Wall clock time and date at job start Mon Mar 30 2020 01:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46804 * 2 1 4 4 C 1.46896 * 111.00137 * 59.99953 * 3 2 1 5 5 C 1.50701 * 109.47561 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99679 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00498 * 179.97438 * 5 4 3 8 8 C 1.46495 * 120.00206 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47210 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00011 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00281 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99964 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00191 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47173 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46954 * 120.00259 * 13 11 9 16 16 H 1.48500 * 109.46981 * 240.00061 * 13 11 9 17 17 C 1.50693 * 109.46962 * 120.00007 * 2 1 3 18 18 O 1.20820 * 120.00135 * 25.00523 * 17 2 1 19 19 O 1.34230 * 119.99839 * 205.00126 * 17 2 1 20 20 C 1.53001 * 109.47035 * 240.00106 * 2 1 3 21 21 C 1.53000 * 117.50223 * 304.99970 * 20 2 1 22 22 C 1.52997 * 117.49889 * 236.37231 * 20 2 1 23 23 H 1.09002 * 109.47008 * 179.97438 * 1 2 3 24 24 H 1.08988 * 109.47454 * 299.99813 * 1 2 3 25 25 H 1.09003 * 109.47278 * 60.00152 * 1 2 3 26 26 H 1.00903 * 111.00457 * 296.04901 * 3 2 1 27 27 H 1.09000 * 109.47288 * 299.99694 * 4 3 2 28 28 H 1.09012 * 109.47038 * 59.99885 * 4 3 2 29 29 H 0.97003 * 119.99573 * 0.02562 * 7 5 4 30 30 H 1.09000 * 109.46809 * 300.00128 * 8 7 5 31 31 H 1.09000 * 109.47463 * 60.00125 * 8 7 5 32 32 H 0.96997 * 120.00296 * 180.02562 * 12 11 9 33 33 H 0.96707 * 117.00126 * 180.02562 * 19 17 2 34 34 H 1.09002 * 115.55911 * 90.68659 * 20 2 1 35 35 H 1.08990 * 117.49990 * 145.01974 * 21 20 2 36 36 H 1.09004 * 117.49237 * 359.97438 * 21 20 2 37 37 H 1.08999 * 117.49685 * 0.02562 * 22 20 2 38 38 H 1.08997 * 117.50044 * 214.98097 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5486 2.1099 1.1876 5 6 2.0701 3.5234 1.1532 6 8 2.7653 3.8908 0.2299 7 7 1.7631 4.3794 2.1479 8 6 2.2696 5.7536 2.1141 9 6 1.7865 6.4972 3.3325 10 1 1.1640 5.9964 4.0592 11 6 2.1391 7.8169 3.5196 12 7 2.8968 8.4269 2.6345 13 14 1.5397 8.7388 5.0296 14 1 0.7084 7.8345 5.8641 15 1 2.7068 9.2069 5.8195 16 1 0.7278 9.9078 4.6059 17 6 2.0323 -0.7104 1.2304 18 8 1.3396 -1.5362 1.7763 19 8 3.2493 -0.4257 1.7199 20 6 2.0400 -0.7212 -1.2493 21 6 1.5416 -2.1468 -1.4950 22 6 2.9841 -1.9076 -1.0441 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.7501 1.8639 -0.8463 27 1 0.4587 2.1245 1.1959 28 1 1.9121 1.6106 2.0860 29 1 1.2067 4.0856 2.8862 30 1 3.3595 5.7390 2.1062 31 1 1.9065 6.2528 1.2157 32 1 3.1452 9.3553 2.7663 33 1 3.5281 -0.9074 2.5108 34 1 2.2079 -0.0894 -2.1215 35 1 1.3817 -2.4527 -2.5288 36 1 0.8507 -2.5709 -0.7664 37 1 3.2415 -2.1746 -0.0192 38 1 3.7730 -2.0564 -1.7814 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827728601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:13 Heat of formation + Delta-G solvation = -125.920401 kcal Electronic energy + Delta-G solvation = -20912.737274 eV Core-core repulsion = 17562.002792 eV Total energy + Delta-G solvation = -3350.734482 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.06783 -40.46344 -38.79569 -37.14690 -36.52005 -35.99517 -34.33932 -31.45733 -29.55215 -27.62489 -26.01761 -24.59794 -23.45946 -23.13013 -21.36614 -20.69050 -19.32037 -18.91283 -18.10564 -17.61129 -17.14364 -16.84830 -16.69795 -16.17653 -15.83017 -15.42396 -15.11668 -14.88941 -14.48429 -14.27716 -14.07238 -13.85167 -13.60029 -13.19366 -12.90889 -12.86555 -12.72268 -12.62092 -12.56840 -12.27990 -12.22057 -11.57526 -11.45411 -11.37568 -11.15563 -10.81142 -10.77292 -9.83627 -9.55659 -8.28752 -6.45068 1.06364 1.43759 1.44604 1.58019 1.75444 2.01440 2.19956 2.41262 2.74442 3.06288 3.12164 3.49674 3.71910 3.88112 4.00744 4.13121 4.16004 4.24689 4.26398 4.31902 4.61901 4.68939 4.74556 4.95317 5.07082 5.10660 5.12706 5.20096 5.25896 5.48750 5.49520 5.63592 5.74810 5.85726 6.14376 6.66099 6.91354 6.97342 7.24111 7.48938 8.83589 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038429 B = 0.003501 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.447998 B = 7995.904376 C = 8213.968212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.156 3.844 3 N -0.657 5.657 4 C 0.048 3.952 5 C 0.500 3.500 6 O -0.584 6.584 7 N -0.709 5.709 8 C 0.267 3.733 9 C -0.555 4.555 10 H 0.083 0.917 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.984 3.016 14 H -0.254 1.254 15 H -0.280 1.280 16 H -0.279 1.279 17 C 0.498 3.502 18 O -0.538 6.538 19 O -0.501 6.501 20 C -0.146 4.146 21 C -0.160 4.160 22 C -0.183 4.183 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.363 0.637 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.407 0.593 30 H -0.013 1.013 31 H -0.010 1.010 32 H 0.269 0.731 33 H 0.420 0.580 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.520 -21.375 -4.365 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.063 3.937 3 N -0.292 5.292 4 C -0.083 4.083 5 C 0.286 3.714 6 O -0.465 6.465 7 N -0.359 5.359 8 C 0.144 3.856 9 C -0.593 4.593 10 H 0.101 0.899 11 C -0.196 4.196 12 N -0.569 5.569 13 Si 0.807 3.193 14 H -0.177 1.177 15 H -0.205 1.205 16 H -0.204 1.204 17 C 0.341 3.659 18 O -0.428 6.428 19 O -0.312 6.312 20 C -0.165 4.165 21 C -0.197 4.197 22 C -0.220 4.220 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.110 0.890 26 H 0.186 0.814 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.243 0.757 30 H 0.005 0.995 31 H 0.008 0.992 32 H 0.077 0.923 33 H 0.281 0.719 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.630 -21.102 -4.970 22.168 hybrid contribution -0.706 0.602 1.231 1.541 sum -5.336 -20.500 -3.739 21.510 Atomic orbital electron populations 1.22481 0.92083 1.04821 1.03894 1.20430 0.94540 0.88636 0.90057 1.60148 1.63475 1.00395 1.05207 1.21842 1.00060 0.90193 0.96247 1.21073 0.80349 0.88033 0.81927 1.90650 1.39953 1.79282 1.36581 1.46171 1.52375 1.12647 1.24750 1.18541 0.92730 0.78070 0.96241 1.21650 1.33212 0.97192 1.07265 0.89879 1.26049 0.94698 0.98490 1.00347 1.70139 1.36862 1.12595 1.37285 0.85122 0.78108 0.78164 0.77887 1.17705 1.20532 1.20423 1.23367 0.78822 0.79484 0.84269 1.90709 1.58065 1.34180 1.59829 1.84731 1.33893 1.65191 1.47412 1.22128 1.05633 0.91334 0.97369 1.23168 0.96464 0.96086 1.03962 1.23125 0.94745 1.01644 1.02474 0.90043 0.91701 0.88960 0.81431 0.89117 0.87744 0.75745 0.99508 0.99160 0.92252 0.71925 0.84874 0.85932 0.88815 0.90372 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 7.54 71.98 0.54 -2.40 16 2 C 0.16 3.16 0.79 2.78 0.00 3.16 16 3 N -0.66 -16.58 5.48 -477.87 -2.62 -19.20 16 4 C 0.05 1.30 5.43 85.56 0.46 1.76 16 5 C 0.50 19.55 7.87 87.66 0.69 20.24 16 6 O -0.58 -28.30 16.20 -3.03 -0.05 -28.35 16 7 N -0.71 -29.54 5.55 -466.80 -2.59 -32.13 16 8 C 0.27 14.57 5.43 85.63 0.46 15.04 16 9 C -0.56 -30.04 9.28 25.60 0.24 -29.80 16 10 H 0.08 4.07 7.60 -2.91 -0.02 4.04 16 11 C 0.00 0.21 5.46 84.65 0.46 0.67 16 12 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 13 Si 0.98 42.14 29.54 68.60 2.03 44.16 16 14 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 17 C 0.50 11.23 3.65 71.23 0.26 11.49 16 18 O -0.54 -13.81 16.85 21.98 0.37 -13.44 16 19 O -0.50 -10.60 12.15 -51.42 -0.62 -11.22 16 20 C -0.15 -2.51 5.44 -10.79 -0.06 -2.57 16 21 C -0.16 -2.25 9.56 30.60 0.29 -1.95 16 22 C -0.18 -3.08 9.68 30.60 0.30 -2.78 16 23 H 0.08 1.35 6.72 -2.39 -0.02 1.33 16 24 H 0.06 1.13 6.40 -2.39 -0.02 1.11 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.36 9.07 8.41 -89.69 -0.75 8.31 16 27 H 0.09 1.94 6.30 -2.39 -0.02 1.93 16 28 H 0.10 2.64 6.64 -2.38 -0.02 2.63 16 29 H 0.41 13.99 8.32 -92.71 -0.77 13.22 16 30 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 33 H 0.42 5.17 9.10 -74.05 -0.67 4.50 16 34 H 0.13 2.10 8.13 -2.39 -0.02 2.08 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.46 7.29 -2.38 -0.02 1.45 16 37 H 0.08 1.51 6.19 -2.39 -0.01 1.49 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.77 320.64 -0.63 -75.40 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -1.08 Total: 27.54 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 3.65 Total: 12.85 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -4.93 Total: -106.95 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -0.30 Total: -53.01 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -74.77 -0.63 -75.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827728601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.521 kcal (2) G-P(sol) polarization free energy of solvation -74.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds