Wall clock time and date at job start Mon Mar 30 2020 02:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47040 * 2 1 4 4 C 1.52994 * 109.46959 * 120.00105 * 2 1 3 5 5 C 1.50700 * 109.47606 * 294.99812 * 4 2 1 6 6 O 1.20831 * 119.99626 * 0.02562 * 5 4 2 7 7 O 1.34224 * 120.00518 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.46636 * 239.99842 * 2 1 3 9 9 O 1.21277 * 120.00409 * 334.53046 * 8 2 1 10 10 N 1.34780 * 119.99597 * 154.52273 * 8 2 1 11 11 C 1.46967 * 120.59221 * 4.80413 * 10 8 2 12 12 C 1.53812 * 108.39611 * 124.75636 * 11 10 8 13 13 N 1.46961 * 108.58061 * 49.63647 * 12 11 10 14 14 C 1.36937 * 120.59567 * 124.66794 * 13 12 11 15 15 H 1.08010 * 119.99992 * 212.06687 * 14 13 12 16 16 C 1.38807 * 120.00249 * 32.05893 * 14 13 12 17 17 N 1.31623 * 119.99727 * 10.26892 * 16 14 13 18 18 Si 1.86794 * 120.00405 * 190.26413 * 16 14 13 19 19 H 1.48499 * 109.47382 * 90.00239 * 18 16 14 20 20 H 1.48498 * 109.47348 * 210.00256 * 18 16 14 21 21 H 1.48503 * 109.47303 * 330.00185 * 18 16 14 22 22 C 1.46972 * 118.81211 * 304.64563 * 13 12 11 23 23 C 1.46961 * 120.59441 * 185.08114 * 10 8 2 24 24 H 1.08998 * 109.47611 * 175.28715 * 1 2 3 25 25 H 1.09010 * 109.46691 * 295.28340 * 1 2 3 26 26 H 1.08996 * 109.47513 * 55.27673 * 1 2 3 27 27 H 1.09004 * 109.46757 * 174.99555 * 4 2 1 28 28 H 1.09005 * 109.47432 * 55.00359 * 4 2 1 29 29 H 0.96697 * 117.00366 * 180.02562 * 7 5 4 30 30 H 1.08998 * 109.60657 * 244.53647 * 11 10 8 31 31 H 1.08996 * 109.61227 * 5.05157 * 11 10 8 32 32 H 1.08994 * 109.74268 * 289.84865 * 12 11 10 33 33 H 1.09004 * 109.52945 * 169.29914 * 12 11 10 34 34 H 0.96997 * 119.99820 * 180.02562 * 17 16 14 35 35 H 1.08990 * 109.60904 * 295.48300 * 22 13 12 36 36 H 1.09003 * 109.74822 * 175.05203 * 22 13 12 37 37 H 1.09004 * 109.60852 * 354.94686 * 23 10 8 38 38 H 1.08998 * 109.60944 * 115.45677 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0134 1.0831 2.3638 7 8 1.9840 -0.3896 3.6951 8 6 2.0323 -0.7105 -1.2305 9 8 1.3404 -1.5455 -1.7735 10 7 3.2503 -0.4177 -1.7276 11 6 4.1419 0.5138 -1.0224 12 6 5.4824 -0.1961 -0.7676 13 7 5.9404 -0.7980 -2.0277 14 6 7.1780 -0.5006 -2.5327 15 1 7.3349 -0.4815 -3.6012 16 6 8.2308 -0.2235 -1.6717 17 7 8.0995 -0.4413 -0.3802 18 14 9.8340 0.4584 -2.3455 19 1 9.7763 1.9423 -2.3534 20 1 10.9612 0.0115 -1.4883 21 1 10.0390 -0.0363 -3.7306 22 6 5.0466 -1.7252 -2.7358 23 6 3.7084 -1.0196 -2.9877 24 1 -0.3634 -1.0241 -0.0844 25 1 -0.3633 0.4390 0.9293 26 1 -0.3634 0.5853 -0.8446 27 1 3.1263 -0.7995 1.2055 28 1 1.6054 -1.7199 1.2951 29 1 1.7056 0.1434 4.4524 30 1 4.3049 1.3996 -1.6363 31 1 3.6923 0.8019 -0.0721 32 1 5.3495 -0.9753 -0.0171 33 1 6.2183 0.5288 -0.4197 34 1 8.8351 -0.2473 0.2215 35 1 4.8827 -2.6132 -2.1254 36 1 5.4934 -2.0129 -3.6875 37 1 2.9724 -1.7445 -3.3355 38 1 3.8412 -0.2404 -3.7382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827263811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:30 Heat of formation + Delta-G solvation = -124.928280 kcal Electronic energy + Delta-G solvation = -21727.335090 eV Core-core repulsion = 18376.643630 eV Total energy + Delta-G solvation = -3350.691460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.74406 -40.84203 -38.51967 -37.24914 -35.68660 -35.33358 -33.09853 -31.80095 -29.43825 -28.79309 -26.08745 -24.99646 -24.08895 -22.55154 -21.57925 -19.89971 -19.28982 -18.64374 -18.07070 -17.41880 -17.02497 -16.80209 -16.51996 -16.14174 -15.53820 -15.34022 -15.09858 -14.87767 -14.67332 -14.24650 -13.86012 -13.63859 -13.34174 -13.10465 -13.06904 -12.70829 -12.48691 -12.34293 -12.32277 -12.20634 -12.15530 -11.99251 -11.85219 -11.66706 -11.56678 -10.77268 -10.56675 -9.82718 -8.59403 -7.87134 -5.41081 1.18911 1.43943 1.50316 1.51423 1.59464 1.94393 2.27416 2.51617 3.28940 3.46599 3.59801 3.62009 3.76976 4.15642 4.24413 4.30317 4.38084 4.46658 4.49383 4.53751 4.60516 4.67554 4.76217 4.83255 4.92976 5.02902 5.10200 5.22964 5.27233 5.54505 5.63201 5.65175 5.67357 6.39716 6.46113 7.01449 7.12188 7.14155 7.79250 8.33758 9.17235 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.005436 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.115499 B = 5149.599100 C = 6068.650276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 H 0.108 0.892 4 C -0.109 4.109 5 C 0.496 3.504 6 O -0.535 6.535 7 O -0.512 6.512 8 C 0.517 3.483 9 O -0.578 6.578 10 N -0.600 5.600 11 C 0.091 3.909 12 C 0.165 3.835 13 N -0.609 5.609 14 C -0.265 4.265 15 H 0.067 0.933 16 C -0.042 4.042 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.283 1.283 20 H -0.296 1.296 21 H -0.271 1.271 22 C 0.133 3.867 23 C 0.103 3.897 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.430 0.570 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.006 0.994 33 H 0.075 0.925 34 H 0.252 0.748 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 2.242 4.871 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 H 0.126 0.874 4 C -0.147 4.147 5 C 0.340 3.660 6 O -0.425 6.425 7 O -0.326 6.326 8 C 0.306 3.694 9 O -0.459 6.459 10 N -0.331 5.331 11 C -0.033 4.033 12 C 0.039 3.961 13 N -0.332 5.332 14 C -0.395 4.395 15 H 0.084 0.916 16 C -0.238 4.238 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.210 1.210 20 H -0.223 1.223 21 H -0.196 1.196 22 C 0.006 3.994 23 C -0.021 4.021 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.292 0.708 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.024 0.976 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.039 1.860 4.332 12.930 hybrid contribution 1.046 0.532 0.281 1.207 sum -10.993 2.392 4.613 12.159 Atomic orbital electron populations 1.21725 0.91393 1.02703 1.03215 1.21088 0.99144 1.00709 0.90386 0.87360 1.21288 1.04683 1.00785 0.87924 1.23050 0.74862 0.83044 0.85087 1.90699 1.38739 1.25602 1.87466 1.84509 1.74290 1.56654 1.17118 1.20845 0.80444 0.82144 0.85947 1.90624 1.57368 1.35115 1.62754 1.48170 1.15369 1.45263 1.24312 1.22650 0.91308 0.92020 0.97276 1.21105 0.92312 0.95684 0.87028 1.44187 1.14623 1.49554 1.24853 1.19489 0.86413 1.42049 0.91597 0.91560 1.25876 1.00486 1.01356 0.96071 1.70081 1.32606 1.51994 1.03088 0.85254 0.79285 0.78085 0.77683 1.20959 1.22270 1.19623 1.21355 0.90091 0.91267 0.96656 1.22052 0.96530 0.98150 0.85329 0.92131 0.90126 0.92297 0.86922 0.85922 0.70770 0.91278 0.88176 0.97584 0.90637 0.93865 0.97022 0.91005 0.89389 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.61 71.98 0.62 -2.56 16 2 C -0.09 -2.33 1.50 -11.54 -0.02 -2.34 16 3 H 0.11 2.62 6.49 -2.39 -0.02 2.60 16 4 C -0.11 -2.44 4.98 29.85 0.15 -2.29 16 5 C 0.50 10.49 8.01 71.24 0.57 11.06 16 6 O -0.53 -13.47 14.75 21.95 0.32 -13.15 16 7 O -0.51 -8.50 13.42 -51.36 -0.69 -9.19 16 8 C 0.52 16.57 6.79 87.66 0.60 17.16 16 9 O -0.58 -21.65 15.41 -3.02 -0.05 -21.70 16 10 N -0.60 -20.20 2.94 -817.16 -2.40 -22.60 16 11 C 0.09 3.05 6.12 86.56 0.53 3.58 16 12 C 0.17 7.21 5.47 86.57 0.47 7.68 16 13 N -0.61 -28.87 2.96 -697.35 -2.06 -30.93 16 14 C -0.27 -13.80 9.58 84.03 0.80 -13.00 16 15 H 0.07 3.37 7.85 -2.91 -0.02 3.35 16 16 C -0.04 -2.21 5.06 84.86 0.43 -1.78 16 17 N -0.93 -51.76 11.04 21.65 0.24 -51.52 16 18 Si 0.97 42.72 29.57 68.60 2.03 44.75 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 C 0.13 5.38 6.67 86.41 0.58 5.96 16 23 C 0.10 3.61 6.60 86.42 0.57 4.18 16 24 H 0.06 1.50 7.69 -2.39 -0.02 1.48 16 25 H 0.08 1.85 5.89 -2.38 -0.01 1.83 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.11 2.67 7.26 -2.38 -0.02 2.65 16 28 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.43 3.20 9.10 -74.06 -0.67 2.53 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.10 2.75 4.92 -2.39 -0.01 2.73 16 32 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.08 3.72 6.05 -2.38 -0.01 3.70 16 34 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 2.78 7.94 -2.39 -0.02 2.77 16 37 H 0.09 2.99 6.99 -2.38 -0.02 2.98 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -66.00 308.13 3.10 -62.90 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.41 Total: 13.79 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 5.30 Total: 27.65 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -4.23 Total: -105.06 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.41 Total: -44.04 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -66.00 3.10 -62.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827263811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.027 kcal (2) G-P(sol) polarization free energy of solvation -66.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds