Wall clock time and date at job start Mon Mar 30 2020 01:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46804 * 2 1 4 4 C 1.46896 * 111.00137 * 59.99953 * 3 2 1 5 5 C 1.50701 * 109.47561 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99679 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00498 * 179.97438 * 5 4 3 8 8 C 1.46495 * 120.00206 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47210 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00011 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00281 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99964 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00191 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47173 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46954 * 120.00259 * 13 11 9 16 16 H 1.48500 * 109.46981 * 240.00061 * 13 11 9 17 17 C 1.50693 * 109.46962 * 120.00007 * 2 1 3 18 18 O 1.20820 * 120.00135 * 25.00523 * 17 2 1 19 19 O 1.34230 * 119.99839 * 205.00126 * 17 2 1 20 20 C 1.53001 * 109.47035 * 240.00106 * 2 1 3 21 21 C 1.53000 * 117.50223 * 304.99970 * 20 2 1 22 22 C 1.52997 * 117.49889 * 236.37231 * 20 2 1 23 23 H 1.09002 * 109.47008 * 179.97438 * 1 2 3 24 24 H 1.08988 * 109.47454 * 299.99813 * 1 2 3 25 25 H 1.09003 * 109.47278 * 60.00152 * 1 2 3 26 26 H 1.00903 * 111.00457 * 296.04901 * 3 2 1 27 27 H 1.09000 * 109.47288 * 299.99694 * 4 3 2 28 28 H 1.09012 * 109.47038 * 59.99885 * 4 3 2 29 29 H 0.97003 * 119.99573 * 0.02562 * 7 5 4 30 30 H 1.09000 * 109.46809 * 300.00128 * 8 7 5 31 31 H 1.09000 * 109.47463 * 60.00125 * 8 7 5 32 32 H 0.96997 * 120.00296 * 180.02562 * 12 11 9 33 33 H 0.96707 * 117.00126 * 180.02562 * 19 17 2 34 34 H 1.09002 * 115.55911 * 90.68659 * 20 2 1 35 35 H 1.08990 * 117.49990 * 145.01974 * 21 20 2 36 36 H 1.09004 * 117.49237 * 359.97438 * 21 20 2 37 37 H 1.08999 * 117.49685 * 0.02562 * 22 20 2 38 38 H 1.08997 * 117.50044 * 214.98097 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5486 2.1099 1.1876 5 6 2.0701 3.5234 1.1532 6 8 2.7653 3.8908 0.2299 7 7 1.7631 4.3794 2.1479 8 6 2.2696 5.7536 2.1141 9 6 1.7865 6.4972 3.3325 10 1 1.1640 5.9964 4.0592 11 6 2.1391 7.8169 3.5196 12 7 2.8968 8.4269 2.6345 13 14 1.5397 8.7388 5.0296 14 1 0.7084 7.8345 5.8641 15 1 2.7068 9.2069 5.8195 16 1 0.7278 9.9078 4.6059 17 6 2.0323 -0.7104 1.2304 18 8 1.3396 -1.5362 1.7763 19 8 3.2493 -0.4257 1.7199 20 6 2.0400 -0.7212 -1.2493 21 6 1.5416 -2.1468 -1.4950 22 6 2.9841 -1.9076 -1.0441 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.7501 1.8639 -0.8463 27 1 0.4587 2.1245 1.1959 28 1 1.9121 1.6106 2.0860 29 1 1.2067 4.0856 2.8862 30 1 3.3595 5.7390 2.1062 31 1 1.9065 6.2528 1.2157 32 1 3.1452 9.3553 2.7663 33 1 3.5281 -0.9074 2.5108 34 1 2.2079 -0.0894 -2.1215 35 1 1.3817 -2.4527 -2.5288 36 1 0.8507 -2.5709 -0.7664 37 1 3.2415 -2.1746 -0.0192 38 1 3.7730 -2.0564 -1.7814 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827728601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:13 Heat of formation + Delta-G solvation = -98.743614 kcal Electronic energy + Delta-G solvation = -20911.558800 eV Core-core repulsion = 17562.002792 eV Total energy + Delta-G solvation = -3349.556008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16143 -38.87927 -37.91370 -36.21954 -35.48016 -34.13963 -32.33625 -30.38637 -27.85458 -26.36881 -24.92184 -23.14490 -22.49480 -22.06699 -19.86287 -19.68265 -18.20809 -17.63604 -16.64905 -16.60185 -15.61736 -15.43636 -15.12816 -15.02557 -14.62901 -14.15071 -13.99355 -13.73257 -13.33136 -13.02758 -12.56689 -12.44172 -12.15788 -11.95066 -11.83367 -11.72854 -11.59516 -11.41186 -10.96375 -10.90646 -10.71791 -10.66720 -10.41275 -10.32775 -9.38895 -9.11388 -8.74921 -8.55036 -7.88648 -6.17487 -4.24392 1.98019 2.81955 3.22888 3.28294 3.30855 3.33548 3.35272 3.68814 4.20289 4.28554 4.39073 4.50490 4.71979 4.84536 4.96440 5.03221 5.18609 5.21784 5.28954 5.36535 5.41017 5.48647 5.54537 5.60690 5.79654 5.82087 5.87102 6.32710 6.62405 7.15192 7.30816 7.42612 7.51406 7.66027 7.78414 7.96222 8.61194 8.77440 9.08817 9.42338 10.92743 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038429 B = 0.003501 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.447998 B = 7995.904376 C = 8213.968212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.155 3.845 3 N -0.644 5.644 4 C 0.031 3.969 5 C 0.501 3.499 6 O -0.541 6.541 7 N -0.714 5.714 8 C 0.250 3.750 9 C -0.543 4.543 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.497 3.503 18 O -0.520 6.520 19 O -0.491 6.491 20 C -0.137 4.137 21 C -0.176 4.176 22 C -0.173 4.173 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.362 0.638 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.390 0.610 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.403 0.597 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.039 -20.198 -5.262 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.062 3.938 3 N -0.279 5.279 4 C -0.101 4.101 5 C 0.285 3.715 6 O -0.418 6.418 7 N -0.363 5.363 8 C 0.130 3.870 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.731 3.269 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.339 3.661 18 O -0.408 6.408 19 O -0.301 6.301 20 C -0.155 4.155 21 C -0.214 4.214 22 C -0.210 4.210 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.184 0.816 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.222 0.778 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.261 0.739 34 H 0.144 0.856 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.132 -19.868 -5.892 20.959 hybrid contribution -1.235 0.301 1.561 2.013 sum -4.367 -19.568 -4.330 20.511 Atomic orbital electron populations 1.22475 0.93344 1.04389 1.03272 1.20320 0.93591 0.90184 0.89689 1.60204 1.62626 0.99375 1.05656 1.22000 0.98648 0.94272 0.95204 1.20138 0.81644 0.86293 0.83444 1.90671 1.38117 1.78035 1.35022 1.46437 1.52007 1.14390 1.23431 1.19107 0.95189 0.75233 0.97488 1.21263 1.33140 0.96720 1.07020 0.91868 1.24954 0.94825 0.97350 0.96912 1.69983 1.35387 1.12032 1.34837 0.86362 0.78580 0.79687 0.82283 1.19647 1.20782 1.20799 1.23180 0.78907 0.79783 0.84246 1.90718 1.57561 1.33307 1.59231 1.84762 1.34144 1.64809 1.46345 1.22082 1.04861 0.90780 0.97803 1.23129 0.97584 0.97654 1.03003 1.23064 0.93704 1.01529 1.02723 0.90368 0.91424 0.90500 0.81553 0.92109 0.88774 0.77812 0.95446 0.95528 0.92488 0.73901 0.85562 0.88003 0.88225 0.89171 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 7.54 37.16 0.28 -1.41 16 2 C 0.16 1.71 0.79 -132.76 -0.10 1.60 16 3 N -0.64 -8.54 5.48 -102.40 -0.56 -9.11 16 4 C 0.03 0.44 5.43 -4.98 -0.03 0.41 16 5 C 0.50 9.82 7.87 -10.99 -0.09 9.73 16 6 O -0.54 -12.77 16.20 5.56 0.09 -12.68 16 7 N -0.71 -14.85 5.55 -61.48 -0.34 -15.19 16 8 C 0.25 6.61 5.43 -5.20 -0.03 6.58 16 9 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 10 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.88 -26.01 13.29 55.43 0.74 -25.27 16 13 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.50 5.97 3.65 36.00 0.13 6.11 16 18 O -0.52 -7.05 16.85 -18.75 -0.32 -7.37 16 19 O -0.49 -5.50 12.15 -39.26 -0.48 -5.97 16 20 C -0.14 -1.30 5.44 -90.62 -0.49 -1.79 16 21 C -0.18 -1.43 9.56 -26.73 -0.26 -1.69 16 22 C -0.17 -1.59 9.68 -26.73 -0.26 -1.85 16 23 H 0.08 0.73 6.72 -51.93 -0.35 0.39 16 24 H 0.07 0.68 6.40 -51.94 -0.33 0.34 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.36 4.71 8.41 -39.29 -0.33 4.38 16 27 H 0.06 0.74 6.30 -51.93 -0.33 0.41 16 28 H 0.09 1.29 6.64 -51.92 -0.34 0.95 16 29 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.40 2.72 9.10 45.56 0.41 3.13 16 34 H 0.13 1.11 8.13 -51.93 -0.42 0.69 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.88 7.29 -51.93 -0.38 0.50 16 37 H 0.09 0.91 6.19 -51.93 -0.32 0.59 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -34.00 320.64 -6.69 -40.69 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.38 Total: 9.95 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.26 Total: 4.36 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.17 Total: -49.57 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.70 Total: -26.02 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.00 -6.69 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827728601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.053 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds