Wall clock time and date at job start Mon Mar 30 2020 02:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47040 * 2 1 4 4 C 1.52994 * 109.46959 * 120.00105 * 2 1 3 5 5 C 1.50700 * 109.47606 * 294.99812 * 4 2 1 6 6 O 1.20831 * 119.99626 * 0.02562 * 5 4 2 7 7 O 1.34224 * 120.00518 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.46636 * 239.99842 * 2 1 3 9 9 O 1.21277 * 120.00409 * 334.53046 * 8 2 1 10 10 N 1.34780 * 119.99597 * 154.52273 * 8 2 1 11 11 C 1.46967 * 120.59221 * 4.80413 * 10 8 2 12 12 C 1.53812 * 108.39611 * 124.75636 * 11 10 8 13 13 N 1.46961 * 108.58061 * 49.63647 * 12 11 10 14 14 C 1.36937 * 120.59567 * 124.66794 * 13 12 11 15 15 H 1.08010 * 119.99992 * 212.06687 * 14 13 12 16 16 C 1.38807 * 120.00249 * 32.05893 * 14 13 12 17 17 N 1.31623 * 119.99727 * 10.26892 * 16 14 13 18 18 Si 1.86794 * 120.00405 * 190.26413 * 16 14 13 19 19 H 1.48499 * 109.47382 * 90.00239 * 18 16 14 20 20 H 1.48498 * 109.47348 * 210.00256 * 18 16 14 21 21 H 1.48503 * 109.47303 * 330.00185 * 18 16 14 22 22 C 1.46972 * 118.81211 * 304.64563 * 13 12 11 23 23 C 1.46961 * 120.59441 * 185.08114 * 10 8 2 24 24 H 1.08998 * 109.47611 * 175.28715 * 1 2 3 25 25 H 1.09010 * 109.46691 * 295.28340 * 1 2 3 26 26 H 1.08996 * 109.47513 * 55.27673 * 1 2 3 27 27 H 1.09004 * 109.46757 * 174.99555 * 4 2 1 28 28 H 1.09005 * 109.47432 * 55.00359 * 4 2 1 29 29 H 0.96697 * 117.00366 * 180.02562 * 7 5 4 30 30 H 1.08998 * 109.60657 * 244.53647 * 11 10 8 31 31 H 1.08996 * 109.61227 * 5.05157 * 11 10 8 32 32 H 1.08994 * 109.74268 * 289.84865 * 12 11 10 33 33 H 1.09004 * 109.52945 * 169.29914 * 12 11 10 34 34 H 0.96997 * 119.99820 * 180.02562 * 17 16 14 35 35 H 1.08990 * 109.60904 * 295.48300 * 22 13 12 36 36 H 1.09003 * 109.74822 * 175.05203 * 22 13 12 37 37 H 1.09004 * 109.60852 * 354.94686 * 23 10 8 38 38 H 1.08998 * 109.60944 * 115.45677 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0134 1.0831 2.3638 7 8 1.9840 -0.3896 3.6951 8 6 2.0323 -0.7105 -1.2305 9 8 1.3404 -1.5455 -1.7735 10 7 3.2503 -0.4177 -1.7276 11 6 4.1419 0.5138 -1.0224 12 6 5.4824 -0.1961 -0.7676 13 7 5.9404 -0.7980 -2.0277 14 6 7.1780 -0.5006 -2.5327 15 1 7.3349 -0.4815 -3.6012 16 6 8.2308 -0.2235 -1.6717 17 7 8.0995 -0.4413 -0.3802 18 14 9.8340 0.4584 -2.3455 19 1 9.7763 1.9423 -2.3534 20 1 10.9612 0.0115 -1.4883 21 1 10.0390 -0.0363 -3.7306 22 6 5.0466 -1.7252 -2.7358 23 6 3.7084 -1.0196 -2.9877 24 1 -0.3634 -1.0241 -0.0844 25 1 -0.3633 0.4390 0.9293 26 1 -0.3634 0.5853 -0.8446 27 1 3.1263 -0.7995 1.2055 28 1 1.6054 -1.7199 1.2951 29 1 1.7056 0.1434 4.4524 30 1 4.3049 1.3996 -1.6363 31 1 3.6923 0.8019 -0.0721 32 1 5.3495 -0.9753 -0.0171 33 1 6.2183 0.5288 -0.4197 34 1 8.8351 -0.2473 0.2215 35 1 4.8827 -2.6132 -2.1254 36 1 5.4934 -2.0129 -3.6875 37 1 2.9724 -1.7445 -3.3355 38 1 3.8412 -0.2404 -3.7382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827263811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:31 Heat of formation + Delta-G solvation = -103.907072 kcal Electronic energy + Delta-G solvation = -21726.423542 eV Core-core repulsion = 18376.643630 eV Total energy + Delta-G solvation = -3349.779912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66611 -39.61868 -36.94234 -36.35050 -34.35509 -33.81948 -31.31001 -30.17242 -28.43179 -27.11198 -24.60276 -23.42119 -22.62639 -21.38982 -20.13022 -18.53909 -18.13018 -17.44943 -16.58499 -16.21509 -15.89111 -15.34919 -14.82976 -14.80238 -14.14501 -13.69150 -13.57421 -13.35771 -13.24129 -13.04082 -12.79162 -12.29550 -12.10635 -11.71838 -11.40048 -11.34711 -11.27926 -11.00486 -10.88028 -10.77939 -10.60187 -10.53151 -10.25565 -10.11034 -9.89223 -9.36414 -8.63527 -8.29186 -6.70877 -5.89872 -3.40425 2.09530 2.64187 3.11505 3.30997 3.38227 3.39084 3.46287 4.39621 4.56836 4.76924 4.80321 5.17447 5.26029 5.30991 5.38757 5.48147 5.54182 5.75526 5.82921 5.88821 5.92378 6.04293 6.11645 6.17570 6.23434 6.29530 6.40084 6.44288 6.75563 6.89127 7.15917 7.42706 7.67787 7.77718 7.86193 8.34457 8.49644 9.08707 9.68842 10.27350 11.17509 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.005436 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.115499 B = 5149.599100 C = 6068.650276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.109 4.109 5 C 0.486 3.514 6 O -0.513 6.513 7 O -0.515 6.515 8 C 0.515 3.485 9 O -0.553 6.553 10 N -0.595 5.595 11 C 0.074 3.926 12 C 0.159 3.841 13 N -0.591 5.591 14 C -0.256 4.256 15 H 0.066 0.934 16 C 0.006 3.994 17 N -0.905 5.905 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.132 3.868 23 C 0.094 3.906 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.409 0.591 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.102 0.898 34 H 0.256 0.744 35 H 0.024 0.976 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 1.588 4.722 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.119 0.881 4 C -0.147 4.147 5 C 0.329 3.671 6 O -0.402 6.402 7 O -0.326 6.326 8 C 0.302 3.698 9 O -0.432 6.432 10 N -0.326 5.326 11 C -0.050 4.050 12 C 0.032 3.968 13 N -0.314 5.314 14 C -0.386 4.386 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.549 5.549 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.203 1.203 22 C 0.005 3.995 23 C -0.030 4.030 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.268 0.732 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.120 0.880 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.319 1.205 4.171 12.123 hybrid contribution 0.854 0.809 0.297 1.213 sum -10.465 2.014 4.468 11.556 Atomic orbital electron populations 1.21778 0.92118 1.02928 1.02886 1.21116 0.98659 1.00778 0.91372 0.88053 1.21349 1.04989 1.00317 0.88053 1.23340 0.75417 0.83704 0.84673 1.90698 1.37644 1.24770 1.87071 1.84561 1.74700 1.56347 1.17016 1.20350 0.81159 0.82738 0.85562 1.90633 1.56797 1.33960 1.61846 1.48115 1.14930 1.45172 1.24413 1.22902 0.93525 0.92831 0.95741 1.21284 0.90741 0.96690 0.88038 1.43930 1.14599 1.48541 1.24294 1.19206 0.85325 1.42627 0.91399 0.91586 1.25199 0.97680 1.00598 0.95807 1.69933 1.32054 1.50763 1.02166 0.86215 0.83029 0.78789 0.78255 1.21327 1.21620 1.20345 1.21304 0.89264 0.91907 0.97042 1.22229 0.98028 0.97979 0.84747 0.91690 0.90783 0.92295 0.86475 0.86834 0.73199 0.91659 0.91105 0.95803 0.88003 0.93407 0.95793 0.91519 0.89946 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.61 37.16 0.32 -1.49 16 2 C -0.10 -1.33 1.50 -91.77 -0.14 -1.47 16 3 H 0.10 1.36 6.49 -51.93 -0.34 1.02 16 4 C -0.11 -1.32 4.98 -27.89 -0.14 -1.46 16 5 C 0.49 5.68 8.01 36.01 0.29 5.97 16 6 O -0.51 -7.04 14.75 -18.75 -0.28 -7.32 16 7 O -0.51 -4.90 13.42 -39.24 -0.53 -5.43 16 8 C 0.51 8.66 6.79 -10.98 -0.07 8.58 16 9 O -0.55 -10.74 15.41 5.56 0.09 -10.65 16 10 N -0.59 -10.44 2.94 -172.22 -0.51 -10.94 16 11 C 0.07 1.29 6.12 -3.36 -0.02 1.27 16 12 C 0.16 3.47 5.47 -3.37 -0.02 3.45 16 13 N -0.59 -14.01 2.96 -171.77 -0.51 -14.51 16 14 C -0.26 -6.66 9.58 -15.06 -0.14 -6.80 16 15 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 16 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 17 N -0.91 -24.82 11.04 55.49 0.61 -24.21 16 18 Si 0.91 20.78 29.57 -169.99 -5.03 15.76 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.13 2.69 6.67 -3.59 -0.02 2.67 16 23 C 0.09 1.70 6.60 -3.60 -0.02 1.67 16 24 H 0.06 0.86 7.69 -51.93 -0.40 0.46 16 25 H 0.07 0.93 5.89 -51.92 -0.31 0.62 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.12 1.48 7.26 -51.93 -0.38 1.10 16 28 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.41 2.07 9.10 45.56 0.41 2.48 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.04 4.92 -51.93 -0.26 0.79 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 2.47 6.05 -51.93 -0.31 2.16 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.30 7.94 -51.93 -0.41 0.89 16 37 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 308.13 15.07 4.64 4.64 Total: -1.00 -31.41 308.13 -6.00 -37.41 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.43 Total: 2.80 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -0.06 Total: 12.45 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.40 Total: -49.66 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.72 Total: -23.40 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.41 -6.00 -37.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827263811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.498 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds