Wall clock time and date at job start Mon Mar 30 2020 01:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46932 * 2 1 4 4 C 1.46903 * 110.99415 * 299.99667 * 3 2 1 5 5 C 1.50704 * 109.46512 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00355 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00044 * 180.02562 * 5 4 3 8 8 C 1.46492 * 120.00332 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47320 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00237 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00099 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99740 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99889 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47450 * 59.99351 * 13 11 9 15 15 H 1.48498 * 109.47023 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47029 * 299.99144 * 13 11 9 17 17 C 1.50700 * 109.47177 * 239.99588 * 2 1 3 18 18 O 1.20827 * 119.99731 * 335.00407 * 17 2 1 19 19 O 1.34220 * 119.99922 * 154.99978 * 17 2 1 20 20 C 1.53003 * 109.46978 * 119.99722 * 2 1 3 21 21 C 1.53001 * 117.51964 * 356.28481 * 20 2 1 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 2 23 23 H 1.08998 * 109.47344 * 300.00253 * 1 2 3 24 24 H 1.09003 * 109.47562 * 60.00177 * 1 2 3 25 25 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 26 26 H 1.00890 * 111.00067 * 63.95438 * 3 2 1 27 27 H 1.08992 * 109.47507 * 299.99703 * 4 3 2 28 28 H 1.09000 * 109.47527 * 60.00712 * 4 3 2 29 29 H 0.97003 * 120.00075 * 359.97438 * 7 5 4 30 30 H 1.08996 * 109.47447 * 300.00004 * 8 7 5 31 31 H 1.09006 * 109.47274 * 59.99874 * 8 7 5 32 32 H 0.97001 * 119.99740 * 180.02562 * 12 11 9 33 33 H 0.96704 * 117.00449 * 180.02562 * 19 17 2 34 34 H 1.09002 * 115.54973 * 210.58264 * 20 2 1 35 35 H 1.09001 * 117.49733 * 214.97413 * 21 20 2 36 36 H 1.08995 * 117.49577 * 359.97438 * 21 20 2 37 37 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 38 38 H 1.09004 * 117.51638 * 107.47550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5486 2.1098 -1.1878 5 6 2.0702 3.5233 -1.1533 6 8 2.7661 3.8905 -0.2304 7 7 1.7632 4.3793 -2.1480 8 6 2.2698 5.7535 -2.1142 9 6 1.7857 6.4974 -3.3321 10 1 1.1633 5.9966 -4.0589 11 6 2.1382 7.8172 -3.5191 12 7 2.8965 8.4270 -2.6344 13 14 1.5375 8.7395 -5.0284 14 1 0.0527 8.7599 -5.0377 15 1 2.0511 10.1324 -4.9942 16 1 2.0309 8.0595 -6.2529 17 6 2.0323 -0.7105 -1.2304 18 8 1.3395 -1.5363 -1.7763 19 8 3.2493 -0.4259 -1.7199 20 6 2.0400 -0.7212 1.2493 21 6 0.9990 -1.2039 2.2614 22 6 1.7329 -2.2146 1.3777 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.7502 1.8638 0.8462 27 1 1.9121 1.6106 -2.0859 28 1 0.4587 2.1245 -1.1961 29 1 1.2069 4.0855 -2.8863 30 1 1.9066 6.2526 -1.2159 31 1 3.3597 5.7389 -2.1063 32 1 3.1442 9.3556 -2.7658 33 1 3.5279 -0.9070 -2.5111 34 1 2.9949 -0.3684 1.6389 35 1 1.2690 -1.1686 3.3168 36 1 -0.0495 -1.0074 2.0375 37 1 1.1673 -2.6832 0.5723 38 1 2.4860 -2.8443 1.8515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827728600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:10 Heat of formation + Delta-G solvation = -125.176020 kcal Electronic energy + Delta-G solvation = -20860.965890 eV Core-core repulsion = 17510.263687 eV Total energy + Delta-G solvation = -3350.702203 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.95629 -40.45125 -39.08177 -37.12160 -36.40880 -35.94195 -34.33778 -31.30314 -29.52889 -27.80243 -26.19647 -24.52193 -23.33597 -23.11781 -21.37100 -20.50554 -19.28336 -18.90917 -18.01121 -17.62382 -17.07204 -16.84136 -16.69703 -16.31289 -16.13920 -15.39052 -15.31246 -14.65776 -14.35554 -14.30734 -14.08734 -13.85781 -13.46876 -13.22486 -12.94729 -12.81883 -12.66851 -12.54169 -12.49581 -12.23528 -12.16629 -11.77604 -11.50675 -11.35353 -11.02790 -10.78727 -10.76712 -9.83853 -9.58318 -8.28371 -6.44965 1.08675 1.43688 1.47532 1.55724 1.75469 2.00154 2.22552 2.43018 2.85899 3.01484 3.06430 3.53138 3.76344 3.87869 3.97716 4.10561 4.18870 4.26472 4.29568 4.32216 4.62417 4.68503 4.78393 4.94401 5.08075 5.11364 5.19742 5.24057 5.25930 5.48549 5.50612 5.64890 5.75732 5.85718 6.14662 6.65723 6.91457 6.99950 7.24120 7.49039 8.83549 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.036373 B = 0.003512 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.607324 B = 7969.941004 C = 8239.987512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.159 3.841 3 N -0.657 5.657 4 C 0.049 3.951 5 C 0.499 3.501 6 O -0.585 6.585 7 N -0.709 5.709 8 C 0.268 3.732 9 C -0.558 4.558 10 H 0.083 0.917 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.984 3.016 14 H -0.262 1.262 15 H -0.286 1.286 16 H -0.263 1.263 17 C 0.498 3.502 18 O -0.538 6.538 19 O -0.501 6.501 20 C -0.163 4.163 21 C -0.157 4.157 22 C -0.175 4.175 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.363 0.637 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.407 0.593 30 H -0.010 1.010 31 H -0.013 1.013 32 H 0.269 0.731 33 H 0.421 0.579 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 -21.141 4.605 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.067 3.933 3 N -0.293 5.293 4 C -0.083 4.083 5 C 0.286 3.714 6 O -0.465 6.465 7 N -0.359 5.359 8 C 0.145 3.855 9 C -0.596 4.596 10 H 0.101 0.899 11 C -0.195 4.195 12 N -0.569 5.569 13 Si 0.807 3.193 14 H -0.186 1.186 15 H -0.211 1.211 16 H -0.188 1.188 17 C 0.340 3.660 18 O -0.428 6.428 19 O -0.313 6.313 20 C -0.181 4.181 21 C -0.194 4.194 22 C -0.213 4.213 23 H 0.113 0.887 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.185 0.815 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.243 0.757 30 H 0.008 0.992 31 H 0.005 0.995 32 H 0.078 0.922 33 H 0.281 0.719 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.331 -20.861 5.214 22.154 hybrid contribution -0.669 0.558 -1.228 1.505 sum -6.000 -20.303 3.987 21.543 Atomic orbital electron populations 1.22615 0.92347 1.04716 1.04057 1.20273 0.94294 0.88450 0.90314 1.60153 1.63396 1.00523 1.05182 1.21845 1.00060 0.90176 0.96256 1.21084 0.80360 0.88047 0.81918 1.90651 1.39935 1.79289 1.36621 1.46168 1.52377 1.12646 1.24738 1.18529 0.92708 0.78064 0.96220 1.21598 1.33374 0.97226 1.07368 0.89866 1.26054 0.94662 0.98471 1.00349 1.70130 1.36754 1.12625 1.37365 0.85221 0.78997 0.76879 0.78207 1.18628 1.21114 1.18751 1.23423 0.78829 0.79519 0.84191 1.90698 1.58043 1.34151 1.59865 1.84700 1.34030 1.65106 1.47459 1.22130 1.02250 0.97386 0.96383 1.23320 0.97950 1.01133 0.96983 1.23100 1.04078 0.90771 1.03322 0.88677 0.91571 0.89968 0.81457 0.87676 0.89121 0.75735 0.99192 0.99529 0.92237 0.71859 0.86401 0.86870 0.86910 0.89072 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 6.34 71.98 0.46 -2.51 16 2 C 0.16 3.24 0.79 2.78 0.00 3.24 16 3 N -0.66 -16.72 5.48 -477.86 -2.62 -19.34 16 4 C 0.05 1.30 5.43 85.56 0.46 1.77 16 5 C 0.50 19.59 7.87 87.66 0.69 20.28 16 6 O -0.58 -28.40 16.20 -3.04 -0.05 -28.45 16 7 N -0.71 -29.56 5.55 -466.80 -2.59 -32.15 16 8 C 0.27 14.63 5.43 85.63 0.46 15.09 16 9 C -0.56 -30.21 9.28 25.60 0.24 -29.97 16 10 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 11 C 0.00 0.24 5.46 84.66 0.46 0.70 16 12 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 13 Si 0.98 42.09 29.54 68.60 2.03 44.12 16 14 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 15 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 17 C 0.50 11.33 5.37 71.24 0.38 11.72 16 18 O -0.54 -13.84 16.47 21.96 0.36 -13.47 16 19 O -0.50 -10.74 12.48 -51.32 -0.64 -11.39 16 20 C -0.16 -2.86 5.43 -10.79 -0.06 -2.92 16 21 C -0.16 -1.99 9.50 30.59 0.29 -1.70 16 22 C -0.18 -2.62 9.48 30.60 0.29 -2.33 16 23 H 0.09 1.26 7.23 -2.39 -0.02 1.25 16 24 H 0.07 1.13 6.40 -2.39 -0.02 1.11 16 25 H 0.08 1.32 6.91 -2.39 -0.02 1.31 16 26 H 0.36 9.28 8.42 -89.70 -0.76 8.52 16 27 H 0.11 2.66 6.64 -2.39 -0.02 2.64 16 28 H 0.09 1.94 6.30 -2.39 -0.02 1.92 16 29 H 0.41 13.98 8.32 -92.71 -0.77 13.21 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 32 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 33 H 0.42 5.23 9.10 -74.05 -0.67 4.56 16 34 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.11 1.24 5.82 -2.39 -0.01 1.22 16 37 H 0.09 1.55 7.44 -2.39 -0.02 1.53 16 38 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -74.68 319.90 -0.63 -75.30 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -1.08 Total: 27.73 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 3.68 Total: 13.36 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -4.93 Total: -107.20 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -0.33 Total: -53.31 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -74.68 -0.63 -75.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827728600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.872 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds