Wall clock time and date at job start Mon Mar 30 2020 01:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46932 * 2 1 4 4 C 1.46903 * 110.99415 * 299.99667 * 3 2 1 5 5 C 1.50704 * 109.46512 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00355 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00044 * 180.02562 * 5 4 3 8 8 C 1.46492 * 120.00332 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47320 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00237 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00099 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99740 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99889 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47450 * 59.99351 * 13 11 9 15 15 H 1.48498 * 109.47023 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47029 * 299.99144 * 13 11 9 17 17 C 1.50700 * 109.47177 * 239.99588 * 2 1 3 18 18 O 1.20827 * 119.99731 * 335.00407 * 17 2 1 19 19 O 1.34220 * 119.99922 * 154.99978 * 17 2 1 20 20 C 1.53003 * 109.46978 * 119.99722 * 2 1 3 21 21 C 1.53001 * 117.51964 * 356.28481 * 20 2 1 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 2 23 23 H 1.08998 * 109.47344 * 300.00253 * 1 2 3 24 24 H 1.09003 * 109.47562 * 60.00177 * 1 2 3 25 25 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 26 26 H 1.00890 * 111.00067 * 63.95438 * 3 2 1 27 27 H 1.08992 * 109.47507 * 299.99703 * 4 3 2 28 28 H 1.09000 * 109.47527 * 60.00712 * 4 3 2 29 29 H 0.97003 * 120.00075 * 359.97438 * 7 5 4 30 30 H 1.08996 * 109.47447 * 300.00004 * 8 7 5 31 31 H 1.09006 * 109.47274 * 59.99874 * 8 7 5 32 32 H 0.97001 * 119.99740 * 180.02562 * 12 11 9 33 33 H 0.96704 * 117.00449 * 180.02562 * 19 17 2 34 34 H 1.09002 * 115.54973 * 210.58264 * 20 2 1 35 35 H 1.09001 * 117.49733 * 214.97413 * 21 20 2 36 36 H 1.08995 * 117.49577 * 359.97438 * 21 20 2 37 37 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 38 38 H 1.09004 * 117.51638 * 107.47550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5486 2.1098 -1.1878 5 6 2.0702 3.5233 -1.1533 6 8 2.7661 3.8905 -0.2304 7 7 1.7632 4.3793 -2.1480 8 6 2.2698 5.7535 -2.1142 9 6 1.7857 6.4974 -3.3321 10 1 1.1633 5.9966 -4.0589 11 6 2.1382 7.8172 -3.5191 12 7 2.8965 8.4270 -2.6344 13 14 1.5375 8.7395 -5.0284 14 1 0.0527 8.7599 -5.0377 15 1 2.0511 10.1324 -4.9942 16 1 2.0309 8.0595 -6.2529 17 6 2.0323 -0.7105 -1.2304 18 8 1.3395 -1.5363 -1.7763 19 8 3.2493 -0.4259 -1.7199 20 6 2.0400 -0.7212 1.2493 21 6 0.9990 -1.2039 2.2614 22 6 1.7329 -2.2146 1.3777 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.7502 1.8638 0.8462 27 1 1.9121 1.6106 -2.0859 28 1 0.4587 2.1245 -1.1961 29 1 1.2069 4.0855 -2.8863 30 1 1.9066 6.2526 -1.2159 31 1 3.3597 5.7389 -2.1063 32 1 3.1442 9.3556 -2.7658 33 1 3.5279 -0.9070 -2.5111 34 1 2.9949 -0.3684 1.6389 35 1 1.2690 -1.1686 3.3168 36 1 -0.0495 -1.0074 2.0375 37 1 1.1673 -2.6832 0.5723 38 1 2.4860 -2.8443 1.8515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827728600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:10 Heat of formation + Delta-G solvation = -98.044406 kcal Electronic energy + Delta-G solvation = -20859.789375 eV Core-core repulsion = 17510.263687 eV Total energy + Delta-G solvation = -3349.525688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04396 -38.89369 -38.19443 -36.18190 -35.32369 -34.13007 -32.33267 -30.22994 -27.88168 -26.59834 -25.02383 -23.00523 -22.48196 -22.04948 -19.75721 -19.60878 -18.17452 -17.59879 -16.64989 -16.51481 -15.69920 -15.41337 -15.37612 -15.12604 -14.67246 -14.24585 -13.86743 -13.61773 -13.36484 -12.89701 -12.59413 -12.43046 -12.12863 -11.93377 -11.80088 -11.66398 -11.47676 -11.41999 -11.01142 -10.96464 -10.86681 -10.67664 -10.32467 -10.26040 -9.41938 -9.11430 -8.73871 -8.57228 -7.88479 -6.17013 -4.24120 2.00868 2.80165 3.24897 3.29606 3.30965 3.34031 3.46417 3.58902 4.18877 4.29381 4.37545 4.55274 4.68098 4.80417 4.96631 5.05259 5.18706 5.20204 5.28710 5.36116 5.41668 5.49058 5.54070 5.58246 5.79364 5.82093 5.92022 6.35533 6.63397 7.16600 7.30862 7.42607 7.51650 7.65864 7.81578 7.96632 8.61249 8.77365 9.08894 9.42445 10.93131 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.036373 B = 0.003512 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.607324 B = 7969.941004 C = 8239.987512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.157 3.843 3 N -0.644 5.644 4 C 0.031 3.969 5 C 0.501 3.499 6 O -0.541 6.541 7 N -0.714 5.714 8 C 0.251 3.749 9 C -0.545 4.545 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.498 3.502 18 O -0.520 6.520 19 O -0.491 6.491 20 C -0.147 4.147 21 C -0.173 4.173 22 C -0.178 4.178 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.363 0.637 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.390 0.610 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.267 0.733 33 H 0.404 0.596 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 -19.975 5.544 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.064 3.936 3 N -0.279 5.279 4 C -0.101 4.101 5 C 0.285 3.715 6 O -0.418 6.418 7 N -0.363 5.363 8 C 0.131 3.869 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.340 3.660 18 O -0.409 6.409 19 O -0.301 6.301 20 C -0.166 4.166 21 C -0.210 4.210 22 C -0.215 4.215 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.185 0.815 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.222 0.778 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.262 0.738 34 H 0.145 0.855 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.673 -19.637 6.178 20.911 hybrid contribution -1.248 0.264 -1.577 2.028 sum -4.921 -19.373 4.601 20.511 Atomic orbital electron populations 1.22605 0.93733 1.04219 1.03387 1.20184 0.93292 0.90073 0.90041 1.60216 1.62505 0.99485 1.05684 1.22000 0.98636 0.94272 0.95219 1.20142 0.81655 0.86296 0.83437 1.90672 1.38086 1.78037 1.35047 1.46436 1.52012 1.14398 1.23419 1.19096 0.95172 0.75218 0.97463 1.21192 1.33282 0.96736 1.07097 0.91971 1.24952 0.94803 0.97331 0.96904 1.69965 1.35241 1.12138 1.34906 0.86471 0.79061 0.78762 0.82587 1.20086 1.21057 1.20055 1.23192 0.78907 0.79761 0.84132 1.90706 1.57567 1.33296 1.59290 1.84727 1.34249 1.64709 1.46387 1.22189 1.01723 0.96564 0.96078 1.23211 0.98023 1.03024 0.96744 1.23085 1.03784 0.91385 1.03257 0.90273 0.91325 0.90389 0.81453 0.88744 0.92141 0.77819 0.95541 0.95451 0.92371 0.73846 0.85462 0.88166 0.87821 0.88232 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 6.34 37.16 0.24 -1.48 16 2 C 0.16 1.72 0.79 -132.75 -0.10 1.62 16 3 N -0.64 -8.55 5.48 -102.39 -0.56 -9.11 16 4 C 0.03 0.44 5.43 -4.97 -0.03 0.41 16 5 C 0.50 9.82 7.87 -10.98 -0.09 9.73 16 6 O -0.54 -12.78 16.20 5.56 0.09 -12.69 16 7 N -0.71 -14.85 5.55 -61.47 -0.34 -15.19 16 8 C 0.25 6.63 5.43 -5.20 -0.03 6.60 16 9 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 10 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 13 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 C 0.50 6.04 5.37 36.01 0.19 6.23 16 18 O -0.52 -7.09 16.47 -18.75 -0.31 -7.40 16 19 O -0.49 -5.56 12.48 -39.23 -0.49 -6.05 16 20 C -0.15 -1.40 5.43 -90.61 -0.49 -1.89 16 21 C -0.17 -1.30 9.50 -26.73 -0.25 -1.56 16 22 C -0.18 -1.48 9.48 -26.73 -0.25 -1.74 16 23 H 0.08 0.64 7.23 -51.93 -0.38 0.26 16 24 H 0.07 0.68 6.40 -51.93 -0.33 0.35 16 25 H 0.08 0.72 6.91 -51.93 -0.36 0.36 16 26 H 0.36 4.79 8.42 -39.30 -0.33 4.46 16 27 H 0.09 1.29 6.64 -51.93 -0.34 0.95 16 28 H 0.06 0.73 6.30 -51.93 -0.33 0.40 16 29 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.40 2.76 9.10 45.56 0.41 3.17 16 34 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.72 5.82 -51.93 -0.30 0.42 16 37 H 0.10 0.92 7.44 -51.93 -0.39 0.54 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -33.85 319.90 -6.64 -40.49 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.33 Total: 10.11 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.23 Total: 4.56 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.17 Total: -49.61 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.71 Total: -26.14 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.85 -6.64 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827728600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.555 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds