0.24 12.05 4.05 85.63 0.35 12.40 16 7 C -0.54 -32.88 9.94 25.60 0.25 -32.63 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 9 C 0.01 0.82 5.47 84.65 0.46 1.28 16 10 N -0.94 -61.25 13.96 21.45 0.30 -60.95 16 11 Si 0.95 46.44 27.47 68.60 1.88 48.33 16 12 H -0.25 -11.12 7.11 99.48 0.71 -10.42 16 13 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 14 H -0.26 -12.61 6.54 99.48 0.65 -11.96 16 15 C 0.50 21.75 7.03 87.66 0.62 22.37 16 16 O -0.58 -32.98 16.17 14.97 0.24 -32.74 16 17 C 0.03 0.83 3.24 30.45 0.10 0.93 16 18 H 0.13 3.36 7.22 -2.39 -0.02 3.34 16 19 C -0.14 -2.54 4.23 30.77 0.13 -2.41 16 20 C 0.11 1.98 7.45 46.90 0.35 2.33 16 21 C -0.08 -0.53 10.49 71.23 0.75 0.22 16 22 N -0.34 -10.04 12.45 -40.62 -0.51 -10.54 16 23 O -0.23 -8.92 11.84 -20.41 -0.24 -9.17 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.13 4.03 -2.39 -0.01 1.12 16 29 H 0.08 2.55 8.07 -2.38 -0.02 2.53 16 30 H 0.12 2.26 6.15 -2.39 -0.01 2.25 16 31 H 0.01 0.52 6.48 -2.38 -0.02 0.51 16 32 H 0.06 2.73 6.54 -2.39 -0.02 2.71 16 33 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 34 H 0.16 1.24 6.40 -2.39 -0.02 1.22 16 35 H 0.11 2.11 6.85 -2.39 -0.02 2.10 16 36 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 Total: -1.00 -94.81 313.30 4.37 -90.44 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 1.01 Total: 2.65 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.10 Total: 10.09 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -2.21 Total: -97.20 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -1.42 Total: -54.30 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.88 Total: 48.33 kcal Total: -94.81 4.37 -90.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826015812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.922 kcal (2) G-P(sol) polarization free energy of solvation -94.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds